BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64295.1
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337954 jgi|Araly1|337954|fgenesh1_pg.C_scaffold_2000053 1452 0.0
Ahg924508 jgi|Araly1|924508|scaffold_200069.1 950 0.0
> Ahg337954 jgi|Araly1|337954|fgenesh1_pg.C_scaffold_2000053
Length=1161
Score = 1452 bits (786), Expect = 0.0
Identities = 988/1084 (91%), Gaps = 19/1084 (2%)
Strand=Plus/Plus
Query 1 ATGAGTTCTCCGGTGATAAATCAGGACACGATCCAAGAGGTTCTTTCTTATCTT-CGGGG 59
||||||||||||||| ||||||| |||| ||||||||||||||||||||| || | ||
Sbjct 1 ATGAGTTCTCCGGTGCTAAATCAAGACATAATCCAAGAGGTTCTTTCTTAT-TTCCCGGC 59
Query 60 GTCCGAAATCGGAAAATTGAGGCTCATCAATAAAGAGTGCAACAAGAGAAGCTACGAGTC 119
|| |||| |||||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 60 TTCAAAAATTGGAAAATTCAGGCTCCTGAATAAAGAGTGCAACAAGAGAAGCTACGAGTC 119
Query 120 TTGGTTTGTCAACCTAAATCTCCATCGAACCAACAATATCTCTGGATACTTCCTAGAACG 179
|||||| |||| || ||| ||||| |||||||| ||||||| |||||||||||||||||
Sbjct 120 ATGGTTTCTCAATCTCAATTTCCATAGAACCAACTATATCTCCGGATACTTCCTAGAACG 179
Query 180 CTACGAAAGAGGATACAAACTTGATACCAGTTTTTTCCATGAGAGGAGAGATTTGGATAA 239
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 180 CTACGAACGAGGATACAAACTTGATACCAGTTTTGTCCATGAGAGGAGAGATTTGGAAAA 239
Query 240 CAAAGGAGTCTCCATCGATTTTCTGCCACAAGGAGAGGTAAAGATCAAAGCTTGTGATGC 299
|||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||
Sbjct 240 CAAAGGAGTCTCCATCGATTTTCTGCCACAGGGAGAGGGAAAGATTAAAGCTTGTGATGC 299
Query 300 ACGTCATGGGATATTGCTTTGT-TATAATGATACAAGACCAATACCGGAATACATAGTCT 358
| ||||||| |||||||||||| | |||||||||| || ||||||||||||||||||||
Sbjct 300 AAGTCATGGAATATTGCTTTGTGT-TAATGATACAGGAATAATACCGGAATACATAGTCT 358
Query 359 GCAAACCAACAACAAAACAGTATCAGATCATACCAAACCCAAAAGTGAGGAGTTGTGATA 418
|||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 359 GCAAACCAACCACAAAACAGTATCAGATCATACCAAACCCAAAAGTGGGGAGATGTGATA 418
Query 419 AGTCATTAGGTCTAACGGTAACCGGATTGCAGCCTTTCCGGTATAAAATATTTAGGCTTT 478
||||| | ||| ||| ||||||||||||| | ||||||||||||||| ||||||||||||
Sbjct 419 AGTCACTCGGTATAATGGTAACCGGATTGAACCCTTTCCGGTATAAAGTATTTAGGCTTT 478
Query 479 CGAAATCGCCTGGTATGACTCGGAATCTCAGAACTTTTGCGTGCGAAGTTTTTGATTCCG 538
|||| ||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 479 CGAAGTCGCCCGGTATGAATCGGAGTCTCAGAACTTTTGCGTGCGAAGTTTTTGATTCCG 538
Query 539 ATTCGTTTATGTGGAAGA-GATTAAAAAATTTGCGTCTACCGAGAACAGACGGTCTAATT 597
|||||||||||||||||| || |||||||| |||||||||| |||||||||||| |||||
Sbjct 539 ATTCGTTTATGTGGAAGAGGA-TAAAAAATCTGCGTCTACCAAGAACAGACGGTTTAATT 597
Query 598 CTTTCAAACCCGGTACAAGCTTCAGGGTTCTTGCATTGGAGATCATGGAACCACAATGTG 657
|||||||||||||||||||||| ||||||||| |||||| |||| ||||| |||| |||
