BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64320.1
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315007 jgi|Araly1|315007|fgenesh1_pm.C_scaffold_2000040 2274 0.0
> Ahg315007 jgi|Araly1|315007|fgenesh1_pm.C_scaffold_2000040
Length=1434
Score = 2274 bits (1231), Expect = 0.0
Identities = 1368/1435 (95%), Gaps = 5/1435 (0%)
Strand=Plus/Plus
Query 1 ATGAAAGCTACTGAAAGTAAGCAATTAGGAGAGAAGAACAAAGGGCTAAGATCTCAGATC 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAAGCTAGTGAAAGTAAGCAATTAGGAGAGAAGAACAAAGGGCTAAGATCTCAGATC 60
Query 61 TCCGGTTTGGAATCGGTTTTGAAAGAGAAAGGGGATGAGATCTCAACACTTGTGAACAAG 120
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 61 TCCGGTTTGGAATCGGTTTTGAAAGAGAAAGGGGATGAGATATCAATACTTGTGAACAAG 120
Query 121 TTTGGGAATAGTGAGTTGGGTTTAACATCAAGAATCGAAGATTTGAAATGCCAACTAAAA 180
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 121 TTTGGGAATAGTGAGTTGGGTTTAACATCGAGAATCGAAGATTTGAAATGCCAATTAAAA 180
Query 181 AATTTAGAACAAGAAATCGGTTTCCTTCGTGCTCGAAATGCGGGTTTGGCTGGAAATTTA 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 AATTTAGAACAAGAAATCGGTTTCCTTCGTGCACGAAATGCGGGTTTGGCTGGAAATTTA 240
Query 241 GAAGTTACGAAAGTTGAAGAGAAAGAACGCGTTAAGGGATTAATGGATCAGGTAAATGGT 300
||||||| || ||| |||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 241 GAAGTTAAGAGAGTCGAAGAGAAAGAACGCGTTAAGGGATTGACGGATCAGGTAAATGGT 300
Query 301 ATGAAACATGAGCTTGAATCATTGCGGAGCCAGAAAGACGAATCTGAAGCAAAGTTGGag 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 ATGAAACATGAGCTTGAATCATTGCGGAGCCAGAAAGATGAATCTGAAGCAAAGTTGGAG 360
Query 361 aagaaagtagaagaagttacagagacgaagatgcaattgaaaagtctgaaagaagaaaca 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 AAGAAAGTAGAAGAAGTTACAGAGACGAAGATGCAATTGAAAAGTCTGGAAGAAGAAACA 420
Query 421 gaGGAAGAGAGGAATAGACTGAGTGAAGAGATTGACCAACTTAAAGGAGAAAATCAGATG 480
||||||||| | |||||||||| ||||||||||| ||| |||| ||||||||||||||||
Sbjct 421 GAGGAAGAGCGTAATAGACTGAATGAAGAGATTGGCCATCTTAGAGGAGAAAATCAGATG 480
Query 481 CTGCATAGAAGAATCTCAGAGCTTGATTCATTACATATGGAGATGAAGACGA-AGAGCGC 539
||||||||||||||| ||||||| || ||||||||||||||||||||||| | |||||||
Sbjct 481 CTGCATAGAAGAATCGCAGAGCTCGAATCATTACATATGGAGATGAAGAC-AGAGAGCGC 539
Query 540 TCATGAAATGGAAGATGCGAGCAAGAAATTGGACACTGAAGTTTCTGATCAGAAGAAATT 599
||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 540 TCATGAAATGGAAGATGCGAGCAAGAAATTGGACATTCAGGTTTCTGATCAGAAGAAATT 599
Query 600 GGTCAAGGAACAAGATGATATAATTCGCAGGCTATCGGCAAAAATCAAGGATCAGCAGAG 659
||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 600 GGTCAAGGAACAAGATGATATTATTCGCAGGCTATCGGCGAAAATCAAGGATCAACAGAG 659
Query 660 GCTTCTCAAAGAACAAAAAGACACCATAGACAAGTTCGCTGAAGATCAGAAGCAATCGAA 719
