BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64280.1
Length=2522
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474924 jgi|Araly1|474924|fgenesh2_kg.2__54__AT1G64280.1 2970 0.0
> Ahg474924 jgi|Araly1|474924|fgenesh2_kg.2__54__AT1G64280.1
Length=2258
Score = 2970 bits (1608), Expect = 0.0
Identities = 2094/2318 (90%), Gaps = 75/2318 (3%)
Strand=Plus/Plus
Query 1 GATGCTTCTTCATATCTCACCACCACTCTCGTTGACTTGACTTGGCTCTGCTCGTCAATG 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 GATGCTTCTTCATATCTCACCACCACTCTCGTTGACTTGACTTGGCTCTTCTCGTCAATG 60
Query 61 GTTATCTTCGATCTTTAACCAAATCCAGTTGATAAGGTCTCTTCGTTGATTAGCAGAGAT 120
||| ||| ||||| ||| |||||| | ||||||||||| |||||||||||| | ||||||
Sbjct 61 GTTCTCTGCGATC-TTAGCCAAAT-CTGTTGATAAGGTTTCTTCGTTGATTGGTAGAGAT 118
Query 121 CTCTTTAATTTGTGAATTTCAATTCATCGGAACCTGTTGATGGACACCACCATTGATGGA 180
||| ||||||| || |||||||||||||||||||||||||| | |||||||||||||
Sbjct 119 CTC-GAAATTTGTCAAATTCAATTCATCGGAACCTGTTGATGG--A-CACCATTGATGGA 174
Query 181 TTCGCCGATTCTTATGAAATCAGCAGCACTAGTTTCGTCGCTACCGATAACACCGACTCC 240
||||||||||||||||| |||||| |||||| |||| ||||||||||||| || || ||
Sbjct 175 TTCGCCGATTCTTATGACATCAGCGGCACTACTTTCTTCGCTACCGATAATACAGAGTCT 234
Query 241 TCTATTGTTTATCTGGC--C-GCCGAACAAGTACTCACCGGACCTGATGTATCTGCTCTG 297
|||||||||| || ||| | | ||||||| | | || ||||||||||||||||||||||
Sbjct 235 TCTATTGTTTTTCCGGCGGCAGGCGAACAACTTCCCAGCGGACCTGATGTATCTGCTCTG 294
Query 298 CAATTGCTCTCCAACAGCTTCGAATCCGTCTTTGACTCGCCGGATGATTTCTACAGCGAC 357
||||||||||||||||||||||||||||| |||||| |||||| || ||||||||||||
Sbjct 295 CAATTGCTCTCCAACAGCTTCGAATCCGTGTTTGACAAGCCGGAAGAGTTCTACAGCGAC 354
Query 358 GCTAAGCTTGTTCTCTCCGACGGCCGGGAAGTTTCTTTCCACCGGTGCGTTTTGTCAGCG 417
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 355 GCTAAGCTTGTTCTCTCCGACGGCCGGGAAGTATCTTTCCACCGCTGCGTTTTGTCAGCA 414
Query 418 AGAAGCTCTTTCTTCAAGAGCGCTTTAGCCGCCGCTAAGAAGGAGAAAGACTCCAACAAC 477
|||||||| |||||||||| |||||||||||||||||||||||||||||||| | ||||
Sbjct 415 AGAAGCTCCTTCTTCAAGAACGCTTTAGCCGCCGCTAAGAAGGAGAAAGACT-C--CAAC 471
Query 478 ACCGCCGCCGTGAAGCTCGAGCTTAAGGAGATTGCCAAGGATTACGAAGTCGGTTTCGAT 537
| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 472 A---CCGCCGTGAAGCTCGAGCTGAAGGAGATTGCTAAGGATTACGAAGTCGGTTTCGAT 528
Query 538 TCGGTTGTGACTGTTTTGGCTTATGTTTACAGCAGCAGAGTGAGACCGCCGCCTAAAGGA 597
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 529 TCGGTTGTGGCTGTTTTGGCTTATGTTTACAGCAGCAGAGTGAGGCCGCCGCCTAAAGGA 588
Query 598 GTTTCTGAATGCGCAGACGAGAATTGCTGCCACGTGGCTTGCCGGCCGGCGGTGGATTTC 657
||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 589 GTTTCCGAATGCGCAGACGAGAATTGCCACCACGAGGCTTGCCGGCCGGCGGTGGATTTC 648
Query 658 ATGTTGGAGGTTCTCTATTTGGCTTTCATCTTCAAGATCCCTGAATTAATTACTCTCTAT 717
||||||||||||||||||||||| |||||||||| |||||| |||||| ||||||| |||
Sbjct 649 ATGTTGGAGGTTCTCTATTTGGCCTTCATCTTCAGGATCCCGGAATTAGTTACTCTGTAT 708
