BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64300.1
Length=2696
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474922 jgi|Araly1|474922|fgenesh2_kg.2__52__AT1G64300.2 3744 0.0
Ahg493812 jgi|Araly1|493812|fgenesh2_kg.7__3245__AT5G41730.1 1989 0.0
> Ahg474922 jgi|Araly1|474922|fgenesh2_kg.2__52__AT1G64300.2
Length=2609
Score = 3744 bits (2027), Expect = 0.0
Identities = 2314/2448 (95%), Gaps = 37/2448 (2%)
Strand=Plus/Plus
Query 1 GAGACAGCGAAAACCTGTGGGGAAAAAATTTTAGAAGCAACCCAAAAGAGAAGAGAAGAA 60
|||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||
Sbjct 20 GAGACAGCGAAAACCTTTGGGAAAAAAAATTTAGAAGCAACCCAAAAGAGAAGAGAAGAA 79
Query 61 ATTTATTTCTT-TT-TCTCCctctctctctctTTTGAAGCTTCTTCTGATTCAAAGTTTT 118
| || ||||| || || | |||||||||||||||||||||||||||||||||||||
Sbjct 80 A-TT-CTTCTTCTTAGCTTTTTTTCTCTCTCTTTTGAAGCTTCTTCTGATTCAAAGTTTT 137
Query 119 ACAGTCAGGTTGGAGAAGATTGTTGATGTTTTGGTTTGATTCGATTAGTCAATCCTATGA 178
| |||||||||||||||||||||| |||| | | || || | | | |||||
Sbjct 138 --A--CAGGTTGGAGAAGATTGTTGATCTTTT-G---G-TT-GA--A--C---CATATGA 180
Query 179 TTTCATATATTCCAAGAGAATTCATAAATCCTTGAACCAAAATAAGGATCTTCATTTCAG 238
||||||||||||||||||||||||| |||||||||| |||| || ||||||||||||||
Sbjct 181 TTTCATATATTCCAAGAGAATTCATCGATCCTTGAACAAAAAAAAAGATCTTCATTTCAG 240
Query 239 CTTTCTAGAGA-AATTG---AGAAAGCCTGTGATATGTGATGGAGCAATTCAGGCAAATC 294
||| | || | | ||| || |||||||| | ||||||||||||||||||||||||||
Sbjct 241 GTTT-TTGA-ATACTTGACAAGCAAGCCTGT-A-ATGTGATGGAGCAATTCAGGCAAATC 296
Query 295 GGAGAGGTTCTAGGAAGCTTAAACGCGTTAATGGTATTACAAGACGATATCTTAATCAAC 354
||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 297 GGAGAGGTTCTTGGAAGTTTAAACGCGCTAATGGTATTACAAGACGATATCTTAATCAAC 356
Query 355 CAAAGACAATGTTGTTTGTTGTTAGATATTTTCAGTTTGGGTTTCAACACCGTAGCCGAA 414
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 357 CAAAGACAATGTTGTTTGTTGTTAGATATTTTCAGTTTGGCTTTCAACACCGTAGCCGAA 416
Query 415 GAGATCAGACACAACTTGAAGCTTGAAGAGAAGCATACTAAATGGAGAGCTCTTGAACAG 474
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GAGATCAGACACCACTTGAAGCTTGAAGAGAAGCATACTAAATGGAGAGCTCTTGAACAG 476
Query 475 CCTTTGAGAGAGCTTTATCGAGTTTTTAAAGAAGGCGAAATGTATGTTCGGAATTGTATG 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CCTTTGAGAGAGCTTTATCGAGTTTTTAAAGAAGGCGAAATGTATGTTCGGAATTGTATG 536
Query 535 TCTAATAAAGATTGGTGGGGTAAAGTTATCAACTTTCATCAGAACAAAGATTGTGTTGAG 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TCTAATAAAGATTGGTGGGGTAAAGTTATCAACTTTCATCAGAACAAAGATTGTGTTGAG 596
