BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64180.1
Length=2072
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474936 jgi|Araly1|474936|fgenesh2_kg.2__66__AT1G64180.1 2119 0.0
Ahg493825 jgi|Araly1|493825|fgenesh2_kg.7__3258__AT5G41620.1 398 1e-109
> Ahg474936 jgi|Araly1|474936|fgenesh2_kg.2__66__AT1G64180.1
Length=1988
Score = 2119 bits (1147), Expect = 0.0
Identities = 1390/1503 (92%), Gaps = 33/1503 (2%)
Strand=Plus/Plus
Query 1 AAATGAAACGAGAGAGACAACAG--TTCCATCTCCATGATTATGAACAGAGAAAAAAGGT 58
|||||||| |||||||||| ||| ||| | ||||||||||||||||||||||||| |||
Sbjct 1 AAATGAAATGAGAGAGACACCAGCTTTCGA-CTCCATGATTATGAACAGAGAAAAAGGGT 59
Query 59 TTCTTC-TTAATAA-AAGCAACAAAGAAAAAGTCG-AACTTTTGGTTTAG-TTAGCCGCT 114
|||||| ||| ||| || ||| || ||| ||| | ||||||| |||||| |||||| ||
Sbjct 60 TTCTTCTTTATTAATAA--AACCAA-AAAGAGT-GAAACTTTTTGTTTAGTTTAGCCTCT 115
Query 115 CTCTaaagaaatgaaaagtaaagaagaagaagaagaagaagaagaggaagatgatggagg 174
|||||||||||||||||||||||||||||| ||||| || | |||| ||| | | ||
Sbjct 116 CTCTAAAGAAATGAAAAGTAAAGAAGAAGAGGAAGATGATG--GAGG-AGA--A-GAAGA 169
Query 175 agaagggcaaaaagggaagagatttatagaaaagTTAAGGAGAAGAGCTGTTTTTGTAGG 234
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 170 AGAAGGGCAAAAAGGGAAGAGATTTATAGAAAAGTTAAGGAGAAGAGCTGTTCTTGTAGG 229
Query 235 CCATAGAAGTGTCTTTCGCCGACCTTCCACTCCTGTGCATATTAGCTTCAACCCTAATAA 294
|||||||||| ||||||||||||||||||||||| ||| ||| | ||||||||||||||
Sbjct 230 CCATAGAAGTTTCTTTCGCCGACCTTCCACTCCTACGCACATTGGTTTCAACCCTAATAA 289
Query 295 GAA-CC--CTTCTTCTGCCTCCTCTAGAAAGCTTGCTGCTTCTCTCTGGGAATTTTATCA 351
|| || |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TAACCCTTCTTCTTCTTCCTCCTCTAGAAAGCTTGCTGCTTCTCTCTGGGAATTTTATCA 349
Query 352 GTATTACGACAACGACCACCTGATTCATCCTCCTGCTGCTACTAAAATGCACAGAGCTCC 411
|||||||||||||||| | | ||||||||||||| ||||||||||||||||| |||||||
Sbjct 350 GTATTACGACAACGACTATCAGATTCATCCTCCTTCTGCTACTAAAATGCACCGAGCTCC 409
Query 412 CTTAGGTTCTGCTGGTCCTAGTAACAGCCGTCGTCTCCGTCACGGCCATGGAAAGGCGGC 471
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 410 CTTAGGTTCTGCTGGTCCCAGTAACAACCGTCGTCTCCGTCACGGCCATGGAAA------ 463
Query 472 GGTTGCAGACAATAATGGTATTGAGCTCACTGATCACCAGCCAGAGAGTGCGGGAAGTAT 531
| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 464 -G--GCAGACAATAATGGTCTTGAGTTCACTGATCACCAGCCAGAGAGTGCGGGAAGTAT 520
Query 532 AAGGAGACAGATCGGGCAAATGCTGATGAAGCATCATCATTTAACTGAAAGAAATGACCA 591
|||||||||||| || ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 521 AAGGAGACAGATTGGTCAAATGCTGATGAAGCATCATCATTTAACCGAAAGAAACGACCA 580
