BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64270.1
Length=2214
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474925 jgi|Araly1|474925|fgenesh2_kg.2__55__AT1G64270.1 2636 0.0
> Ahg474925 jgi|Araly1|474925|fgenesh2_kg.2__55__AT1G64270.1
Length=2168
Score = 2636 bits (1427), Expect = 0.0
Identities = 1781/1950 (91%), Gaps = 32/1950 (2%)
Strand=Plus/Plus
Query 280 TTATGAGTTTAG-GCCAAAATTTTTTACATTTTTCTTAGAATTCACTGCAGG-ACTGTTA 337
|||||||||||| |||||| || |||| |||||| |||||||||||||| ||||||
Sbjct 234 TTATGAGTTTAGCCCCAAAA-AGTTCACATGTTTCTTTGAATTCACTGCAGGAACTGTTG 292
Query 338 TGGTCATGGCGATGGAAACCTTGAGAGAAAGGTTCTACCAAGTATGGTCCTGATGGTGTT 397
|| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 293 TGCTCATGGCGATAGAAACCTTGAGAGAAAGGTTCTATCAAGTATGGTCCTGATGGTGTA 352
Query 398 TACTATGAAGGATCCACTCCTAAAACGGTCAAG-GTTAGGCAAAAGACTGCGTTAAGTAC 456
||||||||||||||||||||||||| | || || |||||| |||||||||||||||| ||
Sbjct 353 TACTATGAAGGATCCACTCCTAAAAAGATC-AGAGTTAGGAAAAAGACTGCGTTAAGCAC 411
Query 457 ATTGTTGAATGGTCTTTATCCAATTTTTGGATTGCAGCT--GCAGAAATCAGTGTTCAAT 514
|||||||||||| |||||||||||||||||||| |||| ||||||||||| ||||||
Sbjct 412 ATTGTTGAATGGGCTTTATCCAATTTTTGGATT--AGCTAAGCAGAAATCAGAGTTCAAA 469
Query 515 ATATTTTGGTAGGTATCCTGTAGTTGTTTCACCGGATCTCTTTATCTATCTACTTCTTCA 574
||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 470 ATA-TTTGGTAGGTACCCTGTAGTTGTTTCACCGGATCTCTTTATGTATCTACTTCTTCC 528
Query 575 TGTAGTGAACGACACTAGTTTGGAGACTATGCTTGAAGTTCCAAGTTAT-CATCCTTCTA 633
||| |||||||||||||||||||| ||||||||||| |||||||| || ||||||||||
Sbjct 529 TGTGGTGAACGACACTAGTTTGGATACTATGCTTGAGGTTCCAAG-CATACATCCTTCTA 587
Query 634 T-AAGAAATGTGGAGTTGTATTTGGAAGTGAAATCGACATCTGATAATGTTACTGATCAT 692
| ||| |||||||||||||||||||||||||||||||| |||||| ||||| |||||| |
Sbjct 588 TAAAG-AATGTGGAGTTGTATTTGGAAGTGAAATCGACTTCTGATGATGTTGCTGATCCT 646
Query 693 GCTGCTTGTTCATCCGTAATAGAATATCCCGCTAGTTCCTCGAATACACAGAGGACGCAA 752
|||||||||||||| ||| | ||| |||| |||||||||||||| | ||||||||| ||
Sbjct 647 GCTGCTTGTTCATCAGTATTGGAAAATCCTGCTAGTTCCTCGAAAAGACAGAGGACCCAG 706
Query 753 CAACCCCAAGAAGCTACTGATTATGTGTCACATGCATCTGTGAAAGTAGAGAGAGATAAT 812
|||||||| |||||||||| ||||||||||||| ||||||| ||||||||||| ||||||
Sbjct 707 CAACCCCATGAAGCTACTGGTTATGTGTCACATCCATCTGTTAAAGTAGAGAGGGATAAT 766
Query 813 GGTTTAGAGGTTCAGGGAGTGGGTAACAGTAACGGGTGGATTGAAGACGAGGAAAATTCT 872
||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 767 GGTTTAGAGATTCAGGGAGTGGGTAATAGTAACGGGTGGATTGAAGACGAGGAACATTCT 826
