BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64380.1
Length=1528
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474912 jgi|Araly1|474912|fgenesh2_kg.2__42__AT1G64380.1 1650 0.0
> Ahg474912 jgi|Araly1|474912|fgenesh2_kg.2__42__AT1G64380.1
Length=1394
Score = 1650 bits (893), Expect = 0.0
Identities = 1088/1177 (92%), Gaps = 34/1177 (3%)
Strand=Plus/Plus
Query 29 AAATTCTACTTTTCTTTCAAAAACAATCTCTCATTATCTCAATCTTACTCTTGTTCAATC 88
|||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||
Sbjct 41 AAATTCTACTTTTCTTTCAAAACCAATCTCTCATTATCTCAATCATATTCTTGTTCAATC 100
Query 89 TCTTTTGAACTTGAAAAACCATCATTCT-ATCAAATCAAACACAATTGTTAGGGTTTCTT 147
||||||||||||||||| || || || | |||||||||||||||| |||||||||||||
Sbjct 101 TCTTTTGAACTTGAAAATCCTTC-TTTTGCTCAAATCAAACACAATAGTTAGGGTTTCTT 159
Query 148 T-TTATCTTATACTCCACGAAACGTCTGGTTGAGAAAAAATGGAAGAAAGCAATGATATT 206
| || ||||||||| | | | | | |||||||||||||||||||| ||
Sbjct 160 TCTT-TCTTATACT-C-C---A---C-------G---AAATGGAAGAAAGCAATGATCTT 200
Query 207 TTTCAGAACAATTTCAGTCCTAAAATCTCAGAAATCAGAGCATCTCTGTCTCAGATCATA 266
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 TTTCAGACCAATTTCAGTCCTAAAATCTCAGAAATCAGAGCATCTCTGTCTCAGATCATA 260
Query 267 TTAGCAGGAGGACCAAACACACTCGACTCAATCTTCTCACTTCTCACTCCCTCCTCCGTA 326
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 261 TTAGCAGGAGGACCAAACACACTCGACTCAATCTTCTCACTTCTCACTCCCTCCACCGTA 320
Query 327 GAATCCGCCACAACATCATTCAACACTCACAATCCTCCGCCACCGCCGCAGCTCGGGTCC 386
||||||||| ||||||| ||||||| || |||||||| |||||||||||||||||| |||
Sbjct 321 GAATCCGCCGCAACATCTTTCAACAATCTCAATCCTCAGCCACCGCCGCAGCTCGGCTCC 380
Query 387 TCCGTCTATCTCCGCCAACGAGATATCATCGAGAAGTTCCACCTTCAGAACAGAGCAATC 446
|||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 381 TCCGTCTATCTCCGGCAACGAGATATCATCGAGAAATTCCACCTTCAAAACAGAGCAATC 440
Query 447 TCCACTCCTCATCCTCCTCTGTTTTCCTCAACGTACGATCATCATCAAACTTCCGAGCTA 506
|||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 441 TCCACTACTCATCCTCCTCTGTTTTCCTCATCGTTCGATCATCATCAAACTTCCGAGCTA 500
Query 507 ATGCTCCAAGCGGCGGCCGGGTCTCCAGCCGCCGCTTTCGCCGCTGCGTTAGCGGCTGGG 566
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 501 ATGCTCCAAGCGGCGGCCGGGACTCCAGCCGCCGCTTTCGCAGCTGCGTTAGCGGCTGGG 560
Query 567 AGGGTGACGAAAAAGAAGAAACTTTACAGAGGAGTGAGGCAGAGACATTGGGGAAAATGG 626
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 AGGACGACGAAAAAGAAGAAACTTTACAGAGGAGTGAGGCAGAGACATTGGGGAAAATGG 620
Query 627 GTTGCGGAGATAAGATTGCCGCAAAACAGAATGAGGGTTTGGTTAGGTACTTACGACACG 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 GTTGCGGAGATAAGATTGCCGCAAAACAGAATGAGGGTTTGGTTAGGTACTTACGACACG 680
Query 687 GCGGAAGCCGCCGCTTACGCTTACGATCGCGCCGCCTATAAGCTCCGTGGAGAATACGCT 746
