BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64290.1
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924508 jgi|Araly1|924508|scaffold_200069.1 1170 0.0
Ahg337954 jgi|Araly1|337954|fgenesh1_pg.C_scaffold_2000053 959 0.0
> Ahg924508 jgi|Araly1|924508|scaffold_200069.1
Length=1138
Score = 1170 bits (633), Expect = 0.0
Identities = 924/1059 (87%), Gaps = 42/1059 (4%)
Strand=Plus/Plus
Query 109 AGCTACGAGTCATGGTTTGTCAATCTTAATCTCCTTAGAACCAATCGTATTTCGGGATAC 168
|||||||||||||||||| ||||||| ||||||| |||||||||| ||||||||||||||
Sbjct 101 AGCTACGAGTCATGGTTTCTCAATCTCAATCTCCGTAGAACCAATTGTATTTCGGGATAC 160
Query 169 TTCATACAACACTACATAGTAA-AAGGACACGAACTTCGAACCAGTTTTGTCCATGAGAG 227
||| |||||| |||| | || |||| || || ||| | |||| ||||||||||
Sbjct 161 TTCCTACAACGCTAC---G-AAGAAGGTTAC-AA-----AACAAATTTTTTCCATGAGAG 210
Query 228 GAGTGATTTACAAAACAATGGAGTCTCCATCGACTTTCTGCCACCCGGAATGATAAAGAT 287
|||||||||||||||||||||||||||||||| |||||||||| ||||| | | |||||
Sbjct 211 CAGTGATTTACAAAACAATGGAGTCTCCATCGATTTTCTGCCACACGGAAAGGTCAAGAT 270
Query 288 CGAAGCTTGTGATGCAAGTCATGGGATATTGCTTTGTGTTAAGT-ATACAAAAC-CATCA 345
|||||||||||||||||||||||||||||||||||||||| | | ||||| || || |
Sbjct 271 CGAAGCTTGTGATGCAAGTCATGGGATATTGCTTTGTGTTGA-TAATACAGGACTAAT-A 328
Query 346 -CGTGGATACATAGTCTTCAAACCAACCACTAAACAGTATCAGGTCATACCAAAGC-CAG 403
|| | ||||||||||| |||||||||||| |||||||||||| |||||||||| | ||
Sbjct 329 CCG-GAATACATAGTCTGCAAACCAACCACAAAACAGTATCAGATCATACCAAA-CACAA 386
Query 404 AAGTGAAGGG--TTGGGATATGTCATTGGGTTTAGCGGTAATCGGATTGAACCCTTTCCG 461
||||| ||| ||||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct 387 AAGTG--GGGATTTGGGATGTCTCATTCGGTTTAGCGGTAATCGGATTGAACCCTTTCCG 444
Query 462 GTATAAAATACAAAGGCTTTCGCA---GTCTCGGCGTATGTGTATGTCTCGGGGTATCTA 518
||||||||||| |||||||||||| |||||||||||||||||||||||||||| | ||
Sbjct 445 GTATAAAATACTAAGGCTTTCGCAGTCGTCTCGGCGTATGTGTATGTCTCGGGGTGTGTA 504
Query 519 CCATTTGAATCACAGAACTTTTATGTGCGAAGTTTTCGATTCTGATTCGTTTACCTGGAA 578
|| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 505 TTATGCGAATCACAGAACTTTTACGTGCGAAGTTTTCGATTCCGATTCGTTTACCTGGAA 564
Query 579 GAGATTAGAAAATTTGCGTCTACCAAAAACAGACAGATTAATTTTTTCCAACCCGATACA 638
||||||||||||||||||| |||||| ||||||| | |||||| ||||| ||||| ||||
Sbjct 565 GAGATTAGAAAATTTGCGTATACCAAGAACAGACGGTTTAATTCTTTCCCACCCGGTACA 624
Query 639 AGTTTC-GGG--GTTCTTGCATTGGATATCACGGAACAACAATGTGATCCGGTTTTGTCT 695
|| ||| ||| |||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 625 AGCTTCGGGGTTGTTCTTGCATTGGAGATCACGGAACAACAATGTGATCCGGTTCTGTCT 684
Query 696 CAAAACCGAAACTTGGTCCTTCTTCCATACTCCGAACTCTGATGTTTTCTCAGGATTAGT 755
|||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||
Sbjct 685 CAAAACCGAAACTTGGTCTTTCTTCCATACTCCGAACTTTGGTGTTTTCTCAGGATTAGT 744
