BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G64350.1 Length=1275 Score E Sequences producing significant alignments: (Bits) Value Ahg474917 jgi|Araly1|474917|fgenesh2_kg.2__47__AT1G64350.1 1700 0.0 > Ahg474917 jgi|Araly1|474917|fgenesh2_kg.2__47__AT1G64350.1 Length=1091 Score = 1700 bits (920), Expect = 0.0 Identities = 1036/1093 (95%), Gaps = 4/1093 (0%) Strand=Plus/Plus Query 67 GAAAATGGCGAAATCAATGGCGACGCTAGATTCTGGCACCACATGTTCCTCCTGGAATCA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GAAAATGGCGAAATCAATGGCGACGCTAGATTCTGGCACCACATGTTCCTCCTGGAATCA 60 Query 127 ATCCGGCGACCGTTTAGCCGCCGGATCTCTCAACGGAAAACTT-TCTATATACGAATCCT 185 |||||| ||| |||||| ||||||| ||| |||| || ||| || ||||||| |||| Sbjct 61 CTCCGGCCCCCGATTAGCCACCGGATCCCTCGACGG-AAGCTTCTCCGTATACGACTCCT 119 Query 186 CTACTTCGTCTTCTTCGACTTTCAGTTGCACTTCCAAAGTTAGGGTTAGTGAATCGAGTA 245 ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 120 CTACTCCGTCTTCTTCGACTTTCACTTGCACTTCCAAAGTTAGGGTTAGTGAATCGAGTA 179 Query 246 TCGTAAAGATCGTTTGGTTGCCTTCAGAGTACGGCGACGCAGTAGCCTGCGTTTGCGAAG 305 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 180 TCGTAAAGATCGTTTGGTTGCCTTCAGAGTACGGCGACGCAGTAGCCTGCATTTGCGAAG 239 Query 306 ACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAGACGCACATGGTCTTGAATGGAAAT 365 | ||||||||||| | |||||||||||||||||||||| |||||| |||||| ||||||| Sbjct 240 ATGGGAGCTTATCAACTTGGGAGGAGCTCTCTGAAGACACACATGCTCTTGAGTGGAAAT 299 Query 366 TGTGTAAGAGTATGAAGAATAAGTCTAGCCAAGTGCTCGATGTTCAATTTGGAGTTTCCA 425 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 300 TGTGTAAGAGTATAAAGAACAAGTCTAGCCAAGTGCTCGATGTTCAATTTGGAGTTTCCA 359 Query 426 GAAAGAGTCTAAAGATGGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCT 485 |||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| | Sbjct 360 GAAAGAGTCTTAAGATGGTTGCAGCATATTCTGATGGTTACCTTAGGGTTTTTGAGCTGT 419 Query 486 TGAATCCATTGGAGCTAAAGAATTGGCAACTTCAGGCTGAGTTTCAGAATGTTATCGATT 545 ||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 420 TGAATCCTTTGGAACTAAAGAATTGGCAACTTCAGGCCGAGTTTCAGAATGTGATCGATT 479 Query 546 CTCTATCGACGCTCGGTAAACCTTCAAGCTTATCTGCTTCTGTTTCTTGGAATCCGATGA 605 ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 480 CTCTATCGATGCTCGGTAAACCTTCAAGCTTATCTGCATCTGTTTCTTGGAATCCGATGA 539 Query 606 AAGGTGAAGAGCAAGAACCAAGCTTTGTTTTAGCCTTCAACTCTGACTCTCCACATCTTA 665 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 AAGGTGAAGAGCAAGAACCAAGCTTTGTTTTAGCCTTCAACTCTGACTCTCCACATCTTA 599 Query 666 ACTCTTCCAAGATTTGGGAGTTTGATGAAGCTCATAACAGATGGTTGGCAGTAGCAGAAT 725 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 ACTCTTCCAAGATATGGGAGTTTGATGAAGCTCATAACAGATGGTTGGCAGTAGCAGAAC 659 Query 726 TAGCCTTACCAGAAGACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCGAATATTG 785 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 660 TAGCCTTACCAGAAGACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCAAATATTG 719 Query 786 GCCGACCATACGAGGTTGTTGCCGTTGCAACTCATAAAGGCATAGGAATATGGCATGTTG 845 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 720 GCCGACCATACGAGGTTGTTGCTGTTGCAACTCATAAAGGCATAGGAATATGGCATGTTG 779 Query 846 GTCTAGCTCCTGATCTTGAAGGAAGGCTTCCAGTAAAGAAGGTCTCCTCGCTTTCTGGCC 905 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 GTCTAGCTCCTGATCTTGAAGGAAGGCTTCCAGTAAAGAAGGTCTCCTCGCTTTCTGGCC 839 Query 906 ATCAAGGCGAGGTTTGGCAAATGGAATGGGACATGAGTGGCATGACTTTAGCTAGCACTG 965 ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 840 ATCAAGGCGAGGTTTGGCAGATGGAATGGGACATGAGTGGTATGACTTTAGCTAGCACTG 899 Query 966 GAAGTGATGGAATGGTCAAATTGTGGCAGTCAAACTTAAACGGTGAGTGGCATGAGCAGG 1025 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 900 GAAGTGATGGAATGGTCAAATTGTGGCAGTCAAACTTAAACGGTGAGTGGCACGAGCAGG 959 Query 1026 CCACGCTTGAACCAGTTCCCTCCTAAGTCCCGCATCACCGTTTTGTCCAAAAACATGTTC 1085 ||||||||||||||||||||||||| ||||| ||||||| | ||||||||||||| || Sbjct 960 CCACGCTTGAACCAGTTCCCTCCTAGGTCCC-CATCACCCCTATGTCCAAAAACATTTTG 1018 Query 1086 GTTCCATTTCCCACACACTATTTGACAGTATTGCTCAGTTTTGTTTC-GACTTTAAAGAC 1144 ||| |||||||| ||| ||||||| ||| |||| |||||||||||| |||||||||||| Sbjct 1019 GTTTCATTTCCCGGACATTATTTGATAGTGTTGCCCAGTTTTGTTTCTGACTTTAAAGAC 1078 Query 1145 TAGTCTACAAGTT 1157 ||||||| ||||| Sbjct 1079 TAGTCTATAAGTT 1091 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47653646250 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5