Query 595 TTTCATATACATAATCTGCTTTGTTACTTTTCGGCTGTGATCGAAGCCATCGAGACCGCG 654
||||| || || ||| ||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 597 TTTCACATTCACAATTTGCTTTGTTACTTCTCGGCTGTGATCGAAGCCATCGAGACAGCG 656
Query 655 GGTGAGATTTCGGGTCTTGACCCTTCTGAGATGGAGAGGAGGAGAGTTGTGTTTTCAAGA 714
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 657 GGTGAGATTTCGGGTCTCGACCCTGCTGAGATGGAGAGGAGGAGAGTTGTGTTTTCAAGA 716
Query 715 AAGTATGATAGGGAGTGGAATGATCCCAAGCTGTTTCAGTGGAGGTTTGGGAAACAGTAT 774
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 717 AAGTATGATAGGGAGTGGAATGATCCCAAGCTGTTTCAGTGGAGGTATGGGAAACAGTAT 776
Query 775 TTGGTACCGAGGGATATTTGC-TTACGGTTCGAGCATTCGTGGAGAGAAGATAGGTGGAA 833
||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 777 TTGGTACCGAGGGATATTTGCATT-CGGTTCGAGCATTCTTGGAGAGAAGATAGGTGGAA 835
Query 834 TCTCGTTGAGGCATTGCAAGAGAAGAGGAAGTCCAAGAGCGATGAGATTGGCAAGACTGA 893
||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 836 TCTAGTGGAGGCATTGCAAGAGAAGAGGAAGTCCAAGAGCGATGAGATTGGGAAGACTGA 895
Query 894 GAAGCGTTTAGCTGATTTTCTGTTGAAGAAACTAACGGGACTAGAACAGTTTAATGGTAA 953
|||||||||||||||||||||||||||||||||||| ||| | ||||||||||| |||||
Sbjct 896 GAAGCGTTTAGCTGATTTTCTGTTGAAGAAACTAACTGGATTGGAACAGTTTAACGGTAA 955
Query 954 GCTCTTCCCCAGTTCGATACTTGTTGGTTCTAAGGATTACCAAGTGAGGAGGAGATTAGG 1013
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 956 GCTCTTCCCGAGTTCGATACTTGTTGGTTCTAAGGATTACCAAGTGAGGCGGAGATTAGG 1015
Query 1014 TGGTGGTGGTCAGTACAAGGAGATTCAATGGTTAGGGGATAGTTTTGTGTTGAGACATTT 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TGGTGGTGGTCAGTACAAGGAGATTCAATGGTTAGGGGATAGTTTTGTGTTGAGACATTT 1075
Query 1074 TTTCGGTGATCTTGAGCCGTTGAATGCAGAGATTTCTTCTCTGTTATCGCTTTGTCATTC 1133
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TTTCGGGGATCTTGAGCCGTTGAATGCAGAGATTTCTTCTCTGTTATCGCTTTGTCATTC 1135
Query 1134 GAATATACTTCAGTACCTTTGTGGATTCTATGATGAAGAAAGGAAAGAATGTTCTCTTGT 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1136 GAATATACTTCAGTACCTTTGTGGATTCTATGATGAAGAAAGGAAAGAATGTTCTCTGGT 1195
Query 1194 TATGGAGTTAATGCACAAAGATTTGAAAAGCTACATGAAGGAGAATTGTGGACCTAGAAG 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TATGGAGTTAATGCACAAAGATTTGAAAAGCTACATGAAGGAGAATTGTGGACCTAGAAG 1255
Query 1254 AAGATATCTTTTCTCTGTTCCCGTTGTTATCGATATAATGCTTCAAATCGCGAGAGGGAT 1313
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1256 AAGGTATCTTTTCTCTGTTCCCGTTGTGATCGATATAATGCTTCAAATCGCGAGAGGGAT 1315
