BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64310.1
Length=1659
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924505 jgi|Araly1|924505|scaffold_200066.1 2638 0.0
Ahg490847 jgi|Araly1|490847|fgenesh2_kg.7__280__AT1G64310.1 1046 0.0
> Ahg924505 jgi|Araly1|924505|scaffold_200066.1
Length=1700
Score = 2638 bits (1428), Expect = 0.0
Identities = 1585/1662 (95%), Gaps = 6/1662 (0%)
Strand=Plus/Plus
Query 1 ATGGCCTCGCAGACGCAGTTACGTTTGATTATCTATGAGTTCACGAGGAAAATTCAAACG 60
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 21 ATGGCCTCGCAGACGCAGTTACGTTTGATTATCTATGAGTTCTCGAGGAAATTTCAAACG 80
Query 61 AGATTGAATACCCAGAAGCTGCATAGCTTTGTTACCAAGTCCAAACTCGCGCGCGACCCA 120
||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 81 AGATTGAGTACCCAGAAACTGCATAGCTTTGTTACCAAGTCCAAACTCGCGCGTGACCCG 140
Query 121 TATTTCGCGACGCAACTTGCCAGATTCTATGCGTTAAACGATGATCTTATATCTGCTCGC 180
||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||
Sbjct 141 TATTTCGCGACGCAACTTGTTAGATTCTATGCGTTAAACGATGATCTCGTGTCTGCTCGC 200
Query 181 AAACTGTTCGACGTATTTCCTGAGAGAAGTGTTTTCCTTTGGAACTCTATTATTCGAGCT 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 201 AAACTGTTCGACGTATTTCCTGAGAGAAGTGTTTTCCTCTGGAACTCTATTATTCGAGCT 260
Query 241 TATGCTAAAGCTCATCAATTTACTACTGT-TTTGTCACTCTTCTCTCAAATACTGCGTTC 299
|||||||||||| ||||||||| |||| | |||||||||||||||||| || ||| ||||
Sbjct 261 TATGCTAAAGCTTATCAATTTAGTACT-TCTTTGTCACTCTTCTCTCAGATGCTGAGTTC 319
Query 300 TGATACAAGACCTGATAACTTCACCTATGCGTGCTTAGCTCGTGGCTTTTCAGAGAGTTT 359
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 320 TGATACGAGACCTGATAACTTCACCTATGCGTGTTTAGCTCGTGGCTTTTCAGAGAGTTT 379
Query 360 TGATACAAAGGGACTGAGATGTATTCATGGGATTGCAATTGTGTCTGGTCTTGGTTTTGA 419
|||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 380 CGATACAGAGGGACTGAGACGTGTTCATGGGATTGCAATTATGTCTGGTCTTGGTTTTGA 439
Query 420 TCAAATTTGTGGCAGTGCAATTGTTAAAGCTTATTCAAAAGCTGGACTTATCGTTGAAGC 479
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 440 TCAAATTTGTGGCAGTGCAATTGTTAAAGCTTATTCAAAAGCTGGCCTTATTGTTGAAGC 499
Query 480 AAGTAAGTTGTTTTGTTCAATACCAGATCCAGATCTTGCTCTTTGGAATGTTATGATTCT 539
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 500 AAGTAAGTTGTTTTGTTCAATACCAGATCCAGATCTTGCTCTGTGGAATGTTATGATTCT 559
Query 540 TGGATATGGATGCTGTGGATTTTGGGATAAAGGAATCAATTTGTTTAACTTGATGCAACA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 TGGATATGGATGCTGTGGATTTTGGGATAAAGGAATCAATTTGTTTAACTTGATGCAACA 619
Query 600 TCGAGGACACCAACCTAATTGTTATACAATGGTAGCCCTAACAAGTGGTTTGATTGATCC 659
||||||||| | ||| |||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 620 TCGAGGACATCTACCGAATTGTTATACAATGGTAGCGCTAACAATTGGTTTGATTGATCC 679
Query 660 TAGTTTGTTACTCGTTGCTTGGTCTGTTCATGCATTTTGCTTGAAAATCAATTTAGATTC 719
||||||||||||| |||||||||||||||||| |||||| |||||||||||| |||||||
Sbjct 680 TAGTTTGTTACTCATTGCTTGGTCTGTTCATGGATTTTGTTTGAAAATCAATCTAGATTC 739