Sbjct 598 TTTTCAAACCCGGTACAAGCTTCGGGGTTCTTGAATTGGATATCACGGAACAACAACGTG 657
Query 658 ATCCGGTTATGTCCCAAAACCGAAACTTGGTCTTTCTTACATACTCCAAACGTTGGTTTA 717
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 658 ATCCGGTTATGTCTCAAAACCGAAACTTGGTCTTTCTTACATACCCCAAACGTTGGTATA 717
Query 718 TTCCCAGAGTTAGTCAGCTACGAAGGGAAGCTAGGTGTTATTCGTCACTGGATAAACAAC 777
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTCCCAGAGTTGGTCAGATACGAAGGGAAGCTAGGTGTTATTCGTCACTGGATAAACAAC 777
Query 778 AATCAAGAAGATGTTCACAGATTATGGGTTTTAAAGAGCAGTTTTGAAAAGTCGTGGGA- 836
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
Sbjct 778 AATCAAGAAGATGTTCACGGATTATGGGTTTTAAAGAGCAGTTTTGAGAAGTCGTGG-AT 836
Query 837 AAAAGTGAAAGATATTGAAAGCATTGGAGTAGAGCATATTACGTGGA-TACCAAGCAACG 895
|||||||||||||||| |||||||||||||||| || ||| ||||| | ||||||||||
Sbjct 837 AAAAGTGAAAGATATTAAAAGCATTGGAGTAGATCACATTGTGTGGACT-CCAAGCAACG 895
Query 896 ACGTCGTAATGCTTTCTAGTTGGGATCATGTTTGCCTCTACAAC-TTAAACACAGAGAAG 954
||||||||||||||||||||||||||| ||| |||||||||||| |||| |||||| |||
Sbjct 896 ACGTCGTAATGCTTTCTAGTTGGGATCGTGTCTGCCTCTACAACATTAA-CACAGAAAAG 954
Query 955 TTAAACTTAGTTCATACAAACAAGGATTTTGCCTCTTACGTTTGTTTCCCCTTTTGTTCT 1014
|| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 955 TTGAACTTAGTTCATACAAACAAAGATTTTGCCTCTTACGTTTGTTTCCCGTTTTGTTCT 1014
Query 1015 GATTACGAGAGGGTTGATCTGGA--C-GGA--A--GAAGAAATGGACCGACAAATGCAAA 1067
|||||||||| | |||||||||| | ||| | ||||||||||||| |||||||||||
Sbjct 1015 GATTACGAGAAGATTGATCTGGATTCTGGACGAAAGAAGAAATGGACCTACAAATGCAAA 1074
Query 1068 CTAG 1071
||||
Sbjct 1075 CTAG 1078
> Ahg924508 jgi|Araly1|924508|scaffold_200069.1
Length=1138
Score = 950 bits (514), Expect = 0.0
Identities = 837/986 (85%), Gaps = 49/986 (5%)
Strand=Plus/Plus
Query 109 AGCTACGAGTCTTGGTTTGTCAACCTAAATCTCCATCGAACCAACAATATCTCTGGATAC 168
||||||||||| |||||| |||| || ||||||| | ||||||| ||| || ||||||
Sbjct 101 AGCTACGAGTCATGGTTTCTCAATCTCAATCTCCGTAGAACCAATTGTATTTCGGGATAC 160
Query 169 TTCCTAGAACGCTACGAAAG-AGGATACAAACTTGATACCAGTTTTTTCCATGAGAGGAG 227
|||||| ||||||||| ||| ||| ||| || | || | ||||||||||||||| ||
Sbjct 161 TTCCTACAACGCTACG-AAGAAGGTTAC-AA----A-ACAAATTTTTTCCATGAGAGCAG 213
Query 228 AGATTTGGATAACAAAGGAGTCTCCATCGATTTTCTGCCACAAGGAGAGGTAAAGATCAA 287
||||| | ||||| |||||||||||||||||||||||||| ||| |||| |||||| |
Sbjct 214 TGATTTACAAAACAATGGAGTCTCCATCGATTTTCTGCCACACGGAAAGGTCAAGATCGA 273
Query 288 AGCTTGTGATGCACGTCATGGGATATTGCTTTGT-TATAATGATACAAGACCAATACCGG 346
||||||||||||| |||||||||||||||||||| | | || ||||| ||| ||||||||
Sbjct 274 AGCTTGTGATGCAAGTCATGGGATATTGCTTTGTGT-TGATAATACAGGACTAATACCGG 332
Query 347 AATACATAGTCTGCAAACCAACAACAAAACAGTATCAGATCATACCAAACCCAAAAGTGA 406