Query 873 GACTTCGGAAATGGTAGCACTCGTGGAGGTGGGGATGGAGAAATAACGGATAAAAACTCG 932
||||| |||||||||||||||| ||||||||| ||||||||||| |||||||||||||||
Sbjct 827 GACTTTGGAAATGGTAGCACTCATGGAGGTGGAGATGGAGAAATGACGGATAAAAACTCG 886
Query 933 GGTTCAGATGATGCACACAAGG-TTTGAATGTGCCAGGCTTAGAGGTATTACCGTATGCG 991
||||||||||||| ||| |||| ||||||||||||||||||||| | || | || || |
Sbjct 887 GGTTCAGATGATGTACAGAAGGATTTGAATGTGCCAGGCTTAGAAGCATCAGCGAATCCA 946
Query 992 TGCTTATTAAGTAAAGGTGTTGTTGATTCGAGTGCTTCAAAACAGT-GTACTTTGTCTAG 1050
|||||||||| ||||||||| || ||||||||||||||||||| || || | |||| ||
Sbjct 947 TGCTTATTAAATAAAGGTGTCGTCGATTCGAGTGCTTCAAAACCGTGGT-CGCTGTCCAG 1005
Query 1051 TTTGTGGATTGATGATCATGAATTGCGTGTAGGGTTGTGTTTTAAAGATAGGGATGAGCT 1110
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1006 TTTGTGGGTTGATGATCATGAATTGCGTGTAGGGTTGTGTTTTAAAGATAGAGATGAGCT 1065
Query 1111 GAAGAAGGCGGTGGACTGGTGTTCCATTAGAGGGCAGCAAAAGTGTGTAGTACAAGAGAT 1170
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1066 GAAGAAGGCGGTGGACTGGTGTTCCATTAGAGGGCAGCAAAAGTGTGTAGTAAAAGAGAT 1125
Query 1171 TGAGAAGGACGAGTATA-CGTTTAAATGCATCAGATGGAAATGCAATTGGTCGCGTCGGG 1229
||||||||| ||||||| | |||||||||||||||||||||||||||||||| | |||||
Sbjct 1126 TGAGAAGGATGAGTATATC-TTTAAATGCATCAGATGGAAATGCAATTGGTCACTTCGGG 1184
Query 1230 CAGATTGAATAGAAGAACATGGACTTGTTAAGATAACTAAGTGTAGTTGGTCCACATACT 1289
||| | ||||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||
Sbjct 1185 CAGCTAGAATAGAAGAACATGGACTCGTTGAGATAACCAAGTGTAGT-GGTCCACATACT 1243
Query 1290 TGTTGTTCTATTAAGCCGGAAAACTTCAACTTGTAATTTGCAGCAGAAGAGATTGAGTGT 1349
||||||||||||||||| ||||| |||||| || |||||||||||||||||||||| |||
Sbjct 1244 TGTTGTTCTATTAAGCCAGAAAATTTCAACGTGGAATTTGCAGCAGAAGAGATTGAATGT 1303
Query 1350 CTGATCAGGGTACAACCCACTCTAACA---GCAGAGTTGAAAAGTTTGGTGACATGCTTA 1406
|||||||||||||||| || |||||| | ||||||||||| ||||| ||||||||||
Sbjct 1304 TTGATCAGGGTACAACCTACACTAACAATTGTAGAGTTGAAAAATTTGGCGACATGCTTA 1363
Query 1407 AAACTTCAAAGCTGCGGGCAGCAGAACAGGAAGTAATCAAAGATCAGAGTTTCAGAGTAT 1466
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1364 AAACTTCAGAGCTGCGGGCAGCAAAACAGGAAGTAATCAAAGATCAGAGTTTCAGAGTAT 1423
Query 1467 TGCCTAAACTAATTGGCTGCATTTCACTCATCTAATGGGCTACTTGTGGACTG-CAATAT 1525
|||||||| |||| |||||| ||||||||||||||||||||||| || ||||| ||||||
Sbjct 1424 TGCCTAAATTAAT-GGCTGCGTTTCACTCATCTAATGGGCTACTAGTTGACTGGCAATAT 1482
Query 1526 GAGCTTTTCCCTAATCCTGAATTTGCATCCTTCGGTGGCGCGTTTTGGGCGTTTCCACAG 1585