Query 1314 GGAGTATCTTCATTCAAATGAGATTTTCCATGGAGATTTGAATCCAATGAACATTCTTTT 1373
||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1316 GGAATATCTTCATTCTAATGAGATTTTCCATGGAGATTTGAATCCCATGAACATTCTTTT 1375
Query 1374 GAAAGAGAGAAGTCACACCGAAGGTTACTTCCACGCGAAAATCTCGGGTTTCGGTTTAAC 1433
||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct 1376 GAAAGAGAGAAGTCACACCGAAGGTTATTTCCACGCGAAAATCTCAGGTTTCGGCTTGAC 1435
Query 1434 CTCAGTTAAGAATCAGTCTTTTTCTCGGGCTTCCTCTAGACCAACCACACCTGATCCTGT 1493
||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1436 CTCAGTTAAAAATCAGTCATTTTCTCGGGCTTCCTCTAGACCAACCACACCCGATCCTGT 1495
Query 1494 AATATGGTATGCACCTGAAGTTCTAGCAGAGATGGAACAAGATCTCAAAGGTACAGCTCC 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1496 AATATGGTATGCACCTGAAGTTCTAGCAGAGATGGAACAAGATCTCAAAGGTACAACTCC 1555
Query 1554 AAGATCAAAGTTTACACATAAAGCTGATGTCTATAGCTTTGCTATGGTGTGTTTTGAGCT 1613
||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1556 GAGATCGAAGTTTACACATAAAGCTGATGTTTATAGCTTTGCTATGGTGTGTTTCGAGCT 1615
Query 1614 TATAACCGGTAAAGTTCCATTTGAAGATGACCATCTTCAAGGCGATAAAATGGCTAAGAA 1673
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1616 TATAACCGGTAAAGTTCCATTTGAAGATGACCATCTTCAAGGCGAGAAAATGGCTAAGAA 1675
Query 1674 CATAAGAACGGGAGAGAGACCTCTCTTCCCATTCCCTTCACCAAAATACCTTGTTAGTCT 1733
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1676 CATAAGAACGGGAGAGAGACCTCTCTTCCCATTCCCTTCGCCAAAATACCTCGTTAGTCT 1735
Query 1734 AATCAAACGGTGTTGGCATTCAGAACCGAGTCAGCGTCCAACATTCTCTTCGATTTGCCG 1793
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1736 AATTAAACGGTGTTGGCATTCAGAACCGAGTCAGCGTCCAACATTCTCTTCGATATGCCG 1795
Query 1794 GATCCTCCGCTACATCAAGAAGTTCCTAGTGGTGAATCCGGACCACGGTCACCTTCAAAT 1853
||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| |||||
Sbjct 1796 GATCCTCCGCTACATCAAGAAATTCCTAGTTGTGAATCCGGATCACGGCCACCTCCAAAT 1855
Query 1854 CCAAAACCCTCTAGTTGATTGCTGGGATTTAGAAGCAAGATTCTTGAAAAAGTTCTCAAT 1913
||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1856 CCAAAACCCACTTGTTGATTGCTGGGACTTAGAAGCAAGATTCTTGAAAAAGTTCTCAAT 1915
Query 1914 GGAGTCAGGTTCTCACGCAGGATCAGTGACACAAATACCATTCCAGCTTTACTCATACAG 1973
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1916 GGAGTCAGGTTCTCACGCAGGATCCGTGACACAAATACCATTCCAGCTCTACTCATACAG 1975
Query 1974 GATTGCAGAGAAAGAGAAGATGAGTCCAAACTTTAACAAAGAAGAGAATTCAGATGCAGG 2033
