BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64230.4
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906988 jgi|Araly1|906988|Al_scaffold_0002_69 632 1e-180
Ahg493816 jgi|Araly1|493816|fgenesh2_kg.7__3249__AT5G41700.4 451 4e-126
Ahg478172 jgi|Araly1|478172|fgenesh2_kg.3__873__AT3G08690.1 76.8 3e-13
> Ahg906988 jgi|Araly1|906988|Al_scaffold_0002_69
Length=447
Score = 632 bits (342), Expect = 1e-180
Identities = 364/375 (97%), Gaps = 0/375 (0%)
Strand=Plus/Plus
Query 327 GCCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATAATGGGTCCATCTGATAGTC 386
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 71 GCCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATAATGGGTCCATCCGATAGTC 130
Query 387 CTTATTCAGGCGGTGTCTTTCTCGTAACCATTCACTTCCCTCCGGATTATCCTTTCAAAC 446
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 131 CTTATTCAGGCGGAGTCTTTCTCGTAACCATTCACTTCCCTCCGGATTATCCGTTCAAAC 190
Query 447 CACCAAAGGTTGCATTCAGGACAAAAGTGTTCCACCCTAATGTCAACAGCAATGGAAGCA 506
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 191 CACCAAAGGTTGCATTTAGGACAAAAGTGTTTCACCCTAATGTCAACAGCAATGGAAGCA 250
Query 507 TTTGCCTTGACATTTTGAAAGAACAATGGAGTCCTGCACTCACCATATCGAAGGTTTTGC 566
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 251 TTTGCCTCGACATTTTGAAAGAACAATGGAGTCCTGCACTCACCATATCTAAGGTGTTGC 310
Query 567 TTTCGATATGTTCATTGTTAACGGACCCAAACCCAGATGATCCATTGGTTCCAGAGATTG 626
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 311 TTTCGATATGTTCATTGTTAACAGACCCAAACCCAGATGATCCATTGGTTCCAGAGATTG 370
Query 627 CTCACATGTACAAAACCGATAGAGCAAAGTATGAGTCTACTGCGAGAAGCTGGACTCAGA 686
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 371 CTCACATGTACAAAACCGATAGAGCTAAGTATGAGTCTACTGCGAGAAGCTGGACTCAGA 430
Query 687 AATATGCAATGGGAT 701
| |||||||||||||
Sbjct 431 AGTATGCAATGGGAT 445
Score = 119 bits (64), Expect = 5e-26
Identities = 68/70 (97%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 131 ATGGCTTCGAAAAGGATCTTGAAAGAGCTCAAGGATCTCCAGAAGGATCCTCCAACTTCC 190
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCTTCGAAACGGATCTTGAAAGAGCTCAAGGATCTTCAGAAGGATCCTCCAACTTCC 60
Query 191 TGCAGTGCTG 200
||||||||||
Sbjct 61 TGCAGTGCTG 70
> Ahg493816 jgi|Araly1|493816|fgenesh2_kg.7__3249__AT5G41700.4
Length=675
Score = 451 bits (244), Expect = 4e-126
Identities = 340/387 (88%), Gaps = 4/387 (1%)
Strand=Plus/Plus
Query 314 CATGTTTTGTTGTGCCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATAATGGGT 373
||| |||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 CAT-TTTTGTAG-GTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATAATGGGT 186
Query 374 CCAT-CTGATAGTCCTTATTCAGGCGGTGTCTTTCTCGTAACCATTCACTTCCCTCCGGA 432
|| | | || ||||| |||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 187 CC-TGCAGAGAGTCCGTATTCAGGCGGTGTGTTTCTCGTTACCATTCACTTCCCTCCTGA 245
Query 433 TTATCCTTTCAAACCACCAAAGGTTGCATTCAGGACAAAAGTGTTCCACCCTAATGTCAA 492
|| || |||||||| |||||||||||||| ||||| || ||||| ||||||||| ||||
Sbjct 246 CTACCCATTCAAACCTCCAAAGGTTGCATTTAGGACGAAGGTGTTTCACCCTAATATCAA 305
Query 493 CAGCAATGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGTCCTGCACTCACCAT 552
|||||| |||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 306 CAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCCGCTCTCACCAT 365
Query 553 ATCGAAGGTTTTGCTTTCGATATGTTCATTGTTAACGGACCCAAACCCAGATGATCCATT 612
|| ||||| ||||| ||||||||||| ||||||| || ||||| |||||||| || ||
Sbjct 366 TTCCAAGGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCGTT 425
Query 613 GGTTCCAGAGATTGCTCACATGTACAAAACCGATAGAGCAAAGTATGAGTCTACTGCGAG 672
||| ||||||||||| ||||||||||||||||| ||||| ||||| ||| | ||||| ||
Sbjct 426 GGTGCCAGAGATTGCACACATGTACAAAACCGACAGAGCCAAGTACGAGGCCACTGCAAG 485
Query 673 AAGCTGGACTCAGAAATATGCAATGGG 699
|| |||||||||||| ||||| |||||
Sbjct 486 AAACTGGACTCAGAAGTATGCCATGGG 512
> Ahg478172 jgi|Araly1|478172|fgenesh2_kg.3__873__AT3G08690.1
Length=731
Score = 76.8 bits (41), Expect = 3e-13
Identities = 49/53 (92%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 131 ATGGCTTCGAAAAGGATCTTGAAAGAGCTCAAGGATCTCCAGAAGGATCCTCC 183
|||||||| || ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 102 ATGGCTTCTAAGAGGATTTTGAAGGAGCTCAAGGATCTCCAGAAGGATCCTCC 154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37894179498
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5