BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64340.1
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906968 jgi|Araly1|906968|Al_scaffold_0002_49 1038 0.0
> Ahg906968 jgi|Araly1|906968|Al_scaffold_0002_49
Length=786
Score = 1038 bits (562), Expect = 0.0
Identities = 717/788 (91%), Gaps = 26/788 (3%)
Strand=Plus/Plus
Query 1 ATGGAGGTCAAACAAAGAGCCTTGGAGTCACCCAAGATGGAAACAAAAGCGGAGGGTGAG 60
|||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||
Sbjct 1 ATGGAGGTCAAACAAAGAGCCTTGGAGTCACCGAAGATGGCAACAAAAGCGGATGGTGAG 60
Query 61 AAGAAGATCACAAAGAAAGATGATATGATGATTAAAGGGCATCTCGAAATCATTGAGGGT 120
||||| ||||| ||||||||||||||||||||||||||| || |||||| |||||||
Sbjct 61 GAGAAG---ACAAATAAAGATGATATGATGATTAAAGGGCATATCAAAATCACTGAGGGT 117
Query 121 TTAAGACAAA-CTAAGACGATAAGAGATGATCAATCTTCTAAGAGCTCGAcatcatcatc 179
|||||| ||| ||||||||| ||||||||||||||||||||||| | | | |
Sbjct 118 TTAAGA-AAAGCTAAGACGACAAGAGATGATCAATCTTCTAAGA----G----C-T--TG 165
Query 180 atcatcatcatcatATATTATGAAAATCAAGATTGGAAATTGTGAGTTATCAGGCAAAAA 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 166 A-CATCATCATCATATATTATGAAAATCAAGATTGGAAATTGTGAGTTATCAGACAAAAA 224
Query 240 CTCGATTCAAAGATCAGAAAACACTAAAATGATGGAAACAT-ACCCAAAGAACAAGATGG 298
|||||| |||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 225 CTCGATACAAAGATCAGAAAACACTAAAAAGATGGAAA-ATCACCCAAAGAACAAGATGG 283
Query 299 TGATCATGAATCCGAAACTAAACACAGAAGAGAGTACCAATCTTGATAAGATGAAGAATA 358
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 284 TGATCATGAATCCGAAACAAAACACAGAAGAGAGTACCAATCTTGATAAGATGAAGAAGA 343
Query 359 GGAAAGTATGGGACTGCGAAAGCACACTCTACGACTCGTTCGAGCTCAACTCTTTCAATC 418
||| || ||||| |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 344 AGAAGGTGTGGGATTGCGAAAGTACACTCTATGACTCGTTCGAGCTCAACTCTTTCAATC 403
Query 419 GCCAACTCAACTCAGCCATCTCTTCCTCAGCTAGATCCATGTCCATGCCTCACCTCTCT- 477
|||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 404 GCCAACTCGACTCAGCCATCTCCTCCTCAGCTAGATCCATGTCCATGCCACACCTCTCTC 463
Query 478 -T-CTCCTCCTCCACCGTCAGAAACAACATCTTCTTCAACCAAGAAGCAACAATCCCCTA 535
| ||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||
Sbjct 464 CTACTCCTCCTCCACCGTCAGAAACAACGTCTTCTTTAACCAAGAAACAACAATCCCCTA 523
Query 536 CCAAGAAGATCTCACGTTCTCTCGGGAAACTCATTAAATCAATGTTCAAACAGAAACAAT 595
|||||||||||||||||||||| |||||||||||||| |||||||| | |||||||||||
Sbjct 524 CCAAGAAGATCTCACGTTCTCTGGGGAAACTCATTAAGTCAATGTTGAGACAGAAACAAT 583
Query 596 CAAACGCT-CTGTTTAAGACAGGTCAT-AGCGGTGTAGACATGGACAAATACTACGTTGT 653
|||| ||| | ||||||| ||||||| | || ||||||||||||||||||||||||||
Sbjct 584 CAAATGCTTC-GTTTAAGGCAGGTCACGA-CGAAGTAGACATGGACAAATACTACGTTGT 641
Query 654 TTTTGACAAGACGGGCTCACTCACCACGATCCCCGAGTCTGGAGAGTCAACAGAGATGGT 713
||| || ||||||||||| || || |||||||||||||| ||||||||||||||||||||
Sbjct 642 TTTCGATAAGACGGGCTCGCTTACGACGATCCCCGAGTCAGGAGAGTCAACAGAGATGGT 701
Query 714 TGGCTCAGAGATCAACTCGCTTGTTAGGAAAACAACGTCCGAGCGAATCCCGCAGAGTCG 773
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 702 TGGCTCAGAGATCAACTCGCTTGTTAGAAAAACAACGTCCGAGCGAATCCCGCTGAGTCG 761
Query 774 GCTCGTTG 781
||| ||||
Sbjct 762 GCTTGTTG 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45938114985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5