BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64210.1
Length=1764
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337960 jgi|Araly1|337960|fgenesh1_pg.C_scaffold_2000059 2534 0.0
Ahg493820 jgi|Araly1|493820|fgenesh2_kg.7__3253__AT5G41680.1 265 1e-69
> Ahg337960 jgi|Araly1|337960|fgenesh1_pg.C_scaffold_2000059
Length=1767
Score = 2534 bits (1372), Expect = 0.0
Identities = 1637/1764 (93%), Gaps = 21/1764 (1%)
Strand=Plus/Plus
Query 16 ttcttcttctctttgattctctgttttgttctgatttcctctcagactcttgAAGACGAC 75
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 10 TTCTTCTTCTCTTTGATTCTCTGTTTTGTTCTCATTTCCTCTCAGACTCTTGACGACGAC 69
Query 76 AAGAAAGCTTTGCTTCATTTCTTGTCTAGTTTCAATTCTTCTCGTCTCCATTGGAACCAG 135
||||||||||||||| |||||||||||| ||| || || |||||||||||||||||||||
Sbjct 70 AAGAAAGCTTTGCTTGATTTCTTGTCTAATTTTAACTCGTCTCGTCTCCATTGGAACCAG 129
Query 136 AGCTCAGAC-GTTTGTCATAGCTGGACCGGTGTTACCTGCAACGAAAACGGAGATCGAAT 194
||||| | ||||||||| |||||||||| |||||||||||||||||| ||||||||||
Sbjct 130 AGCTC-TCCGGTTTGTCATCGCTGGACCGGAGTTACCTGCAACGAAAACCGAGATCGAAT 188
Query 195 TGTATCCGTTAGATTGCCTGCGGTTGGATTCAACGGTTTGATTCCTCCTTTCACCATCAG 254
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 TGTAGCCGTTAGATTGCCTGCGGTTGGATTCAACGGTTTGATTCCTCCTTTCACCATCAG 248
Query 255 TCGTCTCTCTTCTCTCAAGTTTCTAAGCCTTAGAAAGAACCATTTCACCGGAGACTTCCC 314
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 249 TCGTCTCTCTTCTCTCAAGTTTCTAAGCCTTAGAAAGAACCAATTCACCGGAGACTTCCC 308
Query 315 TTCTGATTTCACAAATCTCAAGAGCTTGACTCATCTCTACCTACAACATAACCACCTCTC 374
||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| ||||||
Sbjct 309 TTCTGATTTCAGAAATCTCAAGAACTTGACTCATCTCTATCTACAACATAACCGCCTCTC 368
Query 375 AGGTCCACTACTAGCT-AT-CTTCTCGGAGTTGAAGAATCTTAAGGTTCTTGATCTGTCT 432
||||| ||| | | || || ||| |||||||||||||||||||||||||||||||||
Sbjct 369 GGGTCCTTTACCGG-TGATTCT-CTCAGAGTTGAAGAATCTTAAGGTTCTTGATCTGTCT 426
Query 433 AACAATGGATTCAACGGAAGCATCCCAACCTCTCTTTCAGGATTGACTAGCCTTCAAGTC 492
|||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| ||||
Sbjct 427 AACAATGGATTCAACGGAAGCATCCCAAAGTCTCTTTCAGGTTTGACCAGCCTTCGAGTC 486
Query 493 TTGAATCTTGCAAACAATTCATTCTCAGGGGAAATTCCAAATCTTCATCTTCCAAAACTG 552
|||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 487 TTGAATCTTGCAAACAATTCATTCTCAGGGGAGATTCCTGATCTTGATCTTCCAAAACTG 546
Query 553 AGTCAGATCAACTTGTCCAACAACAAGCTCATCGGTACAATACC-AAAGTCTCTTCAAAG 611
||||| |||||||| ||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 547 AGTCAAATCAACTTCTCCAACAACAAGCTCATCGGTACAATACCGAAA-TCTCTTCAAAG 605
Query 612 ATTCCAAAGTTCAGCTTTTTCTGGCAACAACCTTACCGAGAGGAAGAAACAACGCAAGAC 671
||||||||||||||| |||||||||||||| |||| |||||||||||||||| ||||||
