BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64190.1
Length=1809
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924525 jgi|Araly1|924525|scaffold_200086.1 2399 0.0
Ahg493822 jgi|Araly1|493822|fgenesh2_kg.7__3255__AT5G41670.1 1705 0.0
> Ahg924525 jgi|Araly1|924525|scaffold_200086.1
Length=1504
Score = 2399 bits (1299), Expect = 0.0
Identities = 1422/1482 (96%), Gaps = 6/1482 (0%)
Strand=Plus/Plus
Query 111 TCTCTCTATCTCCAATGGAGTCCGCCGCACTATCCCGAATCGGTCTCGCCGGACTCGCCG 170
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 7 TCTCTCTATCTCCAATGGAGTCCGCCGCACTATCCCGAATTGGTCTTGCCGGACTCGCCG 66
Query 171 TGATGGGCCAAAACCTCGCCTTAAACATCGCCGAGAAAGGTTTCCCAATCTCAGTCTACA 230
| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 TAATGGGCCAGAACCTGGCCTTAAACATCGCCGAGAAAGGTTTCCCAATCTCAGTCTACA 126
Query 231 ATCGAACCACTTCCAAAGTCGACGAAACCCTAGATCGAGCCGCCGTCGAAGGAAACCTCC 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 ATCGAACCACTTCCAAAGTCGACGAAACCCTAGATCGAGCCGCCGTCGAAGGAAACCTCC 186
Query 291 CAGTCTCCGGCCAATACTCTCCC-CGCGATTTCGTCCTCTCGATCCAACGGCCTAGATCT 349
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 187 CAGTCTCCGGCCAATACTC-CCCTCGCGATTTCGTCCTCTCGATCCAACGGCCTAGATCT 245
Query 350 CTCATCATCCTCGTCAAAGCTGGAGCTCCCGTTGACCAAACAATCGACGCCTTCTCCGAA 409
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 246 CTCATCATCCTCGTCAAAGCTGGAGCTCCCGTTGACCAAACAATCGACGCGTTCTCCGAG 305
Query 410 TACATGGAGCCAGGAGATTGCATCATCGACGGTGGAAACGAATGGTATCAGAACACAGAG 469
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 TACATGGAGCCCGGAGATTGCATCATCGACGGTGGAAACGAATGGTATCAGAACACAGAG 365
Query 470 CGACGGATCTCCGAAGCTGAGCAAAAAGGATTGCTCTATTTAGGTATGGGAGTCTCCGGC 529
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 CGACGGATCTCCGAAGCAGAGCAAAAAGGATTGCTCTATTTAGGTATGGGAGTCTCCGGC 425
Query 530 GGCGAAGAAGGAGCTCGTAACGGTCCTTCGTTAATGCCTGGTGGATCATTTCAAGCTTAT 589
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 GGCGAAGAAGGTGCTCGTAACGGTCCTTCGTTAATGCCTGGTGGATCATTTCAAGCTTAT 485
Query 590 GATAACATCAAAGATATTTTGGAGAAAGTCGCAGCTCAAGTTGAAGATGGACCTTGTGTT 649
|||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 486 GATAACATTAAAGATATCTTGGGGAAAGTCGCAGCTCAAGTTGAAGATGGACCTTGTGTT 545
Query 650 ACTTACATCGGAGAAGGTGGATCTGGAAATTTCGTGAAGATGGTTCATAATGGGATTGAG 709
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 ACATACATCGGAGAAGGTGGATCTGGAAATTTCGTGAAGATGGTTCATAATGGGATTGAG 605
Query 710 TATGGAGATATGCAATTGATCTCTGAAGCTTATGATGTGTTGAAGAACGTTGGTGGATTA 769
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 606 TATGGAGATATGCAATTGATCTCTGAAGCGTATGATGTGTTGAAGAACGTTGGTGGTTTG 665
Query 770 AGCAACGAGGAGCTTGCTGAGATTTTCACTGAGTGGAATTC-AGGTGAGCTTGAGAGTTT 828
||||| || |||||||| ||||||||||| ||||||||| | ||||||||||||||||||