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 681 GCGGAAGCCGCCGCTTATGCTTACGATCGCGCCGCCTATAAGCTCCGTGGAGAATATGCT 740
Query 747 CGTCTCAATTTTCCTAATCTCAAAGACCCGAGTGAGCTACTCGGACTCGGAGATTCCTCT 806
||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 741 CGTCTCAATTTCCCAAATCTCAAAGACCCGAGTGAGTTACTCGGACTCGGAGATTCCTCC 800
Query 807 AAGCTAATAGCTCTCAAGAACGCCGTCGACGGGAAGATCCAATCCATTTGCCagagagtc 866
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 801 AAGCTGATAGCTCTCAAGAACGCCGTCGACGGGAAGATCCAATCGATTTGCCAGAGAGTC 860
Query 867 agaaaagagagagcaaaaaagagcgtaaaagtgagcaaaaaCTCGTCGGCCACGGCGGAT 926
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 861 AGAAAAGAGAGAGCAAAAAAGAGCGGGAAAGTGAGCAAAAACTCGTCGGCGACGGCGGAT 920
Query 927 TCTTCGTGTTTGTCATCGCCGGAGATTCTGTCGTCGTCTCCGGTGACGACAACTACTACT 986
||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||
Sbjct 921 TCTTCGTGTTTGTCATCGCCGGAGATTCTTTCGTCGTCTCCGGCGACGACAACTGCTACT 980
Query 987 GCGGTTACTTCAGAGGATAGTTATTGGGTTTCACCTATGGGTTTGTGTAACAGTGAAAAT 1046
||||||||||||||||||||||| |||||||| |||||||||||||||||||| || | |
Sbjct 981 GCGGTTACTTCAGAGGATAGTTACTGGGTTTCGCCTATGGGTTTGTGTAACAGCGAGATT 1040
Query 1047 AGTTCTCCGGTATCAGTTTCGGTC-CCTA-GTGA----AG---T-AC--CGGCGACGGCG 1094
|||||||||| ||| ||||||||| || | | || || | || |||||| ||||
Sbjct 1041 AGTTCTCCGGCATCGGTTTCGGTCTCCGATGAGATTCCAGCGATGACGACGGCGATGGCG 1100
Query 1095 GAGGAAGAGGCAATGATGGGAGTGGACACTGATGGGTTTTTATTAGCGAGGATGCCATCG 1154
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1101 GAGGAAGAGGCAATGATGGGAGTGGACACTGATGGGTTCTTGCTAGCGAGGATGCCATCG 1160
Query 1155 TTCGATCCAGAGCTGATTTGGGAAGTTCTTGCCAATT 1191
|||||||||||||| ||||||||||||||||||||||
Sbjct 1161 TTCGATCCAGAGCTTATTTGGGAAGTTCTTGCCAATT 1197
Score = 257 bits (139), Expect = 1e-67
Identities = 188/209 (90%), Gaps = 13/209 (6%)
Strand=Plus/Plus
Query 1278 GAAAAATTAGGGTTTTAGGTGTTAATTTAGGGTTTAAAGTAAAACCGGATCTTTTGTTAA 1337
|||||||||||||||||||||| ||||||||||||||| ||| | ||||||||||
Sbjct 1198 GAAAAATTAGGGTTTTAGGTGTGAATTTAGGGTTTAAA--CAAA----A-CTTTTGTTAA 1250
Query 1338 AATCATTCGAAAGTTGTTAAATAATATAATTAGGGTTTCTCAAATACAATGTAAAGCCTC 1397
|||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||
Sbjct 1251 AATCATTCGAAAGTTGTTAAATAATATAATTAGGGTTTCTTGATTACAATCTAAAGCCTC 1310
Query 1398 GTGGTTTTTGAAAGAGGTTGTGAAAGCTCCttttttt-GAATTTCTGTTTTAGATCATCG 1456
||||||||||||||||||||||||||||||||||||| |||||||| | | ||||||
Sbjct 1311 GTGGTTTTTGAAAGAGGTTGTGAAAGCTCCTTTTTTTTGAATTTCTAT---A--TCATCG 1365
Query 1457 AAGGACTTTCTTTCTGATTGTACTTAGAA 1485
||||||||||||| |||||||||||||||
Sbjct 1366 AAGGACTTTCTTTGTGATTGTACTTAGAA 1394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57211547990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5