Sbjct 606 ATTCCAAAGTTCAGCCTTTTCTGGCAACAAGCTTAACGAGAGGAAGAAACAAAACAAGAC 665
Query 672 TCCTTTCGGGTTAAGCCAACTTGCTTTCTTGCTGATTCTGTCTGCAGCTTGCGTTTTGTG 731
|||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||
Sbjct 666 TCCTTTCGGGTTAAGCCAGCTTGCTTTCTTGCTGATTCTGGCTGCAGCTTGCATTTTGTG 725
Query 732 TGTTTCCGGATTATCATTCATAATGATCACTTGTTTCGGGAAGACTAGAATCTCCGGGAA 791
|||||| ||||| || || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 726 TGTTTCAGGATTTTCCTTTATAATGATCACTTGTTTCGGGAAGACTAGAATCTCGGGGAA 785
Query 792 GTTGCGAAAGAGAGACTCGTCTTCTCCTCCAGGAAACTGGACATCTAGAGATGATAACAC 851
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 786 GTTGCGGAAGAGAGACTCGTCTTCTCCTCCAGGAAACTGGACATCTAGAGATGGTAACAC 845
Query 852 TGAAGAAGGCGGGAAGATCATCTTCTTTGGTGGAAGAAACCACTTATTTGATTTAGATGA 911
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 846 CGAAGAAGGCGGGAAGATCATCTTCTTCGGTGGAAGAAACCACTTATTTGATCTAGATGA 905
Query 912 TTTGCTAAGCTCATCTGCAGAAGTTTTGGGGAAGGGTGCTTTTGGTACAACCTATAAGGT 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 TTTGCTAAGCTCATCTGCAGAAGTTTTGGGGAAGGGTGCTTTTGGTACAACCTATAAGGT 965
Query 972 AACAATGGAGGACATGAGCACGGTCGTTGTAAAACGATTGAAGGAAGTTGTCGTTGGAAG 1031
| |||||||||||||||||||||| || || || |||||||||||||||||||| |||||
Sbjct 966 ATCAATGGAGGACATGAGCACGGTTGTAGTGAAGCGATTGAAGGAAGTTGTCGTGGGAAG 1025
Query 1032 ACGAGAGTTTGAGCAACAAATGGAGATCATTGGTATGATCAGACATGAAAATGTAGCTGA 1091
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1026 ACGAGAGTTTGAGCAACAAATGGAGGTCATTGGTATGATCAGACATGAAAATGTAGCTGA 1085
Query 1092 GCTAAAGGCTTACTACTACTCCAAAGACGATAAGCTCGCGGTTTATAGCTATTACAATCA 1151
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1086 GCTAAAGGCTTACTACTACTCCAAAGACGATAAGCTCGCGGTTTATAGCTATTACAGTCA 1145
Query 1152 TGGAAGCCTCTTCGAAATACTGCACGGAAACAGAGGA-AGGTATCATCGAGTACCGTTAG 1210
||||||||||||||| || |||||||||||||||||| || ||||||||||||| |||||
Sbjct 1146 TGGAAGCCTCTTCGAGATGCTGCACGGAAACAGAGGAGAG-TATCATCGAGTACTGTTAG 1204
Query 1211 ATTGGGATGCTAGACTGCGAATAGCAACCGGTGCAGCGAGAGGGCTAGCTAAAATCCACG 1270
|||||||||||||| || | ||||||||||| ||||||||||| |||||||||||||| |
Sbjct 1205 ATTGGGATGCTAGATTGAGGATAGCAACCGGGGCAGCGAGAGGACTAGCTAAAATCCATG 1264
Query 1271 AAGGGAA----G-----TTCATACATGGAAACATCAAATCCTCAAACATCTTCTTAGACT 1321
|||| || | ||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 1265 AAGGAAACAACGGGAAATTCATCCATGGAAACATCAAATCCTCCAACATATTCTTAGACT 1324
Query 1322 CACAATGCTATGGCTGCATAGGCGATGTTGGCTTGACGACAATCATGAGATCACTTCCTC 1381
||||||| ||||||||||| |||||| ||||||||||||||||||||||||| |||||||
Sbjct 1325 CACAATGTTATGGCTGCATCGGCGATATTGGCTTGACGACAATCATGAGATCTCTTCCTC 1384
Query 1382 AAACCACTTGCCTTACTTCTGGCTACCATGCACCTGAAATAACAGACACAAGAAGAAGCA 1441