Sbjct 666 AGCAATGAAGAGCTTGCGGAGATTTTCACGGAGTGGAAT-CGAGGTGAGCTTGAGAGTTT 724
Query 829 CTTGGTTGAGATAACTTCTGATATATTTAGGGTTAAGGATGAGTTTGGTGATGGAGAGTT 888
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 725 CTTGGTTGAGATTACTTCGGATATATTTAGGGTTAAGGATGAGTTTGGTGATGGAGAGTT 784
Query 889 AGTTGATAAGATTTTGGATAAGACTGGTATGAAAGGTACTGGGAAATGGACGGTGCAGCA 948
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 785 AGTTGATAAGATTTTGGATAAGACTGGTATGAAAGGTACCGGGAAATGGACGGTGCAGCA 844
Query 949 AGCGGCGGAGCTGTCTGTTGCAGCTCCGACGATTGCTGCTTCGTTGGATTGTAGGTATTT 1008
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 845 AGCGGCGGAGCTGTCTGTGGCGGCTCCGACGATTGCTGCTTCGTTGGATTGTAGGTATTT 904
Query 1009 GAGTGGGTTGAAAGATGAGAGGGAGAATGCAGCGAAAGTGTTGAGGGAAGCTGGATTGAA 1068
|||||| ||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 905 GAGTGGATTGAAAGATGAGAGGGAGAATGCTGCCAAAGTGTTGAGGGAAGCTGGTTTGAA 964
Query 1069 AGAAGAGATTGGTTCTGCGTCGAGTGGAATCGATAAGAAGAGATTGGTTGATGATGTTAG 1128
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 965 AGAAGAGATTGGTTCTGCGTCTAGCGGAATCGATAAGAAGAGATTGGTTGATGATGTTAG 1024
Query 1129 GCAAGCTTTGTATGCTTCCAAGATTTGTAGTTATGCTCAAGGGATGAATTTGCTTAGAGC 1188
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 GCAAGCTTTGTATGCTTCGAAGATTTGTAGTTATGCTCAAGGGATGAATTTGCTTAGAGC 1084
Query 1189 TAAGAGTTTAGAGAAGAG-TTGGAACTTGAATTTTGGTGAATTGGCTAGGATTTGGAAAG 1247
||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1085 TAAGAGTTTAGAGAA-AGGTTGGAACTTGAATTTCGGTGAATTGGCTAGGATTTGGAAAG 1143
Query 1248 GTGGTTGTATTATAAGAGCGGTTTTCTTGGATAGGATCAAGAAAGCTTACCAGAGGAACC 1307
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 GTGGGTGTATTATAAGAGCGGTTTTCTTGGATAGGATCAAGAAAGCTTACCAGAGGAACC 1203
Query 1308 CGGACTTGGCTAGTCTTGTGGTTGATCCTGAGTTTGCTAAAGAGATGGTTCAGAGACAAG 1367
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 CGGATTTGGCGAGTCTTGTGGTTGATCCTGAGTTTGCTAAAGAGATGGTTCAGAGACAAG 1263
Query 1368 CTGCTTGGAGAAGAGTTGTTGGTTTGGCTGTTTCTGCTGGGATTAGCACGCCTGGAATGT 1427
|||||||||||||||| || || |||||||||||||| |||||||||||||| |||||||
Sbjct 1264 CTGCTTGGAGAAGAGTGGTGGGCTTGGCTGTTTCTGCAGGGATTAGCACGCCAGGAATGT 1323
Query 1428 GTGCTAGTCTTGCGTATTTCGATACTTATAGACGTGCTAGATTGCCGGCGAATCTGGTTC 1487
| || ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1324 GCGCGAGTCTTGCGTATTTCGATACTTATAGACGCGCTAGATTGCCGGCAAATCTGGTTC 1383
Query 1488 AGGCGCAGAGAGATCTCTTTGGAGCTCACACTTATGAGAGAACCGATCGTCCTGGTGCGT 1547
|||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 1384 AGGCGCAGAGAGATCTCTTTGGAGCTCATACTTACGAGAGGACCGATCGTCCTGGTGCGT 1443
Query 1548 ACCATACTGAATGGACTAAGCTTGCCAGGAAGAACCATTGAA 1589
|||| || |||||||| |||||||| ||||||||| ||||||
Sbjct 1444 ACCACACCGAATGGACCAAGCTTGCTAGGAAGAACAATTGAA 1485
> Ahg493822 jgi|Araly1|493822|fgenesh2_kg.7__3255__AT5G41670.1
Length=1735
Score = 1705 bits (923), Expect = 0.0
