BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64185.1
Length=601
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315015 jgi|Araly1|315015|fgenesh1_pm.C_scaffold_2000048 518 2e-146
Ahg493824 jgi|Araly1|493824|fgenesh2_kg.7__3257__AT5G41650.1 305 2e-82
> Ahg315015 jgi|Araly1|315015|fgenesh1_pm.C_scaffold_2000048
Length=357
Score = 518 bits (280), Expect = 2e-146
Identities = 331/356 (93%), Gaps = 2/356 (1%)
Strand=Plus/Plus
Query 14 ATGGCAACGGCGTCGTTTAGGTGGATCTTGCAGCTCCACAGAGACGTACCAAAAGCGGCT 73
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGCGACGGCGTCGTTTAGGTGGATCTTGCAGCTACACAGAGACGTACCAAAAGCGGCT 60
Query 74 CGATTCTATGAGAAAGGTCTCGATTTCTCCGTCAATGTCGTTACCTTACGTTGGGCTGAA 133
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 61 CGATTCTACGAGAAAGGTCTCGATTTCTCCGTCAATGTGGTCACCTTACGTTGGGCTGAA 120
Query 134 CTTCAGTCAGGTCCCCTCAAGCTAGCTCTTATGCAAGCTCCCAGCGAGCATGTGATGAGT 193
||||| || ||||| ||||||||||||||||||||| |||| ||||||||| || ||||
Sbjct 121 CTTCACTCTGGTCCTCTCAAGCTAGCTCTTATGCAATCTCCTAGCGAGCATATGCCGAGT 180
Query 194 GAGAAAGGATACTCTTCGTTACTATCGTTCACTGTAG-CAGACATTAATACAACAATCTC 252
||||| ||||||||||| |||||||||||||||| | | ||||| ||||||||||||||
Sbjct 181 GAGAAGGGATACTCTTCACTACTATCGTTCACTGT-GACGGACATCAATACAACAATCTC 239
Query 253 TAAACTTATGGAATTAGGAGCTGAACTCGATGGCTCTATCAAATATGAAGTCCATGGCAA 312
||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||
Sbjct 240 TAAACTTATGGAATTAGGAGCAGAACTTGATGGCTCTATCAAATACGAGGTCCATGGCAA 299
Query 313 GGTTGCTTCTGTGAGATGTCTTGATGGTCATGTGCTCGGACTCTATGAACCTTCAT 368
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGTTGCATCTGTGAGATGTCTTGATGGTCATGTGCTCGGACTCTATGAACCTTCAT 355
> Ahg493824 jgi|Araly1|493824|fgenesh2_kg.7__3257__AT5G41650.1
Length=632
Score = 305 bits (165), Expect = 2e-82
Identities = 287/344 (83%), Gaps = 15/344 (4%)
Strand=Plus/Plus
Query 6 AGAGCGAGATGGCAACGGCGTCGTTTAGGTGGAT-CTTGCAGCTCCACAGAGACGTACCA 64
|||| ||||||||||||||||||||||||||||| || |||||| |||||||||||||||
Sbjct 27 AGAGAGAGATGGCAACGGCGTCGTTTAGGTGGATTCT-GCAGCTTCACAGAGACGTACCA 85
Query 65 AAAGCGGCTCGATTCTATGAGAAAGGTCTCGATTTCTCCGTCAATGTCGTTACCTTACGT 124
||||| ||||||||||||| | |||||||||| ||||||||||||||||| || |||||
Sbjct 86 AAAGCTGCTCGATTCTATGCGCAAGGTCTCGACTTCTCCGTCAATGTCGTCACTTTACGC 145
Query 125 TGGGCTGAACTTCAGTCAGGTCCCCTCAAGCTAGCTCTTATGCAAGCTCCCAGCGAGCAT 184
|||||||| || || || ||||| ||||||||||||||||||||| |||| ||||| |||
Sbjct 146 TGGGCTGAGCTCCATTCTGGTCCTCTCAAGCTAGCTCTTATGCAATCTCCTAGCGATCAT 205
Query 185 GTGATGAGTGAGAAAGGATACTCTTCG-TTACTATCGTTCACTGTAG---C---AGACAT 237
|| || |||||| |||||||| ||| || ||||||||||| || | ||||||
Sbjct 206 GT--TGC-TGAGAAGGGATACTCATCGCTT-CTATCGTTCACACAAGAGGCTGCAGACAT 261
Query 238 TAATACAACAATCTCTAAACTTATGGAATTAGGAGCTGAACTCGATGGCTCTATCAAATA 297
|||||||||| | | |||||||||| || ||||| ||| | |||||| ||||||| ||
Sbjct 262 TAATACAACAGTGACCAAACTTATGGCTTTGGGAGCAGAATTAGATGGCACTATCAAGTA 321
Query 298 TGA-AGTCCATGGCAAGGTTGCTTCTGTGAGATGTCTTGATGGT 340
||| | | ||||| |||||||| || ||||||| | |||||||
Sbjct 322 TGAGA-TACATGGAAAGGTTGCGGCTATGAGATGCCCTGATGGT 364
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22015774853
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5