Query 592 TGCTTTGCAGCCGGTATCTCCTACAAGCTACGATAGCTCATTGGAGT-TCCGTGGAAGAA 650
||||||||||||||||||||||||||||||||||||||| | |||| |||| ||||||
Sbjct 581 TGCTTTGCAGCCGGTATCTCCTACAAGCTACGATAGCTCCCTCGAGTCTCCG-GGAAGAC 639
Query 651 GACGAGCTGGTGAGCCTAACAACAATATCAAGACATCAACCGAACTTCTTAAAGTGCTGA 710
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||
Sbjct 640 GACGAGCTGGTGAGCCTAACTACAATCTCAAGACATCAACCGAACTTCTTAAAGTACTGA 699
Query 711 ACCGAATCTGGATCCTCGAGGAGCAGCATTCCGCTAATATCTCCTTAATAAAATCTTTGA 770
|||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||| |
Sbjct 700 ACCGAATCTGGAGCCTCGAAGAGCAGCATTCCTCTAATATCTCCTTAATAAAATCTTTAA 759
Query 771 AAACCGAGCTTGCTCACTCACGTGCCCGGATCAAAGACCTTCTTAGATGCAAGCAAGCCG 830
|||||||||||||||| |||||||||||||||||||| ||||| |||||| |||| ||||
Sbjct 760 AAACCGAGCTTGCTCATTCACGTGCCCGGATCAAAGAGCTTCTCAGATGCCAGCAGGCCG 819
Query 831 ATAAACGCGATATGGATGATTTTGTGAAGCAACTCGCGGAAGAAAAGCTGTCGAAAGGTA 890
||| |||||||||||||||||| |||||||||||||||| |||||||||||| |||| ||
Sbjct 820 ATAGACGCGATATGGATGATTTAGTGAAGCAACTCGCGGGAGAAAAGCTGTCAAAAGATA 879
Query 891 CGAAGGAACACGATCGGTTAAGCTCTGCTGTTCAATCGCTAGAAGATGAGCGGAAACTAA 950
|||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||| |
Sbjct 880 CGAAGGAACATGATCGGTTAAGCTATGCGGTTCAATCGCTAGAAGATGAGCGGAAACTGA 939
Query 951 GGAAACGTTCTGAGAGTCTGTATAGGAAATTGGCACAAGAGCTCTCGGAAGTGAAGTCAA 1010
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 GGAAACGTTCTGAGAGTTTGTATAGGAAATTGGCACAAGAGCTCTCGGAAGTGAAGTCAA 999
Query 1011 CGTTGTCTAACTGCGTTAAGGAGATGGAGAGAGGGACTGAGTCAAAGAAAATTCTGGAGA 1070
| |||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1000 CTTTGTGTAACTGCGTTAAGGAGATGGAGAGAGGGACTAAGTCAAAGAAGATTCTGGAGA 1059
Query 1071 GATTATGTGATGAGTTTGCAAAAGGGATCAAGAGTTACGAAAGGGAGATTCATGGTTTAA 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 GATTATGTGATGAGTTTGCAAAAGGGATCAAGAGTTACGAAAGGGAGATTCATGGTTTAA 1119
Query 1131 AGCAGAAGTTGGATAAGAACTGGAAAGGTTGGGATGAACAAGATCATATGATTCTTTGTA 1190
||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||
Sbjct 1120 AGCAGAAGTTGGATAAGAACTGGAAAGGTTGGGGTGAACAAGATCAGATGGTTCTTTGTA 1179
Query 1191 TTGCGGAATCATGGCTTGATGAAAGGATTCAGAGTGGCAACGGATCGGCTTTGGAGAAGC 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 TTGCGGAATCATGGCTTGATGAAAGGATTCAGAGTGGCAACGGATCGGCTTTGGAGAAGC 1239
Query 1251 TCGAGTTTGAGATAGAAACATTTCTTAAGACTAATCAGAACGCAGACTCTAATGAAATAG 1310
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1240 TCGAGTTTGAGATAGAAACATTTCTTAAGACTAAGCAGAACGCAGACTCTAAAGAAATAG 1299
Query 1311 CGAGAAATCGCCGTACTTCACTTGAGTCGGTTCCATTTAACGCCATGAGCGCCCCGATTT 1370
