BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64350.1
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474917 jgi|Araly1|474917|fgenesh2_kg.2__47__AT1G64350.1 1700 0.0
> Ahg474917 jgi|Araly1|474917|fgenesh2_kg.2__47__AT1G64350.1
Length=1091
Score = 1700 bits (920), Expect = 0.0
Identities = 1036/1093 (95%), Gaps = 4/1093 (0%)
Strand=Plus/Plus
Query 67 GAAAATGGCGAAATCAATGGCGACGCTAGATTCTGGCACCACATGTTCCTCCTGGAATCA 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAAATGGCGAAATCAATGGCGACGCTAGATTCTGGCACCACATGTTCCTCCTGGAATCA 60
Query 127 ATCCGGCGACCGTTTAGCCGCCGGATCTCTCAACGGAAAACTT-TCTATATACGAATCCT 185
|||||| ||| |||||| ||||||| ||| |||| || ||| || ||||||| ||||
Sbjct 61 CTCCGGCCCCCGATTAGCCACCGGATCCCTCGACGG-AAGCTTCTCCGTATACGACTCCT 119
Query 186 CTACTTCGTCTTCTTCGACTTTCAGTTGCACTTCCAAAGTTAGGGTTAGTGAATCGAGTA 245
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 120 CTACTCCGTCTTCTTCGACTTTCACTTGCACTTCCAAAGTTAGGGTTAGTGAATCGAGTA 179
Query 246 TCGTAAAGATCGTTTGGTTGCCTTCAGAGTACGGCGACGCAGTAGCCTGCGTTTGCGAAG 305
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 180 TCGTAAAGATCGTTTGGTTGCCTTCAGAGTACGGCGACGCAGTAGCCTGCATTTGCGAAG 239
Query 306 ACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAGACGCACATGGTCTTGAATGGAAAT 365
| ||||||||||| | |||||||||||||||||||||| |||||| |||||| |||||||
Sbjct 240 ATGGGAGCTTATCAACTTGGGAGGAGCTCTCTGAAGACACACATGCTCTTGAGTGGAAAT 299
Query 366 TGTGTAAGAGTATGAAGAATAAGTCTAGCCAAGTGCTCGATGTTCAATTTGGAGTTTCCA 425
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGTGTAAGAGTATAAAGAACAAGTCTAGCCAAGTGCTCGATGTTCAATTTGGAGTTTCCA 359
Query 426 GAAAGAGTCTAAAGATGGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCT 485
|||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 360 GAAAGAGTCTTAAGATGGTTGCAGCATATTCTGATGGTTACCTTAGGGTTTTTGAGCTGT 419
Query 486 TGAATCCATTGGAGCTAAAGAATTGGCAACTTCAGGCTGAGTTTCAGAATGTTATCGATT 545
||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 420 TGAATCCTTTGGAACTAAAGAATTGGCAACTTCAGGCCGAGTTTCAGAATGTGATCGATT 479
Query 546 CTCTATCGACGCTCGGTAAACCTTCAAGCTTATCTGCTTCTGTTTCTTGGAATCCGATGA 605
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 480 CTCTATCGATGCTCGGTAAACCTTCAAGCTTATCTGCATCTGTTTCTTGGAATCCGATGA 539
Query 606 AAGGTGAAGAGCAAGAACCAAGCTTTGTTTTAGCCTTCAACTCTGACTCTCCACATCTTA 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AAGGTGAAGAGCAAGAACCAAGCTTTGTTTTAGCCTTCAACTCTGACTCTCCACATCTTA 599
Query 666 ACTCTTCCAAGATTTGGGAGTTTGATGAAGCTCATAACAGATGGTTGGCAGTAGCAGAAT 725
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ACTCTTCCAAGATATGGGAGTTTGATGAAGCTCATAACAGATGGTTGGCAGTAGCAGAAC 659
Query 726 TAGCCTTACCAGAAGACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCGAATATTG 785
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 660 TAGCCTTACCAGAAGACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCAAATATTG 719
Query 786 GCCGACCATACGAGGTTGTTGCCGTTGCAACTCATAAAGGCATAGGAATATGGCATGTTG 845
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 720 GCCGACCATACGAGGTTGTTGCTGTTGCAACTCATAAAGGCATAGGAATATGGCATGTTG 779
Query 846 GTCTAGCTCCTGATCTTGAAGGAAGGCTTCCAGTAAAGAAGGTCTCCTCGCTTTCTGGCC 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GTCTAGCTCCTGATCTTGAAGGAAGGCTTCCAGTAAAGAAGGTCTCCTCGCTTTCTGGCC 839
Query 906 ATCAAGGCGAGGTTTGGCAAATGGAATGGGACATGAGTGGCATGACTTTAGCTAGCACTG 965
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 840 ATCAAGGCGAGGTTTGGCAGATGGAATGGGACATGAGTGGTATGACTTTAGCTAGCACTG 899
Query 966 GAAGTGATGGAATGGTCAAATTGTGGCAGTCAAACTTAAACGGTGAGTGGCATGAGCAGG 1025
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 900 GAAGTGATGGAATGGTCAAATTGTGGCAGTCAAACTTAAACGGTGAGTGGCACGAGCAGG 959
Query 1026 CCACGCTTGAACCAGTTCCCTCCTAAGTCCCGCATCACCGTTTTGTCCAAAAACATGTTC 1085
||||||||||||||||||||||||| ||||| ||||||| | ||||||||||||| ||
Sbjct 960 CCACGCTTGAACCAGTTCCCTCCTAGGTCCC-CATCACCCCTATGTCCAAAAACATTTTG 1018
Query 1086 GTTCCATTTCCCACACACTATTTGACAGTATTGCTCAGTTTTGTTTC-GACTTTAAAGAC 1144
||| |||||||| ||| ||||||| ||| |||| |||||||||||| ||||||||||||
Sbjct 1019 GTTTCATTTCCCGGACATTATTTGATAGTGTTGCCCAGTTTTGTTTCTGACTTTAAAGAC 1078
Query 1145 TAGTCTACAAGTT 1157
||||||| |||||
Sbjct 1079 TAGTCTATAAGTT 1091
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47653646250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5