Query 718 CAGAGGCAC-TTATTGGACGTTGTAGACAAAGTTGTTATAGAGGACACATTGGTTATACT 776
||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 709 CAGAGGC-CTTTATTGGATGTTGTAGACAAAGTTGTTATAGAGGACACATTGGTTATACT 767
Query 777 CAAGCTTGCTAATATATGTGGTAAAGCTTGTATGAAGCTATTGGATAGATGTAAAGAGAT 836
|||||||||||||||||||||| ||||||||| ||| |||||||||||||| ||||||||
Sbjct 768 CAAGCTTGCTAATATATGTGGTGAAGCTTGTAAGAAACTATTGGATAGATGCAAAGAGAT 827
Query 837 TATTGTCAAGTCTAATGTAGATATG-GTTAGTCTTGAAAAGTCATTGCCGGAAGAGCTTG 895
||||||| |||||||||||||| | || ||| |||| |||||||||||| |||||||
Sbjct 828 TATTGTCCTGTCTAATGTAGATA-GAGTCAGTATTGAGAAGTCATTGCCGCCAGAGCTT- 885
Query 896 TT-AAAGAGATAATTGATAGAC-GTAAAGAGCTTGGTTTGGAGGTACCTAAAGTAAAGAA 953
|| |||||||||| ||||| || ||||||||||||||||||||||||||| | || | ||
Sbjct 886 TTCAAAGAGATAACTGATA-ACCGTAAAGAGCTTGGTTTGGAGGTACCTATACTAGACAA 944
Query 954 ACATGTCTCGAATGTACATAAGGCACTTGACTCGGATGATATTGAGTTAGTCAAG--TTG 1011
||||||||| ||| |||||||||||||||||||||||||| | |||||||| ||| ||
Sbjct 945 ACATGTCTCTAATATACATAAGGCACTTGACTCGGATGATGTCGAGTTAGTGAAGCATT- 1003
Query 1012 CTTTTGAAAGA-GGATCACACCAATCTAGATGATGCGTGTGCTCTTCATTTCGCTGTTGC 1070
|||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 -TTTTGACAGAAGGC-CACACCAATCTAGATGATGCGTGTGCTCTTCATTTCGCTGTTGC 1061
Query 1071 ATATTGCAATGTGAAGACCGCAACAGATCTTTTAAAACTTGATCTTGCCGATGTCAACCA 1130
||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1062 ATATTGCGATGTGAAGACCGCAACAGATCTCCTAAAACTGGATCTTGCCGATGTCAACCA 1121
Query 1131 TAGGAATCCGAGGGGATATACGGTGCTTCATGTTGCTGCGATGCGGAAGGAGCCACAATT 1190
||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1122 TAGAAATCCGAGGGGATACACGGTGCTTCATGTCGCTGCGATGCGCAAGGAGCCACAATT 1181
Query 1191 GATACTATCTCTATTGGAAAAAGGTGCAAGTGCATCAGAAGCAA-CTTTGGAAGGTAGAA 1249
||||||||||||||||||||||||||||||||||||||| | || | |||||||||||||
Sbjct 1182 GATACTATCTCTATTGGAAAAAGGTGCAAGTGCATCAGA-GAAAACGTTGGAAGGTAGAA 1240
Query 1250 CCGCACTCATGATCGCAAAACAAGCCACTATGGCGGTTGAATGTAATAATATCCCGGAGC 1309
| || ||| |||||||||||| || |||||||||||| |||| ||||||| | ||||| |
Sbjct 1241 CTGCTCTCTTGATCGCAAAACGAGTCACTATGGCGGTCGAATATAATAATGTTCCGGAAC 1300
Query 1310 AATGCAAGCATTCTCTCAAAGGCCGACTATGTGTAGAAATACTAGAGCAAGAAGACAAAC 1369
|| ||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1301 GATTCAAGCATTCACTCAAAGGCCGACTATGCGTAGAAATACTAGAGCAAGGAGACAAAC 1360
Query 1370 GAGAACAAATTCCTAGAGATGTTCCTCCCTCTTTTGCAGTGGCGGCCGATGAATTGAAGA 1429
|||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1361 GAGAACCAATTCCTAGAGATGTTCCTCCCTCTTTTGCAGTGGCTGCTGATGAATTGAAGA 1420
Query 1430 TGACGCTGCTCGATCTTGAAAATAGAGTTGCACTTGCTCAACGTCTT-TTTCCAACGGAA 1488
||| ||||||||||||||| |||||||||||||| ||||||||| || ||||||||||||
Sbjct 1421 TGAGGCTGCTCGATCTTGAGAATAGAGTTGCACTAGCTCAACGT-TTGTTTCCAACGGAA 1479
Query 1489 GCACAAGCTGCAATGGAGATCGC-CGAAATGAAGGGAACATGTGAGTTCATAGTGACTAG 1547
