BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G64360.1

Length=563
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg474914 jgi|Araly1|474914|fgenesh2_kg.2__44__AT1G64360.1           503    6e-142


> Ahg474914 jgi|Araly1|474914|fgenesh2_kg.2__44__AT1G64360.1
Length=462

 Score =  503 bits (272),  Expect = 6e-142
 Identities = 375/422 (89%), Gaps = 18/422 (4%)
 Strand=Plus/Plus

Query  59   ATGTCGTTTAGAAAAGTAGAGAAGAAACCAACTGAAATGGGCCGAAACATGACCCACGAG  118
            |||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct  1    ATGTCGTTTAGAAAAGTAGAGAAGAAACCAACCGAAATGGGCCGACAGATGACCCACGAG  60

Query  119  AAGTCGGACTCTGATTCGGACAACGAAGGAGCCCCCATGACTGTTGGAGGTTACACTGAA  178
            |||||||||||||| || |||||||||||| |||||||||| | ||| ||||||||||||
Sbjct  61   AAGTCGGACTCTGACTCAGACAACGAAGGAACCCCCATGACGGCTGGCGGTTACACTGAA  120

Query  179  TTCGTTGCCCGCAGCGACTCTGACTGGGACGAACCGGTTTATTCTGGCAAAGCCCGTTCT  238
            |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct  121  TTCGTTGCCCGCAGCGACTCTGACTGGGACGAACCTTTTTATTCTGGCAAAGCCCGTTCT  180

Query  239  AATTATAACCTCACCGGCACCGCAAAAGGAACTGGTCCCATCAATAGCTTCAGCCGCAAA  298
            ||      |||||||| ||  | ||||    ||||||||| |||||||| ||||||||||
Sbjct  181  AA------CCTCACCGCCAA-G-AAAA----CTGGTCCCACCAATAGCTACAGCCGCAAA  228

Query  299  CACTTCCCTAATTACTAATCATATGGGCAGTG-CTACGTAAAAGTGAGAAACGAAGACAT  357
             | ||| ||||| |||||||||||||||  || | |||||||||||||||| ||||| ||
Sbjct  229  AATTTCTCTAATAACTAATCATATGGGCT-TGGCAACGTAAAAGTGAGAAATGAAGATAT  287

Query  358  GCAGGCTCACTAGCTAGTTGAATAATGCCCATATAAATTATGTACTATGTCTGAATGTAA  417
            ||| ||||| |   ||||| |||||||||||||||| ||||||| ||||||||||||| |
Sbjct  288  GCAAGCTCA-T---TAGTTAAATAATGCCCATATAACTTATGTATTATGTCTGAATGTCA  343

Query  418  TAAATAAGAATCCAAGGATGGATGATGACGCATGAACATATCAATGATTATAGTCTCATT  477
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  344  TAAATAAGAATCCAAGGATGGATGATGCCGCATGAACATATCAATGATTATAGTCTCATT  403

Query  478  GT  479
            ||
Sbjct  404  GT  405



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20565862471


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5