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1976 GATTGCAGAGAAAGAGAAGATGAGTCCAAACTTTAACAAAGAAGAGAATTCAGAAACAGG 2035
Query 2034 GGAATCTGTTTCTGAAAGTGTTTCAGTAGTTGAAGAGCCACCAACAACAATGCCAATGTA 2093
|||||||||||||||| |||||||||| |||||||| |||||||||| ||||||||||
Sbjct 2036 GGAATCTGTTTCTGAAGGTGTTTCAGTGGTTGAAGATCCACCAACAA---TGCCAATGTA 2092
Query 2094 TACTAAGTCATTATGCTTAGATGCAATATCTGAATACTCAGATACAAGATCAGTCTACTC 2153
||| |||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 2093 TACAAAGTCATTGTGCTTAGATGCAATATCTGAATACTCAGATATAAGATCAGTTTACTC 2152
Query 2154 AGAAGCTCCAATCAAAAAGACATCAGCTTTAAAGAAAAGTGGTGACACCATCAAAAACAG 2213
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2153 AGAAGCTCCAATCAAAAAGACATCAGCTTTAAAGAAAAGTGGTGACACCATAAAAAACAG 2212
Query 2214 AAGAAATTCAATCTCAGGTTTAAGGTCTCCAGGATCATCGCCTATAAAACCGAGATCAAC 2273
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2213 AAGAAACTCAATCTCAGGTTTACGGTCTCCAGGATCATCGCCTATAAAACCGAGATCAAC 2272
Query 2274 ACCTAAAGTATCATCACCACTAAGTCCATTTGGAAGAAGCAGCAGCAACAAAGCAAACAA 2333
||| ||||| |||||||||||||||||||||||||||||||||||||| | |||| ||
Sbjct 2273 ACCGAAAGTGTCATCACCACTAAGTCCATTTGGAAGAAGCAGCAGCAA-A--GCAAGGAA 2329
Query 2334 GGATACAAGATTGCCTTTGAGTCCTATGAGTCCACTGAGCCATGGAAGACGTAGACAACT 2393
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2330 GGATACAAGATTGCCTTTGAGTCCTATGAGTCCTTTGAGCCATGGAAGACGTAGACAACT 2389
Query 2394 AACTGGTCCTGCTTCAGACTCTGAGCTTACATAGCTTTGAAACACACA 2441
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2390 CACTGGTCCTGCTTCAGACTCTGAGCTTACATAGCTTTGAAACACACA 2437
> Ahg493812 jgi|Araly1|493812|fgenesh2_kg.7__3245__AT5G41730.1
Length=2148
Score = 1989 bits (1077), Expect = 0.0
Identities = 1850/2208 (84%), Gaps = 114/2208 (5%)
Strand=Plus/Plus
Query 274 ATGGAGCAATTCAGGCAAATCGGAGAGGTTCTAGGAAG-CTTAAACGCGTTAATGGTATT 332
|||||||||||||| |||||||| || ||||| ||||| ||| || || ||||||||||
Sbjct 1 ATGGAGCAATTCAGACAAATCGGCGAAGTTCTTGGAAGTCTT-AATGCACTAATGGTATT 59
Query 333 ACAAGACGATATCTTAATCAACCAAAGACAATGTTGTTTGTTGTTAGATA-TTTTCAGTT 391
|||||| |||||||| |||||||||||||||||||||||||||||||| | | |||||||
Sbjct 60 ACAAGATGATATCTTGATCAACCAAAGACAATGTTGTTTGTTGTTAGA-ACTCTTCAGTT 118
Query 392 TGGGTTTCAACACCGTAGCCGAAGAGATCAGACACAACT-TGAAGCTTGAAGAGAAGCAT 450
| | ||||||||| || || |||||||||||||| || | | ||||||||||||||||||
Sbjct 119 TAGCTTTCAACACGGTCGCAGAAGAGATCAGACAGAA-TCTAAAGCTTGAAGAGAAGCAT 177
Query 451 ACTAAATGGAGAGCTCTTGAACAGCCTTTGAGAGAGCTTTATCGAGTTTTTAAAGAAGGC 510