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 CGAGAAATCGCCGGACTTCACTTGAGTCGGTTCCATTTAACGCCATGAGCGCCCCGATTT 1359
Query 1371 GGGAAGTAGACCGTGAGGAGGAGGAAGATTCTGGCGGAAGCGGTTCGAATTGTTTTGAGC 1430
||||||| |||| ||||||||| |||||||||||||||||| ||| |||||||||||||
Sbjct 1360 GGGAAGTCGACCATGAGGAGGAAGAAGATTCTGGCGGAAGCAATTCAAATTGTTTTGAGC 1419
Query 1431 TCAAGAAACATGGGAGTGATGTTGCAAAGCCACCACGT-GGCGATGAAACTGAAAAACCG 1489
||||||||||||||||||||||||||||||||| || | |||||||||||||| ||||||
Sbjct 1420 TCAAGAAACATGGGAGTGATGTTGCAAAGCCACGAC-TCGGCGATGAAACTGAGAAACCG 1478
Query 1490 GAA 1492
|||
Sbjct 1479 GAA 1481
Score = 627 bits (339), Expect = 1e-178
Identities = 449/500 (90%), Gaps = 16/500 (3%)
Strand=Plus/Plus
Query 1524 AAAGACGGAGTCAAAGCCCGTCGAGTTTACAAGTGAAGTTCGAGGATCAAATGGCGTGGG 1583
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 AAAGACGGAATCAAAGCCCGTCGAGTTTACAAGTGAAGTTCGAGGATCAAATGGCGTGGG 1539
Query 1584 CGATGTCTTCTAATGAGAAAAAGAAAACTAGAGCCAATGAAATGGAGCCTGAAACTGAGA 1643
|||||||||||||||||||||||||| ||||||||| || || | | | | | | |
Sbjct 1540 CGATGTCTTCTAATGAGAAAAAGAAAGCTAGAGCCATTG-AA---A--C-G-GA-T-A-A 1588
Query 1644 AGTGTGGTAAAGAAACGAACAATGTGGTTGGAGAAATGATCAGAACTCATCGGAGGTTAT 1703
| |||||||||| ||| |||||||| |||||||||||||| ||||||||| |||||||||
Sbjct 1589 A-TGTGGTAAAGGAACAAACAATGTAGTTGGAGAAATGATTAGAACTCATAGGAGGTTAT 1647
Query 1704 CGTCGGAAACTCGGGAGATCGATGAAGCTTCTTGCAGTTACCCATCAAGGAGACGAGAGA 1763
||||||||||||||| ||| |||||||||||||||||||||||||||| ||| ||||||
Sbjct 1648 TGTCGGAAACTCGGGATATCAATGAAGCTTCTTGCAGTTACCCATCAAGAAGAAGAGAGA 1707
Query 1764 GCCCGATTCGTCAATGGAATAC-ACGAACCGTAACACCTGATCTTGGTGCGCCACGAGGA 1822
|||||||||||||||||||||| | ||||||||||||||||||| ||||||||| ||||
Sbjct 1708 GCCCGATTCGTCAATGGAATACGA-GAACCGTAACACCTGATCTCAGTGCGCCACAAGGA 1766
Query 1823 GTAAAGGATAACACTTTGAAGACTAAACTAAGCGAAGCGAGAACAACGAGTTCAAGGCCA 1882
|||||||| |||||||||||| |||||||||||||||||||||||| |||||| ||||||
Sbjct 1767 GTAAAGGACAACACTTTGAAGGCTAAACTAAGCGAAGCGAGAACAAAGAGTTCGAGGCCA 1826
Query 1883 CGGGTTAGGCTATTCAAGGATTGAGTTTCTGATGTAATCTGTAT-CGTAAGAGCCATTTT 1941
|| ||| || ||||||||| ||||||||||||||||||||||| || |||||||||| |
Sbjct 1827 CGAGTTCGGGTATTCAAGGGGTGAGTTTCTGATGTAATCTGTATACGGAAGAGCCATTCT 1886
Query 1942 TGGCGGAAATGGTCGGACTCGAAGATGGAACAAGCTGAGATTGTTCCATTTGTGTATATG 2001
||| | || ||||| |||||| ||||||||||||||||||||||||||| |||| |||||
Sbjct 1887 TGGTGCAA-TGGTCAGACTCGGAGATGGAACAAGCTGAGATTGTTCCATGTGTGGATATG 1945
Query 2002 TTCATCTGTAGAGCTTATAT 2021
|||||||||||||||| |||