||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 1385 AAACCACCTGCCTTACTTCGGGTTACCACGCACCTGAAATAACAGACACAAGAAGAAGCA 1444
Query 1442 CACAGTTTTCGGATGTATACAGCTTCGGTGTGGTATTACTGGAGCTCTTGACAGGGAAAT 1501
| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1445 CGCAGTTTTCGGATGTGTACAGCTTCGGTGTGGTATTACTCGAGCTCTTGACAGGGAAAT 1504
Query 1502 CACCAGTGAGTCAAGCAGAATT-AGTACCAACAGGAGGTGAGAACATGGACTTAGCTAGC 1560
| || | ||||| ||| || || |||| |||||| ||| || |||||||| ||||| |||
Sbjct 1505 CTCCGGCGAGTCCAGCGGA-TTCAGTAACAACAGAAGGCGAAAACATGGATTTAGCAAGC 1563
Query 1561 TGGATAAGATCTGTGGTGGCTAAAGAGTGGACTGGAGAAGTGTTTGATATGGAGATATTG 1620
||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1564 TGGATAAGATCAGTGGTGGCTAGAGAGTGGACTGGAGAAGTATTTGATATGGAGATATTG 1623
Query 1621 AGTCAATCAGGTGGTTTCGAGGAGGAGATGGTTGAGATGTTGCAAATAGGATTGGCTTGT 1680
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1624 AGTCAATCAGGTGGTTTCGAGGAGGAAATGGTTGAGATGTTACAAATAGGATTGGCTTGT 1683
Query 1681 GTTGCTCTGAAGCAACAAGAAAGACCTCATATAGCTCAAGTTTTGAAATTGATTGAAGAT 1740
|| ||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1684 GTAGCTCTGAAGGAACAGGAACGACCTCATATAGCTCAAGTTTTGAAATTGATTGAAGAT 1743
Query 1741 ATTCGATCAGTTGATGCAGAGTGA 1764
||||||||| ||||||||||||||
Sbjct 1744 ATTCGATCAATTGATGCAGAGTGA 1767
> Ahg493820 jgi|Araly1|493820|fgenesh2_kg.7__3253__AT5G41680.1
Length=1605
Score = 265 bits (143), Expect = 1e-69
Identities = 267/325 (82%), Gaps = 16/325 (5%)
Strand=Plus/Plus
Query 862 GGGAAGATCATCTTCTTTGGTGGAAGAAACCACTTA--TTTGATTTAGATGATTTGCTAA 919
||||| ||| | |||||||| ||||| ||| | || |||||||| ||||||||| | |
Sbjct 344 GGGAAAATCGTATTCTTTGGAGGAAGTAACTA--TACCTTTGATTTGGATGATTTG-TTA 400
Query 920 GCT-CATCTGCAGAAGTTTTGGGGAAGGGTGCTTTTGGT-ACAACCTATAAGGTAACAAT 977
||| | ||||||||| |||||||||| ||||||| | || |||||||| || ||| |
Sbjct 401 GCTGCCTCTGCAGAAATTTTGGGGAAAGGTGCTTAT-GTCACAACCTACAAAGTAGTTGT 459
Query 978 GGAGGACATGAGC-ACGGTCGTTGT-AAAACGATTGAAGGAAGTTGTCGTTGGAAGACGA 1035
|||||||| | || ||||| || || || | ||||| |||| || || || |||||||||
Sbjct 460 GGAGGACACG-GCAACGGTAGTAGTGAAGA-GATTGGAGGAGGTGGTTGTCGGAAGACGA 517
Query 1036 GAGTTTGAGCAACAAATGGAGATCATTGGTATGA-TCAGACATGAAAATGTAGCTGAGCT 1094
|||||||||||||||||||||||| |||||| || | || ||||| ||||||||||||||
Sbjct 518 GAGTTTGAGCAACAAATGGAGATCGTTGGTA-GAATAAGGCATGATAATGTAGCTGAGCT 576
Query 1095 -AAAGGCTTACTACTACTCCAAAGACGATAAGCTCGCGGTTTATAGCTATTACAATCATG 1153
|||| || ||||||| |||||| |||||||||| || |||||||||||||||| ||| |
Sbjct 577 TAAAGCCT-ACTACTATTCCAAAAACGATAAGCTTGCTGTTTATAGCTATTACAGTCAAG 635
Query 1154 GAAGCCTCTTCGAAATACTGCACGG 1178
||| ||| ||||| || ||||||||
Sbjct 636 GAAACCTATTCGAGATGCTGCACGG 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66200845810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5