||||||||||||||||||||||| ||||| || ||||||||| |||| |||||||||||
Sbjct 178 ACTAAATGGAGAGCTCTTGAACAACCTTTAAGGGAGCTTTATAGAGTGTTTAAAGAAGGA 237
Query 511 GAAATGTATGTTCGGAATTGTAT-GTCTAATAAAGATTGGTGGGGTAAAGTTATCAACT- 568
|| | |||||| | ||||||| | | |||| ||||||||||||||||||||||| |
Sbjct 238 GAGTTATATGTTAAGCATTGTATGGAC-AATAGTGATTGGTGGGGTAAAGTTATCAA-TC 295
Query 569 TTCATCAGAACAAAGATTGTGTTGAGTTTCATATACATAATC-TGCTT-TGTTACTTT-T 625
|||||||||| |||||||||||||||||||||||||| || | || || ||||| ||| |
Sbjct 296 TTCATCAGAATAAAGATTGTGTTGAGTTTCATATACACAA-CTTG-TTCTGTTA-TTTCT 352
Query 626 CGGCTG-TGATCGAAGCCATCGAGACCGCGGGTGAGATTTCGGGTCTTGACCCTTCTGAG 684
| || | || | ||||| |||||| | || |||||||||||||||||||||||||| |||
Sbjct 353 CTGCGGTTG-TTGAAGCGATCGAGGCTGCTGGTGAGATTTCGGGTCTTGACCCTTCGGAG 411
Query 685 ATGGAGAGGAGGAGAGTTGTGTTTTCAAGAAAGTATGATAGGGAGTGGAATGATCCCAAG 744
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 412 ATGGAGAGAAGGAGAGTTGTGTTTTCAAGAAAGTATGATAGAGAGTGGAATGATCCTAAG 471
Query 745 CTGTTTCAGTGGAGGTTTGGGAAACAGTATTTGGTACCGAGGGATATTTGC-TTACGGTT 803
|||||||| ||||||||||||||||||||||||||| || ||||||||||| || |||||
Sbjct 472 CTGTTTCAATGGAGGTTTGGGAAACAGTATTTGGTATCGCGGGATATTTGCATT-CGGTT 530
Query 804 CGAGCATTCGTGGAGAGAAGATAGGTGGAATCTCGTTGAGGCATTGCAAGAGAAGAGGAA 863
||||||||| ||||||||||||||||||||||| || |||||||| ||||| ||| ||||
Sbjct 531 CGAGCATTCTTGGAGAGAAGATAGGTGGAATCTAGTGGAGGCATTACAAGAAAAGCGGAA 590
Query 864 GTCCAAGAGCGATGAGATTGGCAAGACTGAGAAGCGTTTAGCTGATTTTCTGTTGAAGAA 923
|| | |||||||| ||||| || || |||||||||||||| ||||| |||||||||||
Sbjct 591 ATCGGATAGCGATGATATTGGTAAAACCGAGAAGCGTTTAGCGGATTTGCTGTTGAAGAA 650
Query 924 ACTAACGGGACTAGAACAGTTTAATGGTAAGCTCTTCCCCAGTTCGATACTTGTTGGTTC 983
|||| || | || |||||||| ||||| || || || |||||||||||| |||||||
Sbjct 651 GTTAACCGGTTTGGAGCAGTTTAACGGTAAACTGTTTCCGAGTTCGATACTTCTTGGTTC 710
Query 984 TAAGGATTACCAAGTGAGGAGGA-GATTAGGTGGTGG-TGGTCAGTACAAGGAGATTCAA 1041
|||||||||| |||| | || | |||| | | || ||| || |||||||||||||||
Sbjct 711 AAAGGATTACCTGGTGA-AAAGACGGTTAGAT-GCGGATGGACAATACAAGGAGATTCAA 768
Query 1042 TGGTTAGGGGATAGTTTTGTGTTGAGACATTTTTTCGGTGATCTTGAGCCGTTGAA-TGC 1100
|||||||| ||||| |||| | |||| || |||||| | |||||||||||| | || | |
Sbjct 769 TGGTTAGGTGATAGCTTTGCGGTGAGGCACTTTTTCAGCGATCTTGAGCCGCT-AAGTTC 827
Query 1101 AGAGATTTCTTCTCTGTTATCGCTTTGTCATTCGAATATACTTCAGTACCTTTGTGGATT 1160
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 TGAAATTTCTTCTCTGTTATCGCTTTGTCATTCGAATATACTTCAGTACCTTTGTGGATT 887