Identities = 1310/1494 (88%), Gaps = 37/1494 (2%)
Strand=Plus/Plus
Query 107 CTCATCTCTCTATCTC-C---AATGGAGTCCGCCGCACTATCCCGAATCGGTCTCGCCGG 162
||| |||||||||||| | ||||||||||||||| ||||| || ||||||||||||||
Sbjct 44 CTC-TCTCTCTATCTCTCAAAAATGGAGTCCGCCGCTCTATCTCGCATCGGTCTCGCCGG 102
Query 163 ACTCGCCGTGATGGGCCAAAACCTCGCCTTAAACATCGCCGAGAAAGGTTTCCCAATCTC 222
|| || || ||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 103 TCTTGCAGTCATGGGACAAAACCTCGCTTTAAACATCGCCGAGAAAGGATTCCCAATCTC 162
Query 223 AGTCTACAATCGAACCACTTCCAAAGTCGACGAAACCCTAGATCGAGCCGCCGTCGAAGG 282
|||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||
Sbjct 163 CGTCTACAATCGAACCACTTCCAAAGTCGACGAAACCCTAGATCGTGCCTCCGACGAAGG 222
Query 283 AAACCTCCCAGTCTCCGGCCAATACTCTCCCCGCGATTTCGTCCTCTCGATCCAACGGCC 342
||| ||||||||| | || ||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 223 AAAACTCCCAGTCGCTGGTCAATACTCTCCTCGCGATTTCGTTCTCTCCATCCAACGGCC 282
Query 343 TAGATCTC-TCATCATCCTCGTCAAAGCTGGAGCTCCCGTTGACCAAACAATCGACGC-C 400
|||||| | | |||||||| |||||||| || ||||||||||||||||||||| ||| |
Sbjct 283 TAGATC-CGTTATCATCCTTGTCAAAGCCGGTGCTCCCGTTGACCAAACAATCTCCGCAC 341
Query 401 TTCTCCGAATACATGGAGCCAGGAGATTGCATCATCGACGGTGGAAACGAATGGTATCAG 460
| |||||||||||||||||| || ||||| ||||||||||||||||| || |||||||||
Sbjct 342 T-CTCCGAATACATGGAGCCTGGTGATTGTATCATCGACGGTGGAAATGAGTGGTATCAG 400
Query 461 AACACAGAGCGACGGATC-TCCGAAGCTGAGCAA-AAAGGATTGCTCTATTTAGGTATGG 518
|||||||| ||||| ||| | ||||||||| || ||||||||||| |||||||||||||
Sbjct 401 AACACAGAACGACGAATCGTT-GAAGCTGAG-AAGAAAGGATTGCTTTATTTAGGTATGG 458
Query 519 GAGTCTCCGGCGGCGAAGAAGGAGCTCGTAACGGTCCTTCG-TTAATGCCTGGTGGATCA 577
||||||| || || ||||||||||||||||| ||||||||| ||| |||||||||||||
Sbjct 459 GAGTCTCTGGTGGTGAAGAAGGAGCTCGTAATGGTCCTTCGCTTA-TGCCTGGTGGATC- 516
Query 578 TTTCAA-GCTTATGATAACATCAAAGATATT-TTGGAGAAAGTCGCAGCTCAAGTTGAAG 635
||||| || ||| |||| | ||||||||| ||| ||||||| || |||||||||||||
Sbjct 517 TTTCACTGCGTATAATAATGTTAAAGATATTCTTG-AGAAAGTTGCTGCTCAAGTTGAAG 575
Query 636 ATGGACCTTGTGTTACTTACATCGGAGAAGGTGGATCTGGAAATTTCGTGAAGATGGTTC 695
|||| ||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||
Sbjct 576 ATGGTCCTTGTGTTACTTACATTGGAGAAGGTGGATCTGGGAATTTTGTGAAAATGGTTC 635
Query 696 ATAATGGGATTGAGTATGGAGATATGCAATTGATCTCTGAAGCTTATGATGTGTTGAAGA 755
||||||||||||| ||||| |||||||| |||| || || || ||||||||||||||||
Sbjct 636 ATAATGGGATTGAATATGGTGATATGCAGCTGATTTCGGAGGCGTATGATGTGTTGAAGA 695
Query 756 ACGTTGGTGGATTAAGCAACGAGGAGCTTG-CTGAGAT-TTTCACTGAGTGGAATTC-AG 812
||||||||||||| || || || || ||| ||||||| ||| || ||||||||| | ||
Sbjct 696 ACGTTGGTGGATTGAGTAATGATGAA-TTGGCTGAGATCTTT-ACGGAGTGGAAT-CGAG 752
Query 813 GTGAGCTTGAGAGTTTCTTGGTTGAGATAACTTCTGATATATTTAGGGTTAAGGATGAGT 872
|||||||||||||||||||||||||||| || || ||||| ||||||||||||||||| |
