BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64370.1
Length=742
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474913 jgi|Araly1|474913|fgenesh2_kg.2__43__AT1G64370.1 900 0.0
> Ahg474913 jgi|Araly1|474913|fgenesh2_kg.2__43__AT1G64370.1
Length=716
Score = 900 bits (487), Expect = 0.0
Identities = 670/750 (89%), Gaps = 45/750 (6%)
Strand=Plus/Plus
Query 1 ACAAACAACACAAATACAAACCATAAAA-TCACATCTTC-TTTACAACAATGCAGTACTA 58
||| |||||| ||||||||||||||||| |||||||||| |||| ||| |||||||||||
Sbjct 1 ACACACAACATAAATACAAACCATAAAACTCACATCTTCTTTTA-AAC-ATGCAGTACTA 58
Query 59 CGAAAACCGTGAGAAAGACTACTACGAGGTGGCTCAAGGCCAACGCAATGGTTATGGCCA 118
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 59 CGAAAACCGTGAGAAAGACTACTACGAGGTGGCACAAGGCCAACGCAATGGTTATGGCCA 118
Query 119 GAGCCAGAGCCACAACCACGAGGGATATGGCCAGAGCCAGAGCCGTGGGGGATATGGCCA 178
||||||| | ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 119 GAGCCAG-G-----GCCACGAGGGATATGGTCAGAGCCAGAGCCGTGGGGGATATGGCCA 172
Query 179 GATCCATAACCGTGAGGGTTATAACCAAAACCGTGAGGGATATAGCCAAAGCCAGAGTCG 238
| || || | | |||||||||||||||||||| |||||||||||
Sbjct 173 G----AT--CC---A--G----------AACCGTGAGGGATATAGCCAGAGCCAGAGTCG 211
Query 239 CCCAGTATATGGGCTTAGCCCGACTTTGAACCACCGTAGCCACGGTGGGTTTCTTGATGG 298
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 212 CCCAGTATATGGGCAAAGCCCGACTTTGAACAACCGTAGCCACGGTGGGTTTCTTGATGG 271
Query 299 GCTCTTCAAGGGTCAAAATGGCCAAAAGGGTCAGAGTGGGCTAGGCACGTTTCTAGGGCA 358
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 272 GCTCTTCAAGGGTCAAAATGGCCAAAAGGGTCAGAGTGGCCTAGGCACGTTTCTAGGGCA 331
Query 359 ACACAAGAGCCAAGAGGCTAAAAAGAGTCAAGGACATGGGAAGCTCTTGGGGCAACATGA 418
|| |||||||||||||| ||| ||| |||||||||||||||| ||| | |||| | | |
Sbjct 332 ACGCAAGAGCCAAGAGGATAATAAGGGTCAAGGACATGGGAAACTCATAGGGC-AGA--A 388
Query 419 CCAGAAGAAAACTCATGAGACAAACAGTGGTCTTAATGGCCTTGGAATGTTCATTAACAA 478
|||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 389 CCAGAAGACAACTTATGAGACAAACAAAGGTCTTAATGGCCTTGGAATGTTCATTAACAA 448
Query 479 TGGTGAGAAGAAACATAGGAGGAAAAGTGAGCACAAGAAGAAGAACAAGGATGGGCATGG 538
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 449 TGGTGAGAAGAAAAATAGGAGGCAAAGTGAGCACAAGAAGAAGAACAAGGATGGGCATGG 508
Query 539 CAGTGGTAATGAGAGTGGAAGCAGCAGCGGTAGCGACAGCGACTGAATATCATATGCTTG 598
|||||| |||||||||||||||| |||||||||||||||||||||||| | ||||| |||
Sbjct 509 CAGTGGCAATGAGAGTGGAAGCAACAGCGGTAGCGACAGCGACTGAATCTGATATGTTTG 568
Query 599 CTCTGAAGAAAGTAACGCTTCTAAGAGTGA--CTA-A-A--TTAAGTACTTGGATGTAAT 652
|||| || ||||||||||||||||||| || ||| | | |||||||||||||||||||
Sbjct 569 CTCTAAAAAAAGTAACGCTTCTAAGAGAGAGACTATACAAATTAAGTACTTGGATGTAAT 628
Query 653 ACTTAAAA-TAAAATCACTTAGGTGGTTGTCT-T-TGTGTGTCCTATATAACCTCGCTAC 709
|||||||| ||||||||||||||||||||| | | ||||||||||||||||||| |||||
Sbjct 629 ACTTAAAAATAAAATCACTTAGGTGGTTGTGTCTCTGTGTGTCCTATATAACCTTGCTAC 688
Query 710 TACATGAATCTACTTTTATAGTTTTGTTGC 739
|| |||||||||||||||| |||||||||
Sbjct 689 TA--TGAATCTACTTTTATATTTTTGTTGC 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27334131489
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5