Query 720 TCATTCTTATGTTGGTTGTGCTTTAGTGAACATGTACTCGAGATGCAT-GTGCATTGCTT 778
||||||||||||||||||||||||||| |||||||||||||||||| | |||||| | ||
Sbjct 740 TCATTCTTATGTTGGTTGTGCTTTAGTTAACATGTACTCGAGATGC-TGGTGCATAGTTT 798
Query 779 CTGCTTGTAGTGTGTTTAATAGCATCTCTGAGCCTGATTTAGTTGCGTGTTCTTCTTTGA 838
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 799 CTGCTTGTAGTGTGTATAATAGCATCTGTGAGCCTGATTTAGTTGCGTGTTCTTCTTTGA 858
Query 839 TAACTGGTTATTCGAGATGCGGGAATCACAAGGAGGCTTTGCATCTGTTTGCTGAGCTGA 898
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 859 TAACTGGTTATTCGAGATGCGGGAATCACAAGGAGGCTTTGCATATGTTTGCTGAGCTGA 918
Query 899 GAATGAGTGGTAAGAAGCCAGATTGTGTTCTTGTGGCGATTGTATTGGGGTCTTGTGCTG 958
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 919 GAATGAGTGGTAAGAAGCCAGATTGTGTTCTTGTGGCGATTGTATTAGGGTCTTGTGCTG 978
Query 959 AGTTATCGGATTCAGTCT-CCGGAAAAGAAGTGCACAGTTATGTTATTCGACTAGGACTA 1017
|||||||| ||||||||| | |||||| |||||||| |||||||||||||||||||||||
Sbjct 979 AGTTATCGAATTCAGTCTACGGGAAAA-AAGTGCACGGTTATGTTATTCGACTAGGACTA 1037
Query 1018 GAACTTGATATAAAGGTTTGCTCTGCTCTTATAGACATGTACTCAAAATGTGGGCTTCTA 1077
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1038 GAACTTGATATAAAGGTGTGCTCTGGTCTTATAGACATGTACTCAAAATGTGGGCTTCTG 1097
Query 1078 AAATGCGCGATGAGTCTTTTCGCAGGAATTCCAGAGAAAAACATTGTTTCTTTCAACTCC 1137
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 GATTGCGCGATGAGTCTTTTCGCAGGAATTCCAGAGAAAAACATTGTTTCTTTCAACTCC 1157
Query 1138 CTTATTTTGGGTCTTGGCTTGCACGGTTTTGCTTCCACTGCGTTTGAAAAGTTCACTGAG 1197
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1158 CTTATTTTGGGTCTTGGCTTGCACGGTTTTGCTTCCTCTGCGTTTGAAAAGTTCACTGAG 1217
Query 1198 ATCCTTGAGATGGGATTGATACCGGACGAGATCACTTTCTCTGCTCTTCTTTGTACTTGT 1257
|| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1218 ATGCTTGAGATGGGATTGAAACCCGACGAGATCACTTTCTCTGCTCTTCTTTGTACTTGT 1277
Query 1258 TGCCATTCAGGTCTTTTAAACAAAGGTCAAGAGATCTTTGAGAGGATGAAGAGTGAGTTT 1317
|||||||| ||||||||| ||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1278 TGCCATTCGGGTCTTTTAGACAAAGGTCAAGATATCTTCGAGAGGATGAAGAGTGAGTTT 1337
Query 1318 GGTATTGAGCCGCAAACAGAGCATTATGTTTACATGGTTAAGCTAATGGGAATGGCAGGA 1377
|||||| |||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 1338 GGTATTAAGCCGCAAACAGAGCATTATGTTTACATTGTAAAGCTAATGGGAATGGCTGGA 1397
Query 1378 AAACTAGAAGAAGCATTTGAGTTTGTAATGTCATTACAAAAACCAATTGATTCAGGAATT 1437
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1398 AAACTGGAAGAAGCATTTGAGTTTGTAATGTCATTACGAAAACCAATTGATTCAGGAATT 1457
Query 1438 TTGGGAGCACTATTGTCATGTTGCGAAGTTCATGAGAACACTCATTTGGCTGAAGTTGTA 1497
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1458 TTGGGAGCACTATTGTCATGTTGTGAAGTTCATGAGAACACTCATTTGGCTGAAGTAGTA 1517
Query 1498 GCAGAGAATATACACAAGAATGGAGAAGAGAGAAGAAGTGTTTACAAAGTGATGCTCTCT 1557
|||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1518 GCAGAGAAAATACAGAAGAGTGGAGAAGAGAGAAGAAGTGTTTACAAAGTGATGCTCTCT 1577