|||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1483 GAGCTTTTTCCTAATCCTGAATTTGCATCCTTTGGTGGCGTGTTTTGGGCGTTTCCACAG 1542
Query 1586 TCCATTGAAGGGTTTCAACACTGTAGACCTCTGATCATAGTGGATTCAAAAGACTTGAAC 1645
|||||||| ||||||| ||||||||||||||| ||||||||||| | ||||||||||||
Sbjct 1543 TCCATTGATGGGTTTCGACACTGTAGACCTCTAATCATAGTGGACACCAAAGACTTGAAC 1602
Query 1646 GGCAAGTACCCTATGAAATTGATGATTTCCTCAGGACTCGACGCTGATGATTGCTTTTTC 1705
|| |||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||
Sbjct 1603 GGTAAGTACCCTATGAAATTGATGATTGCCTCAGGAGTCGAAGCTGATGATTGCTTTTTC 1662
Query 1706 CCGCTTGCCTTTCCGCTTACCAAAGAAGTGTCCACTGATAGTTGGCGTTGGTTTCTCACT 1765
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1663 CCGCTTGCATTTGCGCTTACCAAAGAAGTGTCCACTGATAGTTGGCGTTGGTTTCTTGCT 1722
Query 1766 A-ATATCAGAGAGAAGGTAACACAAAGGAAAGACGTTTGCCTCGTCTCCAGTCCTCACCC 1824
| ||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1723 GGA-ATCCGAGAGAAGGTAACACAAAGGAAAGACGTTTGCCTCATCTCCAGTCCCCACCC 1781
Query 1825 GGACATAGTTGCTGTTATTAACGAACCCGGATCACTGTGGCAAGAACCTTGGGTCTATCA 1884
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 1782 GGACATAGTTGCTGTTATTAACGAACCCGGGTCACTGTGGCAAGAACCCTGGGTTTATCA 1841
Query 1885 CAGGTTCTGTCTGGATTGTTTTTGCTTACAATTCCATGATATTTTTGGAGACTACAACCT 1944
|||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1842 CAGGTTCTGTCTGGATCGTTTTTGCTTAAAATTCCATGATATTTTTCAAGACTACAACCT 1901
Query 1945 GGTGAGCCTTGTGAAGCAGGCTGGATCCACAAGTCAGAAGGAAGAATTTGATTCCTACAT 2004
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1902 AGTGAGCCTTGTGAAGCAGGCTGGATCCACGAGTCAGAAGGAAGAATTTGATTCCTACAT 1961
Query 2005 AAAGGACATCAAAAAGAAG-GACTCAGAAGCTCGGAAATGGTTAGCCCAATTCCCTCAAA 2063
|||||||| |||||||| | |||||||||| |||||||||||| ||||||||||||||
Sbjct 1962 GAAGGACATTGAAAAGAAGAG-CTCAGAAGCTTGGAAATGGTTAGACCAATTCCCTCAAA 2020
Query 2064 ATCAGTGGGCTCTGGCTCATGACCAGTGGTCGGAGATAT-GGAGTCATGACGATAGAAAC 2122
|||||||||||||||||||||| ||| ||||||||| | ||||||||||||||||||||
Sbjct 2021 CTCAGTGGGCTCTGGCTCATGAC-AGTAGTCGGAGAT-TCGGAGTCATGACGATAGAAAC 2078
Query 2123 AGAAGATTTGAGGGCAATTTGTGAAAGCTTTCAGTCTCTTGGTCTATCAGTGACAGCGAA 2182
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 2079 AGAAGATTTGTTTGCAATTTGTGAAAGCTTTCAGTCTCTTGGTCTGTCAGTGACAGCAAA 2138
Query 2183 CGCACCTGCACATGTGGGAAGTTTCAATCG 2212
||||||||||| ||||||||||||||||||
Sbjct 2139 CGCACCTGCACGTGTGGGAAGTTTCAATCG 2168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83341456060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5