Query 1161 CTATGATGAAGAAAGGAAAGAATG-TTCTCTTG-TTATGGAGTTAATGCACAAAGATTTG 1218
|||||||||||||||||||||||| || | ||| ||||||||||||||||||||||||||
Sbjct 888 CTATGATGAAGAAAGGAAAGAATGCTT-T-TTGGTTATGGAGTTAATGCACAAAGATTTG 945
Query 1219 AAAAGCTACATGAAGGAGAATTGTGGACCTAGAAGAAGATATCTTTTCTCTG-TTCCCGT 1277
| |||||||||||||||||||||||||| |||||||||||||| ||||| | |||||||
Sbjct 946 CAGAGCTACATGAAGGAGAATTGTGGACCAAGAAGAAGATATCTGTTCTC-GATTCCCGT 1004
Query 1278 TGTTATCGATATAATGCTTCAAATCGCGAGAGGGA-TGGAGTATCTTCATTCAAATGAGA 1336
|| |||||||| ||||| ||||| || || |||| |||| ||||||||| |||||| |
Sbjct 1005 CGTGATCGATATCATGCTGCAAATTGCAAG-GGGAATGGAATATCTTCATGGAAATGATA 1063
Query 1337 TTTTCCATGGAGATTTGAATCCAATGAACATTCTTTTGAAAGAGAGAAGTCACACCGAAG 1396
| |||||||||||||| || || |||||||||| |||||||||||| |||||||||||||
Sbjct 1064 TCTTCCATGGAGATTTAAACCCCATGAACATTCATTTGAAAGAGAGGAGTCACACCGAAG 1123
Query 1397 GTTACTTCCACGCGAAAATCTCGGGTTTCGGTTTAACCTCAGT--TAAGAATC--AGTCT 1452
|||| |||||||||||||| ||||| |||||||| | ||||| | | || | |||||
Sbjct 1124 GTTATTTCCACGCGAAAATATCGGGATTCGGTTTGTCTTCAGTCGTTA-AAGCGCAGTCT 1182
Query 1453 TTTTCTCGGGCTTCCTCTAGACCAACCACACCTGATCCTGTAATATGGTATGCACCTGAA 1512
| ||||| ||||||| | |||| ||| |||||||||||||| |||||||||||||||
Sbjct 1183 T---CTCGGTCTTCCTCGAAACCAGGCACTCCTGATCCTGTAATCTGGTATGCACCTGAA 1239
Query 1513 GTTCTAGCAGAGATGGAACAAGATCTCAAAGGTACAGCTCC-AAGATCAAAGTTTACACA 1571
||||||||||||||||||||||| || || |||| | |||| || ||||||||| || ||
Sbjct 1240 GTTCTAGCAGAGATGGAACAAGACCTGAATGGTAAAACTCCGAA-ATCAAAGTTGACGCA 1298
Query 1572 TAAAGCTGATGTCTATAGCTTTGCTATGGTGTGTTTTGAGCTTATAACCGGTAAAGTTCC 1631
|||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1299 TAAAGCTGATGTGTATAGCTTTGCAATGGTGTGTTTTGAGCTTATAACAGGTAAAGTTCC 1358
Query 1632 ATTTGAAGAT-GACCATCTTCAAGGCGATAA-AATGGCTAAGAACATAAGAACGGGAGAG 1689
|||||||||| | | |||||||||| || | |||||||| ||||| |||| |||||||
Sbjct 1359 ATTTGAAGATAGTC-ATCTTCAAGGTGA-ACCAATGGCTATCAACATTAGAATGGGAGAG 1416
Query 1690 AGACCTCTCTTCCCATTCCCTTCACCAAAATACCTTGTTAGTCTAATCAAACGGTGTTGG 1749
|||||||| ||||| |||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 1417 AGACCTCTTTTCCCTTTCCCTTCACCAAAATACCTCGTTAGTCTGATTAAACGGTGTTGG 1476
Query 1750 CATTCAGAACCGAGTCAGCGTCC-AACATTCTCTTCGATTTGCCGGATCCTCCGCTACAT 1808
|| |||||||||||||||||||| ||| ||||||||||| || ||||| || ||||||||
Sbjct 1477 CACTCAGAACCGAGTCAGCGTCCTAAC-TTCTCTTCGATATGTCGGATACTTCGCTACAT 1535