Query 1558 AATGTGTATGCAAGATATGGGAGATGGGATGAAGTAGAAAGGCTTAGAGATGGAATATCA 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1578 AATGTGTATGCAAGATATGGGAGATGGGATGAAGTAGAAAGGCTTAGAGATGGAATATCA 1637
Query 1618 GAAAGCTATGGAGGGAAATTGCCAGGCATTAGTTGGTTTTAA 1659
||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1638 GAAAGCTTTGGAGGGAAATTGCCAGGCATTAGTTGGTTTTAA 1679
> Ahg490847 jgi|Araly1|490847|fgenesh2_kg.7__280__AT1G64310.1
Length=1283
Score = 1046 bits (566), Expect = 0.0
Identities = 661/707 (93%), Gaps = 5/707 (1%)
Strand=Plus/Plus
Query 239 CTTATGCTAAAGCTCATCAATTTACTACTGT-TTTGTCACTCTTCTCTCAAATACTGCGT 297
|||||||||||||||||||||||| |||| | ||||||||||||||||||||| ||| ||
Sbjct 179 CTTATGCTAAAGCTCATCAATTTAGTACT-TCTTTGTCACTCTTCTCTCAAATGCTGAGT 237
Query 298 TCTGATACAAGACCTGATAACTTCACCTATGCGTGCT-TAGCTCGTGGCTTTTCAGAGAG 356
|||||||| |||||||||||||||||||||| ||| | ||||||||||||||||||||||
Sbjct 238 TCTGATACGAGACCTGATAACTTCACCTATGTGTG-TGTAGCTCGTGGCTTTTCAGAGAG 296
Query 357 TTTTGATACAAAGGGACTGAGATGTATTCATGGGATTGCAATTGTGTCTGGTCTTGGTTT 416
||| ||| || |||| |||||| ||||||||||||||||| |||| || |||||||||||
Sbjct 297 TTTCGATTCAGAGGGGCTGAGACGTATTCATGGGATTGCAGTTGTATCCGGTCTTGGTTT 356
Query 417 TGATCAAATTTGTGGCAGTGCAATTGTTAAAGCTTATTCAAAAGCTGGACTTATCGTTGA 476
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 357 TGATCAAATTTGTGGCAGTGCAATTGTTAAAGCTTATTCAAATCCTGGACTTATCGTTGA 416
Query 477 AGCAAGTAAGTTGTTTTGTTCAATACCAGATCCAGATCTTGCTCTTTGGAATGTTATGAT 536
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 417 AGCAAGTAAGTTGTTTTGTTCAATACCAGATCCGGATCTTGCTCTGTGGAATGTTATGAT 476
Query 537 TCTTGGATATGGATGCTGTGGATTTTGGGATAAAGGAATCAATTTGTTTAACTTGATGCA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TCTTGGATATGGATGCTGTGGATTTTGGGATAAAGGAATCAATTTGTTTAACTTGATGCA 536
Query 597 ACATCGAGGACACCAACCTAATTGTTATACAATGGTAGCCCTAACAAGTGGTTTGATTGA 656
|||||| ||||| ||| ||||||||||||||||||||||||| | ||||||||||||
Sbjct 537 ACATCGGGGACATGTACCGAATTGTTATACAATGGTAGCCCTAATGACTGGTTTGATTGA 596
Query 657 TCCTAGTTTGTTACTCGTTGCTTGGTCTGTTCATGCATTTTGCTTGAAAATCAATTTAGA 716
||||||||||||||| |||||||||| ||||||| |||||| |||||||||||||||||
Sbjct 597 TCCTAGTTTGTTACTAATTGCTTGGTCCGTTCATGGATTTTGTTTGAAAATCAATTTAGA 656
Query 717 TTCTCATTCTTATGTTGGTTGTGCTTTAGTGAACATGTACTCGAGATGCATGTGCATTGC 776
||||||||||||||||||||||||||| || | |||||||||||||||||||||||| ||
Sbjct 657 TTCTCATTCTTATGTTGGTTGTGCTTTCGTTACCATGTACTCGAGATGCATGTGCATAGC 716
Query 777 TTCTGCTTGTAGTGTGTTTAATAGCATCTCTGAGCCTGATTTAGTTGCGTGTTCTTCTTT 836
||||||| ||||||||| ||||||||||| |||||||||||||||||| |||||||||||
Sbjct 717 TTCTGCTGGTAGTGTGTATAATAGCATCTGTGAGCCTGATTTAGTTGCATGTTCTTCTTT 776
Query 837 GATAACTGGTTATTCGAGATGCGGGAATCACAAGGAGGCTTTGCATCTGTTTGCTGAGCT 896
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 777 GATAACTGGTTATTCGAGGTGCGGGATTCACAAGGAGGCTTTGCATCTGTTTGCTGAGCT 836