||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1480 GCACAAGTTGCAATGGAGATCGCAC-AAATGAAGGGAACATGTGAGTTCATAGTGACTAG 1538
Query 1548 CCTCGAGCCTGACCGTCTCACTGGTACGAAGAGAACATCACCGGGTGTAAAGATAGCACC 1607
||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1539 CCTAGAGCCTGACCGTCTCACTGGTACAAAGAGAACATCACCGGACGTAAAGATAGCACC 1598
Query 1608 TTTCAGAATCCTAGAAGAGCATCAAAGTAGACTAAAAGCGCTTTCTAAAACCGTGGAACT 1667
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1599 TTTCAAAATCCTAGAAGAGCATCAAAGTAGACTAAGAGCGCTTTCTAAAACCGTGGAACT 1658
Query 1668 CGGGAAACGATTCTTCCCGCGCTGTTCGGCAGTGCTCGACCAGATTATGAACTGTGAGGA 1727
||||||||| || |||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1659 CGGGAAACGCTTTTTCCCGCGCTGTTCAGCAGTGCTCGACCAGATTATGGACTGTGAGGA 1718
Query 1728 CTTGACTCAACTGGCTTGCGGAGAAGACGACACTGCTGAGAAACGACTACAAAAGAAGCA 1787
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1719 CTTGACTCAACTGGCTTGCGGAGAAGAAGACACTCCTGAGAAACGACTACAAAAGAAGCA 1778
Query 1788 AAGGTACATGGAAATACAAGAGACACTAA-AGAAGGCCTTTAGTGAGGACAATTTGGAAT 1846
||||||||||||||||||||||| | ||| | |||||||||| |||||||||||||||||
Sbjct 1779 AAGGTACATGGAAATACAAGAGATATTAACA-AAGGCCTTTACTGAGGACAATTTGGAAT 1837
Query 1847 TAGGAAATTCGTCCCTGACAGATTCGACTTCTTCCACATCGAAATCAACCGGTGGAAAGA 1906
| ||||| |||||||| |||| |||| ||| ||||||| |||||||||| ||||||||||
Sbjct 1838 TTGGAAAATCGTCCCTCACAGCTTCGTCTTGTTCCACAACGAAATCAACTGGTGGAAAGA 1897
Query 1907 GGTCTAACCGTAAACTCTCTCATCGTCGTCGGTGAGACTCTTGCCTCTTAGTGTAATTTT 1966
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1898 GGTCTAACCGTAAACTCTCTCATCGACGTCGGTGAGACGCTTGCCTCTTAGTGTAATTTT 1957
Query 1967 TGCTGTACCATATAATTCTGTTTTCATGATGACTGTAACTGTTTATGTCTATCGTTGGCG 2026
|| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1958 TGTTGTACCATATAATTCTGTTTTCATGATGATTGTCACTGTTTATGTCTATCGTTGGCG 2017
Query 2027 TCATATAGTTTCGCTCTTCGTTTTGCATCCTGTGTATTATTGCTGCAGGTGTGCTTCAAA 2086
||||||||||||| ||||| ||||||||||||||| |||| |||||||||||| ||||||
Sbjct 2018 TCATATAGTTTCGTTCTTCATTTTGCATCCTGTGTTTTATCGCTGCAGGTGTGTTTCAAA 2077
Query 2087 CAAATGTTGTAACAATTTGAACCAATGGTATACAGATTTGTAATATATATTTATGTACAT 2146
|||||||||||||| ||||||||| |||||||| | | | | | ||| ||
Sbjct 2078 CAAATGTTGTAACATTTTGAACCAGCGGTATACA-A-----A-T-T-T------GTA-AT 2121
Query 2147 CAACAATAACCCATGATGGTGTTACAGAGTTG-CTAGAATCAAAGTGTGAAATAATGTCA 2205
| |||||||||||||||||||||||||| |||||||||||||||||||||| | ||
Sbjct 2122 -A----TAACCCATGATGGTGTTACAGAGTTGGCTAGAATCAAAGTGTGAAATAAAGACA 2176
Query 2206 AATTGTTCATCTGTTGGATATTTTCCACCAAGAACCAAAAGAATATTCAAGTTCCCTGAA 2265
|||||||||||| || | |||||||||||| ||||||||||||| ||
Sbjct 2177 AATTGTTCATCT-----AT-T----------GAACCAAAAGAAGATTCAAGTTCCCTTAA 2220
Query 2266 CTTCTGGCAACATTCATGTTATATGTATCTTCCTAATT 2303
||||||||||||||||||||||| |||| ||||| |||
Sbjct 2221 CTTCTGGCAACATTCATGTTATAAGTATTTTCCTTATT 2258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95073251520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5