Query 1809 CAAGAAGTTCCTAGTGGTGAATCCGGACCACGGTCA-CCTTCAAATCCAAAAC-CC-TCT 1865
||||||||||||||| |||||||| || || ||||| ||| ||||| |||| | || | |
Sbjct 1536 CAAGAAGTTCCTAGTTGTGAATCCAGATCATGGTCATCCT-CAAATGCAAA-CTCCAT-T 1592
Query 1866 AGTTGATTGCTGGGATTTAGAAGCAAGATTCTTGAAAAAGTTCTCAATGGAG-T-CAGGT 1923
||||||||| ||||| ||||||||||| ||||||| |||||| || | |||| | ||||
Sbjct 1593 AGTTGATTGTTGGGACTTAGAAGCAAGGTTCTTGAGAAAGTT-TCCA-GGAGATGCAGGG 1650
Query 1924 TCTCACGCAG-GATCAGTGACA-CAAATACCATTCCAGCTTTACTCATACAGGATTGCAG 1981
|||||| | | | || |||| | ||||| || ||||| || ||||||||| || || | |
Sbjct 1651 TCTCACACCGCG-TCCGTGA-ATCAAATCCCGTTCCAACTATACTCATACCGGGTTTCGG 1708
Query 1982 AGAA-AGAGAAGATGAGTCCAAACTTTAACAAAGAAGAGAATTCAGATGCAGGGGAATCT 2040
| || ||||||||||| |||||||| || || ||| || | |||| ||| | || ||
Sbjct 1709 A-AAGAGAGAAGATGAATCCAAACTC-AA-AA-GAA-AGC-T-CAGAAGCAAGTGA-TCA 1760
Query 2041 GTTTCTGAAAGTGTTTCAGTAGTTGAAGAGCCACC-AACAACA--AT-GCCA-ATGTATA 2095
| ||||||| |||||||| |||||||| ||||| || || || || | | | |||
Sbjct 1761 AT--CTGAAAGCGTTTCAGTGGTTGAAGATCCACCTAATGCCATTATTGCAAGA-G-ATA 1816
Query 2096 CTAAGTCATTATG-CTTAGATGCAATATCTGAATACTCAGATACAAGATCAGTCTACTCA 2154
| || ||||| || || |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1817 CAAAATCATTGTGTCT-AGATACAATATCTGAATACTCAGATACAAGATCAGTCTACTCA 1875
Query 2155 GAAGCTCCAATCAAAAAGA-CATCAGCTTTAAAGAAAAGTGGTGACACCATCAAAAA-CA 2212
|||||||| ||||||||| | ||||||||||||||||| || || | |||| ||
Sbjct 1876 GAAGCTCCCATCAAAAAGGTC-TCAGCTTTAAAGAAAAGCGGCGAAATGG-CAAAGCTCA 1933
Query 2213 GAAGAAATTCAATCTCAGGTTTA-AG--GTC----TC--CAGGATCATCGCCTATAAAAC 2263
|||||| | ||| || ||||| | | || || ||||| | || || |||||
Sbjct 1934 GAAGAAGTCCAAGCTTAGGTTCAGAAAAGTTGAGATCAACAGGAACTTCACCGGTAAAAG 1993
Query 2264 CGAGATCAACACCTAAAGTATCATCACCACTAAGTCCATTTGGAAGAAGCAGCAGCAA-C 2322
| |||||| | || ||||||||| || | ||||||||||||||||| | | || |
Sbjct 1994 CAAGATCATCGCCAAAAGTATCAGCAT---TGAGTCCATTTGGAAGAAGTATTA--AAGC 2048
Query 2323 AAAGCAAACA-AGGATACAAGATTGCCTTTGAGTCCTATGAGTCCACTGAGCC-ATGGAA 2380
|| | ||| | | || | |||||||||||||||| |||||||| | |||| | ||||
Sbjct 2049 AAGG-AAAGATA--AT-C--GATTGCCTTTGAGTCCAATGAGTCCTTTAAGCCCA-GGAA 2101
Query 2381 GACGTAGACAAC-TAACTGGTCCTGCTTCAGACTCTGAGCTTACATAG 2427
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Sbjct 2102 TACGTAGACAACATA-CTGGTCATGCTTCAGACTCTGAGCTTACTTAG 2148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101700954150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5