||||||||||||||||||||||||||| || |||||| ||||||||||||||| ||||||
Sbjct 660 GCTTCTCAAAGAACAAAAAGACACCATTGATAAGTTCTCTGAAGATCAGAAGCTATCGAA 719
Query 720 ACGTTGGTCATTTGGTTCGAGCAGGGATTTGAAACTGAATCCAAATGCGTTAGAGAGGAA 779
|||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||
Sbjct 720 ACGTTGGTCATTTGGTTCGAGCCGAGATTCGAAACTGAATCCAAATGCGTTAGAGAGGAA 779
Query 780 AATGGAAGAATTAGCTGAAGATTTCCGGATGAAGATAGAAGATCATATTAGGATACTATA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AATGGAAGAATTAGCTGAAGATTTCCGGATGAAGATAGAAGATCATATTAGGATACTATA 839
Query 840 CAGGAGGATCCATGTAGCTGAACAAATACACTTAGAGAGCAAGAACGAGTATATCAAAAC 899
||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 840 TAGGAGGATCCACGTAGCTGAACAGATACACTTAGAGAGCAAGAACGACTACATCAAAAC 899
Query 900 ACGAGACATGCTTAAAGAAAACAAGGAAAACAGAGAAAGTTTGATGTTTTTCGAAACCCA 959
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CCGAGACATGCTTCAAGAAAACAAGGAAAACAGAGAAAGTTTGATGTTTTTCGAAACCCA 959
Query 960 ATTCAATAAAATGAAAGACGCATTGGAAAAAGGGTACACAGGATCCGAAACCGCGATGAA 1019
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ATTCAATAAAATGAAAGGCGCATTGGAAAAAGGGTACACAGGATCCGAAACCGCGATGAA 1019
Query 1020 GAAACTAGAAGAAGCAGAGGAAGTCACGAACCGAGTTGCTAGAATAGGGAAAGAGATGGA 1079
|||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||
Sbjct 1020 GAAACTAGAAGAAGCAGAGGAAACCACGAACCGAGTTGCTAGATTAGCAAAAGAGATGGA 1079
Query 1080 GTCAGCGAAGCTTTGGGTGAGTGAGAAGAAGAGCGAAGTAGAGACTCTAACCGCAAAGCT 1139
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1080 GTCAGCGAAGCTTTGGGTGAGTGAGAAGAAGAGCGAGGTAGAGACTTTAACCGCAAAGCT 1139
Query 1140 AGAATGCAGCGAAGCTCAAGAGACATTGTTGAAGGAGAAGTTATCAAAGCTAGAGAAGAA 1199
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AGAATGCAGAGAAGCTCAAGAAACATTGTTGAAGGAGAAGTTATCAAAGCTAGAGAAGAA 1199
Query 1200 GCTTGCGGAAGAAGGAACAGAGAAACTGAAACTAGCAAAGGTTTTGAGCAAATTTGAAAC 1259
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1200 GCTTGCGGAAGAAGGAACAGAGAAACTGAAACTAGCAAAGGTTTTGAGCAAATTCGAAAC 1259
Query 1260 GAGAATAAAAGAGCTagaggtgaaggtgaagggaagagaagtagaattgttgagtttagg 1319
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GAGAATAAAAGAGCTTGAGATGAAGGTGAAGGGAAGAGAAGTAGAATTGTTGAGTTTAGG 1319
Query 1320 agaagagaagagagaagCCATAAGACAACTCTGTATTCTTGTTGATTATCATCAAGATCG 1379
|||||||||||||||||| ||||||||||||||||||||||| |||||||| | ||||||
Sbjct 1320 AGAAGAGAAGAGAGAAGCGATAAGACAACTCTGTATTCTTGTGGATTATCAACGAGATCG 1379
Query 1380 ATACAATCAACTCAAGAAATCA--A-TCTTAAAGGTTGATGATCTTAAAACCTAA 1431
|||| ||||||||||||||||| | |||||||||||||| ||||||| ||||||
Sbjct 1380 ATACGATCAACTCAAGAAATCATCAATCTTAAAGGTTGATCATCTTAACACCTAA 1434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53516794225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5