BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G64220.1

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg924520 jgi|Araly1|924520|scaffold_200081.1                        268    9e-72


> Ahg924520 jgi|Araly1|924520|scaffold_200081.1
Length=293

 Score =  268 bits (145),  Expect = 9e-72
 Identities = 169/181 (93%), Gaps = 0/181 (0%)
 Strand=Plus/Plus

Query  54   ATCATCATCATCTTCGTCCTCCTCTGCATCATCAAAGTACAAGGTCTTCAAGGATTGGAC  113
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  92   ATCATCATCATCTTCTTCCTCCTCTGCATCATCAAAGTACAAGGTCTTCAAGGCTTGGAC  151

Query  114  CAACTGGTCATTACAGAAAGCCAAAGTCGCGACTCACTATGGTTTCATCCCTCTGATCAT  173
            ||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  152  CAACTGGTCATTGGAGAAAGCCAAAGTCGCGACTCACTATGGCTTCATCCCTCTGATCAT  211

Query  174  CATCATCGGCATGAACTCAGATCCTAAACCTCATCTTTTTCACCTCCTCTCTCCCGTTTA  233
            ||||||||||||||| || |||||||||||| || ||||||| ||||||  |||||||||
Sbjct  212  CATCATCGGCATGAATTCCGATCCTAAACCTGATATTTTTCAACTCCTCAGTCCCGTTTA  271

Query  234  A  234
            |
Sbjct  272  A  272



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8057723071


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5