Sbjct 753 GTGAGCTTGAGAGTTTCTTGGTTGAGATTACATCGGATATTTTTAGGGTTAAGGATGA-T 811
Query 873 T-TGGTGATGGAGAGTTAGTTGATAAGATTTTGGATAAGACTGGTATGAAAGGTACTGGG 931
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 812 TATGGTGATGGAGAGTTAGTGGATAAGATTTTGGATAAGACTGGTATGAAAGGTACCGGG 871
Query 932 AAATGGACGGTGCAGCAAGCGGCGGAGCTGTCTGTTGCAGCTCCGACGATTGCTGCTTCG 991
||||||||||| ||||| ||||| ||||| |||||||| || || || |||||||| ||
Sbjct 872 AAATGGACGGTTCAGCAGGCGGCTGAGCTTTCTGTTGCGGCGCCTACTATTGCTGCGTCT 931
Query 992 TTGGATTGTAGGTATTTGAGTGGGTTGAAAGATGAGAGGGAGAATGCAGCGAAAGTGTTG 1051
||||||||||| || |||||||| ||||| |||||||| |||||||| || |||||||||
Sbjct 932 TTGGATTGTAGATACTTGAGTGGATTGAAGGATGAGAGAGAGAATGCTGCTAAAGTGTTG 991
Query 1052 -AGGGAAGCTGGATTGAAAGAAGAGATTGGTTCTGCGTCGAGTGGAATCGATAAGAAGAG 1110
| | ||||||| ||||| || || |||||||||||||| |||| | |||||||||||
Sbjct 992 GAAG-AAGCTGGTTTGAAGGAGGATATTGGTTCTGCGTCTCGTGGTGTTGATAAGAAGAG 1050
Query 1111 ATTGGTTGATGATGTTAGGCAAGCTTTGTATGCTTCCAAGATTTGTAGTTATGCTCAAGG 1170
||| |||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1051 GTTGATTGATGATGTGAGGCAAGCTTTGTATGCTTCTAAGATCTGTAGTTATGCTCAAGG 1110
Query 1171 GATGAATTTGCTTAGAGCTAAGAGTTTAGAGAA-GAGTTGGAACTTGAATTTTGGTGAAT 1229
||||||||||||||| ||||||||||||||||| | || ||| |||||||| ||||||
Sbjct 1111 GATGAATTTGCTTAGGGCTAAGAGTTTAGAGAAAGGGTGGGAT-TTGAATTTGGGTGAAA 1169
Query 1230 TGGCTAGGATTTGGAAAGGTGGTTGTATTATAAGAGCGGTTTTCTTGGATAGGATCAAGA 1289
||||||||||||||||||| || |||||||| || ||||| |||||||| ||||||||||
Sbjct 1170 TGGCTAGGATTTGGAAAGGCGGGTGTATTATCAGGGCGGTATTCTTGGACAGGATCAAGA 1229
Query 1290 AAGCTTACCAGAGGAACCCGGACTTGGCTAGTCTT-GTGGTTGATCCTGAGTTTGCTAAA 1348
||||||| ||||| |||||| | ||||| | ||| |||||||||||||| |||||||||
Sbjct 1230 AAGCTTATCAGAGAAACCCGAATTTGGCAAA-CTTAGTGGTTGATCCTGATTTTGCTAAA 1288
Query 1349 GAGATGGTTCAGAGACAAGCTGCTTGGAGAAGAGTTGTTGGT-TTGGCTGTTTCTGCTGG 1407
|||||||||||||| |||||||| ||||| ||||| || ||| ||| || | ||||||||
Sbjct 1289 GAGATGGTTCAGAGGCAAGCTGCGTGGAGGAGAGTGGTGGGTCTTG-CTATCTCTGCTGG 1347
Query 1408 GATTAGCACGCCTGGAATGTGTGCTAGTCTT-GCGTATTTCGATACTTATAGACGTGCTA 1466
||| ||||| || |||||||| || ||| || ||||||||||| ||||| || ||||| |
Sbjct 1348 GATAAGCACACCAGGAATGTGCGCAAGT-TTAGCGTATTTCGACACTTACAGGCGTGCCA 1406
Query 1467 GATTGCCGGCGAATCTGGTTCAGGCGCAGAGAGATCTCTTTGGAGCTCACACTTATGAGA 1526
|||| || ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1407 GATTACCTGCGAATCTGGTTCAGGCGCAGAGAGATCTCTTTGGAGCTCATACATATGAGA 1466
Query 1527 GAACCGATCGTCCTGGTGCGTACCATACTGAATGGACTAAGCTTGCCAGGAAGA 1580
||||||||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 1467 GAACCGATCGTCCTGGTGCATACCACACTGAATGGACTAAGCTTGCAAGGAAGA 1520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67914906835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5