BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64355.1
Length=893
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474915 jgi|Araly1|474915|fgenesh2_kg.2__45__AT1G64355.1 1044 0.0
> Ahg474915 jgi|Araly1|474915|fgenesh2_kg.2__45__AT1G64355.1
Length=772
Score = 1044 bits (565), Expect = 0.0
Identities = 620/646 (96%), Gaps = 5/646 (1%)
Strand=Plus/Plus
Query 41 TCTCTCACCGCGAGAGTAACCGAGAGACATGATTCTGATAAACTCTAATTCTCCGACGCT 100
|||||||||| ||||||||| ||||||||||||||||||||| ||||| |||||||||||
Sbjct 1 TCTCTCACCGTGAGAGTAACAGAGAGACATGATTCTGATAAATTCTAACTCTCCGACGCT 60
Query 101 AATCTCAGCCGTTAGATTCGTGGGCTCATCTCCGTTCACCACTCGGGGGCTTTCTCAGTC 160
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATCTCAGCCGTTAGATTTGTGGGCTCATCTCCGTTCACCACTCGGGGGCTTTCTCAGTC 120
Query 161 CACTGTCTCAATCTCTAGAAACAAAAGCTTCTTCTTCCACTTCACCGAGACGAAGGAGAA 220
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 121 TACTGTCTCAATCTCTAGAAACAAAAGCTTCTTCTTGCACTTCACCGATACGAAAGAGAA 180
Query 221 GAACGCAAGAAGAGATTATTTGAGAGTATCAATCGTGTGTGACGCAGGAGGGATGTTTCC 280
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAAAGCAAGAAGAGATGATTTGAGAGTATCAATCGTGTGTGACGCAGGAGGGATGTTTCC 240
Query 281 GGTGGATCCATGGGCTCCAACCATTGATTCACAGAGCATAGCATCACAACTCTTCGCTGT 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGTGGATCCATGGGCTCCAACCATTGATTCACAGAGCATAGCATCACAACTCTTCGCTGT 300
Query 341 ATCTCTGTTTCCTTACATTGGCTTTCTCTATTTCCTCACTAAATCCAAATCAGCTCCAAA 400
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTCTCTGTTTCCATACATTGGCTTTCTCTATTTCCTCACTAAATCCAAATCAGCTCCAAA 360
Query 401 ACTCACACTTTTCGGTTTCTACTTCTTGCTTGCCTTCGTTGGAGCTACAATTCCAGCTGG 460
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 361 ACTCACACTTTTTGGTTTCTACTTCTTGCTTGCCTTCGTTGGAGCTACAATTCCTGCTGG 420
Query 461 GATTTATGCTAAGGTGCATTATGGAACATCGTTGTCGAATGTTGATTGGTTACACGGAGG 520
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 GATTTATGCTAAGGTACATTATGGAACATCGTTGTCGAATGTTGATTGGTTACATGGAGG 480
Query 521 AGCTGAATCACTTCTTGCTCTTACCAATTTGTTTATCGTGTTGGGTCTTAGACAAGCTCT 580
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 481 AGCTGAATCACTTCTTGCTCTTACCAATTTGTTTATCGTGTTGGGTCTTAGACAAGCTTT 540
Query 581 GAGGAAGTCTCAAGATGATGATGATGATAAACTTGGTAATGATGATGAAG-TTCCAACAA 639
||| ||||||||||||||||||||| | || ||||||||||||||||||| ||| |||||
Sbjct 541 GAGAAAGTCTCAAGATGATGATGAT-A-AA-CTTGGTAATGATGATGAAGCTTC-AACAA 596
Query 640 CTCAAGAACAAGGGAAATCTTCAGTGTAGTAAAACAAATGTAAATT 685
|||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 597 CTCAAGAACAAGAGAAATCTTCAGTCTAGTAAAACAAATGTAAATT 642
Score = 174 bits (94), Expect = 8e-43
Identities = 122/134 (91%), Gaps = 7/134 (5%)
Strand=Plus/Plus
Query 764 TGAGTTCAACGCTAG-TTAGATGTGTTTTGTTCTTATTTGGTCTTTTTCTCCTTAATATG 822
||||||||||||||| ||||||| |||| ||||||||||||| ||||| | |||||||||
Sbjct 642 TGAGTTCAACGCTAGTTTAGATGCGTTTGGTTCTTATTTGGT-TTTTT-TTCTTAATATG 699
Query 823 CTAAAGTATCATTTTGTGGAGGTATAAATCCGATTGAGAAATGGCATT---TAGTTACTA 879
|||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 700 CTAAAGTAACATTTTGTGGAGGTATAAATCCGATTGAGAA-TGGCATTGAGTAGTTACTA 758
Query 880 TTGGAATATTGTTC 893
||||||| ||||||
Sbjct 759 TTGGAATCTTGTTC 772
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33090691956
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5