Query 756 CAGATACGAAGGGAAGCTAGGTGCTATTCGTCAGTGGACAAACAAAGATCAAGAAGATGT 815
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 745 CAGATACGAAGGGAAGCTAGGTGCTATTTGTCAGTGGACAAACAAAGATCAAGAAAATGT 804
Query 816 TCACG-AGTTATGGGTTTTAAAGAGCAGTTTTGAAAAGTCGTGGGTTAAAGTGAAAGATA 874
||||| | ||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 805 TCACGGA-TTATGGGTTTTAACGAGCAGTTTTGAAAAGTCGTGGGAAAAAGTGAAAGATA 863
Query 875 TTAAAAGCATTGGAGTAGATTTGATTACGTGGACTCCAAGCAACGACGTTGTATTGTTTC 934
||||||||||||||| |||||| ||||||||||||| | | |||||||| || ||||||
Sbjct 864 TTAAAAGCATTGGAGAAGATTTCATTACGTGGACTCTAGGAAACGACGTCGTGTTGTTTT 923
Query 935 GTAGTAGTGATCGTGGTTGCCTCTACAACATAAACGCAGAGAAGTTGAATTTAGTTTATG 994
||| | | |||||| ||||||||||||||||||| ||||||||||||| |||||| ||
Sbjct 924 GTAATTGGGATCGTTTTTGCCTCTACAACATAAACACAGAGAAGTTGAAATTAGTTCATA 983
Query 995 CaaaaaaaGAGGGATCTGATTGT-TCTTTCGTTTGTTTTCCGTTTTGTTCTGATTACGAG 1053
|||| || | || || ||| |||| |||||| || |||||||||||||||||||||
Sbjct 984 CAAACAA-G-GG---CT--TTGCCTCTTACGTTTGCTTCCCGTTTTGTTCTGATTACGAG 1036
Query 1054 AGGGTTGATCTGAACGGAAGAAGCAACGGGCCGACACTTTaaaaaaaaaataaaaa-aaa 1112
| ||||||| | ||| |||||| || ||||||||||||| || ||||| ||||| |||
Sbjct 1037 AAGGTTGATAGGGACGAAAGAAGAAATGGGCCGACACTTTTAACAAAAAG-AAAAAGAAA 1095
Query 1113 TGGGCCGACAAATGCAAACGTAGTTGACAAGGATCTCAA 1151
| || |||||||||||||| |||| |||||| ||||||
Sbjct 1096 TAGGTCGACAAATGCAAAC-TAGTCAACAAGGCTCTCAA 1133
> Ahg337954 jgi|Araly1|337954|fgenesh1_pg.C_scaffold_2000053
Length=1161
Score = 959 bits (519), Expect = 0.0
Identities = 906/1083 (84%), Gaps = 66/1083 (6%)
Strand=Plus/Plus
Query 1 ATGAGTTCTCCGGTGATAAATCAAGACATGATCCAAGAATTTCTTTCTTATCTT-CCGGC 59
||||||||||||||| ||||||||||||| |||||||| ||||||||||| || |||||
Sbjct 1 ATGAGTTCTCCGGTGCTAAATCAAGACATAATCCAAGAGGTTCTTTCTTAT-TTCCCGGC 59
Query 60 GTCAAAAATCGGAAAATTCAGGCTCCTGAATAAAGAGTGCAACAAGAGAAGCTACGAGTC 119
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTCAAAAATTGGAAAATTCAGGCTCCTGAATAAAGAGTGCAACAAGAGAAGCTACGAGTC 119
Query 120 ATGGTTTGTCAATCTTAATCTCCTTAGAACCAATCGTAT-T-TCGGGATACTTCATACAA 177
||||||| ||||||| ||| ||| ||||||||| | ||| | || ||||||||| || ||
Sbjct 120 ATGGTTTCTCAATCTCAATTTCCATAGAACCAA-C-TATATCTCCGGATACTTCCTAGAA 177
Query 178 CACTACATAGTAA-AAGGACACGAACTTCGA-ACCAGTTTTGTCCATGAGAGGAGTGATT 235
| |||| | || |||| || ||||| || ||||||||||||||||||||||| ||||
Sbjct 178 CGCTAC---G-AACGAGGATACAAACTT-GATACCAGTTTTGTCCATGAGAGGAGAGATT 232
Query 236 TACAAAACAATGGAGTCTCCATCGACTTTCTGCCACCCGGA-ATGATAAAGATCGAAGCT 294
| ||||||| |||||||||||||| |||||||||| ||| | | |||||| |||||
Sbjct 233 TGGAAAACAAAGGAGTCTCCATCGATTTTCTGCCACAGGGAGA-GGGAAAGATTAAAGCT 291
Query 295 TGTGATGCAAGTCATGGGATATTGCTTTGTGTTAAGT-ATACA-AAACCATCA-CGTGGA 351
||||||||||||||||| ||||||||||||||||| | ||||| || || | || | |
