BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G64200.1

Length=725
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg315014 jgi|Araly1|315014|fgenesh1_pm.C_scaffold_2000047          1157    0.0  


> Ahg315014 jgi|Araly1|315014|fgenesh1_pm.C_scaffold_2000047
Length=864

 Score = 1157 bits (626),  Expect = 0.0
 Identities = 674/698 (97%), Gaps = 0/698 (0%)
 Strand=Plus/Plus

Query  1    ATGAACGACGCCGATGCTTCCATCCAGATCCAGCAGATGGTTAGGTTTATCCGCCAGGAA  60
            ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct  1    ATGAACGACGCCGATGCTTCCGTCCAGATCCAGCAGATGGTCAGGTTTATCCGCCAGGAA  60

Query  61   GCCGAAGAAAAGGCTAACGAGATCTCCATCTCCTCTGAAGAAGAATTCAACATTGAGAAA  120
            ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct  61   GCCGAAGAAAAGGCTAACGAGATCTCCATCTCCTCCGAGGAAGAATTCAACATTGAGAAA  120

Query  121  TTGCAGCTTGTTgaagcagagaagaagaagattagacaagagtatgagaagaaggagaaa  180
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TTGCAGATTGTTGAAGCAGAGAAGAAGAAGATTAGACAAGAGTATGAGAAGAAGGAGAAA  180

Query  181  caggtcgatgtcagaaagaagaTTGATTACTCAATGCAACTGAACGCATCGAGGATCAAA  240
            |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| 
Sbjct  181  CAGGTCGATGTCAGAAAGAAGATTGATTACTCGATGCAACTGAACGCGTCGAGGATCAAG  240

Query  241  GTTCTACAAGCGCAAGATGACATTGTCAATGCAATGAAAGAAGAGGCAGCTAAGCAACTC  300
            ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  241  GTTCTACAAGCCCAAGATGACATTGTCAATGCAATGAAAGAAGAGGCAGCTAAGGAACTC  300

Query  301  TTGAAAGTTAGCCAACATGGCTTTTTCAATCATCATCACCATCAGTATAAGCATCTCTTG  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  TTGAAAGTTAGCCAACATGGCTTTTTCAATCATCATCACCATCAGTATAAGCATCTCTTG  360

Query  361  AAAGATCTCATTGTTCAGTGTTTGCTTAGATTGAAAGAGCCTGCAGTGTTACTCCGTTGT  420
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct  361  AAAGATCTCATTGTTCAGTGTTTGCTTCGATTGAAAGAGCCTGCAGTGTTACTTCGTTGT  420

Query  421  CGTGAAGAAGATCTTGACATTGTTGAGTCTATGCTGGATGATGCTAGTGAAGAATATTGC  480
            ||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct  421  CGTAAAGAAGATCTTCACATGGTTGAGTCTATGCTGGATGATGCTAGTGAAGAATATTGC  480

Query  481  AAGAAAGCAAAGGTTCATGCTCCTGAGATTATTGTAGACAAGGACATTTTCCTTCCTCCT  540
            ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct  481  AAGAAAGCAAAGGTTCATGCTCCTGAGATCATTGTCGACAAGGACATTTTCCTTCCTCCT  540

Query  541  GCTCCTTCAGATGATGATCCTCATGCTCTTTCCTGTGCAGGAGGAGTGGTTTTGGCTTCT  600
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  541  GCTCCTTCAGATGATGATCCTCATGCTCTTTCCTGTGCAGGAGGAGTGGTGTTGGCTTCT  600

Query  601  CGTGATGGGAAAATCGTGTGTGAAAACACGCTTGATGCGAGGTTGGAGGTTGCCTTCCGC  660
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct  601  CGTGATGGGAAAATCGTGTGTGAAAACACGCTTGATGCGAGGTTGGAAGTTGCGTTCCGC  660

Query  661  AATAAACTTCCAGAGATCCGAAAGTCGCTCTTCGGCAA  698
            ||||||||||| ||||| |||||||| ||||| |||||
Sbjct  661  AATAAACTTCCCGAGATACGAAAGTCACTCTTTGGCAA  698



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26686041900


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5