Query 897 GAGAATGAGTGGTAAGAAGCCAGATTGTGTTCTTGTGGCGATTGTAT 943
|||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 837 GAGAATGAGTAGTAAGAAGCCAGATTGTGTTCTTGTGGCGATT-TAT 882
Score = 279 bits (151), Expect = 3e-74
Identities = 170/179 (95%), Gaps = 1/179 (1%)
Strand=Plus/Plus
Query 1228 ATCACTTTCTCTGCTCTTCTTTGTACTTGTTGCCATTCAGGTCTTTTAAACAAAGGTCAA 1287
||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||
Sbjct 1051 ATCACTTTCTCTGCTCTTCTTTGTAATTGTTGCCATTCGGGTCTTTTAGACAAAGGTCAA 1110
Query 1288 GAGATCTTTGAGAGGATGAAGAGTGAGTTTGGTATTGAGCCGCAAACAGAGCATTATGTT 1347
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GAGATCTTCGAGAGGATGAAGAGTGAGTTTGGTATTGAGCCGCAAACAGAGCATTATGTT 1170
Query 1348 TACATGGTTAAGCTAATGGGAATGGCAGGAAAACTAGAAGAAGCATTTGAGTTTGTAAT 1406
|||||||| ||||||||||||||||| |||||||| |||||||||||||| |||| |||
Sbjct 1171 TACATGGTGAAGCTAATGGGAATGGCTGGAAAACTGGAAGAAGCATTTGAATTTG-AAT 1228
Score = 195 bits (105), Expect = 1e-48
Identities = 130/142 (92%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 68 ATACCCAGAAGCTGCATAGCTTTGTTACCAAGTCCAAACTCGCGCGCGACCCATATTTCG 127
|||||||||| |||||||||||||||||||||||||||||| |||| ||||| |||||||
Sbjct 38 ATACCCAGAAACTGCATAGCTTTGTTACCAAGTCCAAACTCTCGCGTGACCCGTATTTCG 97
Query 128 CGACGCAACTTGCCAGATTCTATGCGTTAAACGATGATCTTA-TATCTGCTCGCAAACTG 186
|| ||||||||| |||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 98 CGGCGCAACTTGTTAGATTCTATGCGTTAAACGATGATCT-ACTGTCTGCTCGCAAACTA 156
Query 187 TTCGACGTATTTCCTGAGAGAA 208
||||||||||||| ||||||||
Sbjct 157 TTCGACGTATTTCTTGAGAGAA 178
Score = 141 bits (76), Expect = 2e-32
Identities = 132/158 (84%), Gaps = 8/158 (5%)
Strand=Plus/Plus
Query 1032 GGTTTGCTCTGCTCTTATAGACATGTACTCAAAATGTGGGCTTCTAAAATGC-GCGATGA 1090
||| ||||||| ||||||||||||||||||||||||||||||||| | | | |||||||
Sbjct 900 GGTGTGCTCTGGTCTTATAGACATGTACTCAAAATGTGGGCTTCTGGATT-CTGCGATGA 958
Query 1091 GTCTTTTCGCAGGAATTCCAGAGAAAAACATTGTTTCTTTCAACTCCCTTATTTTGGGTC 1150
|||||| || || |||||||||||| |||||||||| ||||||||| |||||| |
Sbjct 959 ATCTTTTTGCGGGGATTCCAGAGAAACACATTGTTTCATTCAACTCCGTTATTTCA---C 1015
Query 1151 TTGGCTTGCACGGTTTTGCTTCCACTGCGTTTG-AAAA 1187
|| || ||||||||||||||| ||||||| | ||||
Sbjct 1016 --GGTTTACACGGTTTTGCTTCCTCTGCGTTAGGAAAA 1051
Score = 104 bits (56), Expect = 2e-21
Identities = 58/59 (98%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 1433 GAATTTTGGGAGCACTATTGTCATGTTGCGAAGTTCATGAGAACACTCATTTGGCTGAA 1491
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1225 GAATTTTGGGAGCACTATTGTCATGTTGTGAAGTTCATGAGAACACTCATTTGGCTGAA 1283
Score = 71.3 bits (38), Expect = 2e-11
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 1 ATGGCCTCGCAGACGCAGTTACGTTTGATTATCTATGA 38
||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCTCGCAGACGCAGTTACGTTTGATTATCTATGA 38
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62201370085
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5