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 333 AATACATAGTCTGCAAACCAACCACAAAACAGTATCAGATCATACCAAACACAAAAGTGG 392
Query 407 GGAGTTGTGATAAGTCATTAGGTCTAACGGTAACCGGATTGCAGCCTTTCCGGTATAAAA 466
||| ||| ||| ||||| ||| || |||||| ||||||| | ||||||||||||||||
Sbjct 393 GGATTTGGGATGTCTCATTCGGTTTAGCGGTAATCGGATTGAACCCTTTCCGGTATAAAA 452
Query 467 TATTTAGGCTTTCGAAATCG---C--C---TG-GTATGACTC-----G-G-A--AT-C-- 505
|| | ||||||||| | ||| | | || ||||| ||| | | | || |
Sbjct 453 TACTAAGGCTTTCGCAGTCGTCTCGGCGTATGTGTATGTCTCGGGGTGTGTATTATGCGA 512
Query 506 -T--CAGAACTTTTGCGTGCGAAGTTTTTGATTCCGATTCGTTTATGTGGAAGAGATTAA 562
| |||||||||| ||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 513 ATCACAGAACTTTTACGTGCGAAGTTTTCGATTCCGATTCGTTTACCTGGAAGAGATTAG 572
Query 563 AAAATTTGCGTCTACCGAGAACAGACGGTCTAATTCTTTCAAACCCGGTACAAGCTTC-A 621
||||||||||| |||| |||||||||||| |||||||||| ||||||||||||||||
Sbjct 573 AAAATTTGCGTATACCAAGAACAGACGGTTTAATTCTTTCCCACCCGGTACAAGCTTCGG 632
Query 622 GG--GTTCTTGCATTGGAGATCATGGAACCACAATGTGATCCGGTTATGTCCCAAAACCG 679
|| ||||||||||||||||||| ||||| |||||||||||||||| |||| ||||||||
Sbjct 633 GGTTGTTCTTGCATTGGAGATCACGGAACAACAATGTGATCCGGTTCTGTCTCAAAACCG 692
Query 680 AAACTTGGTCTTTCTTACATACTCCAAACGTTGGT-TTATTCCCA-GAGTTAGTCAGCTA 737
|||||||||||||||| |||||||| ||| ||||| || ||| || || |||||||| ||
Sbjct 693 AAACTTGGTCTTTCTTCCATACTCCGAACTTTGGTGTT-TTCTCAGGA-TTAGTCAGATA 750
Query 738 CGAAGGGAAGCTAGGTGTTATTCGTCACTGGATAAACAACA-ATCAAGAAGATGTTCACA 796
||||||||||||||||| |||| |||| |||| |||||| | |||||||| ||||||||
Sbjct 751 CGAAGGGAAGCTAGGTGCTATTTGTCAGTGGACAAACAA-AGATCAAGAAAATGTTCACG 809
Query 797 GATTATGGGTTTTAAAGAGCAGTTTTGAAAAGTCGTGGGAAAAAGTGAAAGATATTGAAA 856
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 810 GATTATGGGTTTTAACGAGCAGTTTTGAAAAGTCGTGGGAAAAAGTGAAAGATATTAAAA 869
Query 857 GCATTGGAGTAGAGCAT-ATTACGTGGA-TACCAAGCAACGACGTCGTAATGCTTTCTAG 914
||||||||| ||| | |||||||||| | | | | ||||||||||| || ||| ||
Sbjct 870 GCATTGGAGAAGATT-TCATTACGTGGACT-CTAGGAAACGACGTCGTGTTGTTTTGTAA 927
Query 915 TTGGGATCATGTTTGCCTCTACAACTTAAACACAGAGAAGTT-AAACTTAGTTCATACAA 973
|||||||| | |||||||||||||| |||||||||||||||| ||| |||||||||||||
Sbjct 928 TTGGGATCGTTTTTGCCTCTACAACATAAACACAGAGAAGTTGAAA-TTAGTTCATACAA 986
Query 974 ACAAGGATTTTGCCTCTTACGTTTGTTTCCCCTTTTGTTCTGATTACGAGAGGGTTGATC 1033
|||||| ||||||||||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct 987 ACAAGGGCTTTGCCTCTTACGTTTGCTTCCCGTTTTGTTCTGATTACGAGAAGGTTGATA 1046
Query 1034 TGGACGGAAGAAGAAATGGACCGACA 1059
||||| |||||||||||| ||||||
Sbjct 1047 GGGACGAAAGAAGAAATGGGCCGACA 1072
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39876571182
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5