Sbjct 1946 TTCATCTGTAGAGCTTGTAT 1965
> Ahg493825 jgi|Araly1|493825|fgenesh2_kg.7__3258__AT5G41620.1
Length=2000
Score = 398 bits (215), Expect = 1e-109
Identities = 492/622 (79%), Gaps = 34/622 (5%)
Strand=Plus/Plus
Query 625 TAGCTCATTGGAGTTCCGTGGAAGAAGACGAGCTGGTGAGCCTAACAACAATATCAAGAC 684
||| |||||||| ||||| ||||| || || || | || ||| | ||||| |||||||
Sbjct 513 TAGTTCATTGGATTTCCGAGGAAG-AG-CG-TCTAGAGAACCTCATTACAATCTCAAGAC 569
Query 685 ATCAACCGAACTTCTTAAAGTGCTGAACCGAATCTGGATCCTCGAGGAGCAGCAT-TC-C 742
||||||||||||||||||||| ||||||| || |||| ||| |||||||||||| || |
Sbjct 570 ATCAACCGAACTTCTTAAAGTATTGAACCGTATTTGGAGCCTTGAGGAGCAGCATGTCTC 629
Query 743 GCTAATATCTCCTTAATAAAATCTTTGAAAACCGAGCTTGCTCACTCACGTGCCCGGATC 802
| |||||||| || ||||| |||||||||||||| | ||||| || |||| || |||
Sbjct 630 -C-AATATCTCTTTGATAAAGGCTTTGAAAACCGAGGTGGCTCATTCTCGTGTTCGAATC 687
Query 803 AAAGACCTTCTTAGATGCAAGCAAGCCGATAAACGCGA-TATGGATGATTTTGTGAAGCA 861
|| || |||||||| | | ||||||| |||| || ||| | | || | | | ||||||||
Sbjct 688 AAGGAGCTTCTTAGGTACCAGCAAGCTGATAGACACGAGT-TAGACGGTGTGGTGAAGCA 746
Query 862 ACTCGCGGAAGAAAAGCTGTCGA--AAGGTACGAAGGAACACGATCGGTTAAGCTCTGCT 919
|||||| ||||||||| ||| || ||| | |||||| || ||| | |||||||||
Sbjct 747 ACTCGCTGAAGAAAAGTTGTTGAGGAAGA-AT-AAGGAAGTTGAGCGGATGAGCTCTGCT 804
Query 920 GTTCAATC-GC----------T-AGAAGATGAGCGGAAACTAAGGAAACGTTCTGAGAGT 967
||||| || | | ||||||||||||||| || ||||||||||||||||||
Sbjct 805 GTTCATTCTGTGAGGAAAGAGTTAGAAGATGAGCGGAAGCTTAGGAAACGTTCTGAGAGT 864
Query 968 CTGTATAGGAAATTGGCACAAGAGCTCTCGGAAGTGAAGTCAACGTTGTCTAACTGCGTT 1027
|| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct 865 TTGCATAGGAAATTGGCACGAGAGCTCTCGGAAGTGAAGTCTTCGTTGTCTAACTGTGTT 924
Query 1028 AAGGAGATGGAGAGAGGGACTGAGTCAAAGAAAATTCTGGAGAGATTATGTGATGAGTTT 1087
|||||| | ||||||||| || | ||||| || || ||||| | | || |||||||||
Sbjct 925 AAGGAGCTTGAGAGAGGGGCTAAATCAAATAAGATGATGGAGCTACTCTGCGATGAGTTT 984
Query 1088 GCAAAAGGGATCAAGAGTTACGAA-AGGGAGATTCATGGTTTAAAGCAGAAG--T-TGGA 1143
|| ||||||||||||||||||||| ||| ||||||| ||||||||| ||||| | | ||
Sbjct 985 GCCAAAGGGATCAAGAGTTACGAAGAGG-AGATTCACGGTTTAAAGAAGAAGAATCTTGA 1043
Query 1144 TAAGAACTGGAAAGGTTG-GGATGAACAAGATCATAT-GATTCTTTGTATTGCGGAATCA 1201
|||| | ||| ||| | || || | |||||| || | ||||| ||| ||||||||
Sbjct 1044 TAAGGATTGGGCGGGTCGAGG-TGGAGGAGATCA-ATTGGTTCTTCATATCGCGGAATCT 1101
Query 1202 TGGCTTGATGAAAGGATTCAGA 1223
|||||||| |||||||| ||||
Sbjct 1102 TGGCTTGACGAAAGGATGCAGA 1123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77932641270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5