Sbjct 292 TGTGATGCAAGTCATGGAATATTGCTTTGTGTTAA-TGATACAGGAATAAT-ACCG-GAA 348
Query 352 TACATAGTCTTCAAACCAACCACTAAACAGTATCAGGTCATACCAAAGCCAGAAGTGAAG 411
|||||||||| |||||||||||| |||||||||||| |||||||||| ||| ||||| |
Sbjct 349 TACATAGTCTGCAAACCAACCACAAAACAGTATCAGATCATACCAAACCCAAAAGTG-GG 407
Query 412 G-GTTGGGATATGTCATTGGGTTTAGCGGTAATCGGATTGAACCCTTTCCGGTATAAAAT 470
| | || |||| |||| | ||| || ||||| ||||||||||||||||||||||||| |
Sbjct 408 GAGATGTGATAAGTCACTCGGTATAATGGTAACCGGATTGAACCCTTTCCGGTATAAAGT 467
Query 471 ACAAAGGCTTTCGCAGTCTCGGCGTATGTGTATGTCTCGGGGTATCTACCATTTGAATCA 530
| ||||||||| || || || | | ||||| | || || ||
Sbjct 468 ATTTAGGCTTTCGAAG--TC-GC------------C-C--GGTAT-GA--ATCGGAGTCT 506
Query 531 CAGAACTTTTATGTGCGAAGTTTTCGATTCTGATTCGTTTACCTGGAAGA-GATTAGAAA 589
|||||||||| |||||||||||| ||||| |||||||||| ||||||| || || |||
Sbjct 507 CAGAACTTTTGCGTGCGAAGTTTTTGATTCCGATTCGTTTATGTGGAAGAGGA-TAAAAA 565
Query 590 ATTTGCGTCTACCAAAAACAGACAGATTAATTTTTTCCAACCCGATACAAGTTTCGGGGT 649
|| |||||||||||| ||||||| | ||||||||||| |||||| |||||| ||||||||
Sbjct 566 ATCTGCGTCTACCAAGAACAGACGGTTTAATTTTTTCAAACCCGGTACAAGCTTCGGGGT 625
Query 650 TCTTGCATTGGATATCACGGAACAACAATGTGATCCGGTTTTGTCTCAAAACCGAAACTT 709
||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 626 TCTTGAATTGGATATCACGGAACAACAACGTGATCCGGTTATGTCTCAAAACCGAAACTT 685
Query 710 GGTCCTTCTTCCATACTCCGAAC-TCTGATGTTTTCTCAGGA-TTAGTCAGATACGAAGG 767
|||| ||||| ||||| || ||| | || | | ||| || || || ||||||||||||||
Sbjct 686 GGTCTTTCTTACATACCCCAAACGT-TGGTATATTCCCA-GAGTTGGTCAGATACGAAGG 743
Query 768 GAAGCTAGGTGCTATTCGTCAGTGGACAAACAA-AGATCAAGAAGATGTTCAC-GAGTTA 825
||||||||||| ||||||||| |||| |||||| | ||||||||||||||||| || |||
Sbjct 744 GAAGCTAGGTGTTATTCGTCACTGGATAAACAACA-ATCAAGAAGATGTTCACGGA-TTA 801
Query 826 TGGGTTTTAAAGAGCAGTTTTGAAAAGTCGTGGGTTAAAGTGAAAGATATTAAAAGCATT 885
||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||
Sbjct 802 TGGGTTTTAAAGAGCAGTTTTGAGAAGTCGTGGATAAAAGTGAAAGATATTAAAAGCATT 861
Query 886 GGAGTAGATTTGATTACGTGGACTCCAAGCAACGACGTTGTATTG-TTTCGTAGTAGTGA 944
||||||||| ||| ||||||||||||||||||||| ||| || |||| |||| | ||
Sbjct 862 GGAGTAGATCACATTGTGTGGACTCCAAGCAACGACGTCGTAATGCTTTC-TAGTTGGGA 920
Query 945 TCGTGGT-TGCCTCTACAACATAAACGCAGAGAAGTTGAATTTAGTTTATGCaaaaaaaG 1003
||||| | |||||||||||||| ||| |||| |||||||| |||||| || |||| ||||
Sbjct 921 TCGTG-TCTGCCTCTACAACATTAACACAGAAAAGTTGAACTTAGTTCATACAAACAAAG 979
Query 1004 AGGGATCTGATTGT-TCTTTCGTTTGTTTTCCGTTTTGTTCTGATTACGAGAGGGTTGAT 1062
| | | ||| |||| ||||||||| |||||||||||||||||||||| | |||||
Sbjct 980 A----T-T--TTGCCTCTTACGTTTGTTTCCCGTTTTGTTCTGATTACGAGAAGATTGAT 1032
Query 1063 CTG 1065
|||
Sbjct 1033 CTG 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49026071262
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5