BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64390.1
Length=2660
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924488 jgi|Araly1|924488|scaffold_200049.1 3149 0.0
Ahg489943 jgi|Araly1|489943|fgenesh2_kg.6__3077__AT4G11050.1 680 0.0
> Ahg924488 jgi|Araly1|924488|scaffold_200049.1
Length=1905
Score = 3149 bits (1705), Expect = 0.0
Identities = 1838/1904 (97%), Gaps = 2/1904 (0%)
Strand=Plus/Plus
Query 191 tctctctcttttttttAGCCATGGAGAAATTTGCGCCTGTCGCTGCTCTGTTACTGCTTC 250
||||| ||||||||| || |||||||||||||||||| || |||||||||||||||||||
Sbjct 3 TCTCTATCTTTTTTTCAGTCATGGAGAAATTTGCGCCCGTAGCTGCTCTGTTACTGCTTC 62
Query 251 TTCTCTGTTTTCCGGTAGCTTTCTCCGGTCATGATTATGGTCAAGCTCTTTCCAAGAGTC 310
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 63 TTCTCTGTTTTCCGGTAGCTTTCTCCGGTCATGATTATGGTCAAGCTCTTTCAAAGAGTC 122
Query 311 TTCTCTTCTTCGAAGCTCAGAGATCTGGTGTTCTTCCTCGTAACCAAAGAGTCACTTGGC 370
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 123 TTCTCTTCTTCGAAGCTCAGAGATCTGGTGTTCTTCCTCGTAACCAGAGAGTCACTTGGC 182
Query 371 GCTCTCACTCCGGTCTCACCGACGGCAAATCAAGCGGCGTGAATCTGGTCGGAGGTTACT 430
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 GTTCTCACTCCGGTCTCACCGACGGCAAATCAAGCGGCGTGAATCTGGTCGGAGGTTACT 242
Query 431 ACGACGCCGGAGACAATGTGAAATTTGGATTACCGATGGCTTTCACGGTGACGATGATGG 490
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 243 ACGACGCCGGAGACAATGTGAAATTCGGACTACCGATGGCTTTCACGGTGACGATGATGG 302
Query 491 CGTGGAGTGTGATTGAGTACGGGAATCAATTACAAGCCAACGGCGAGCTTGGAAACTCCA 550
|||||||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||
Sbjct 303 CGTGGAGTGTGATTGAATACGGTAATCAGTTACAAGTTAACGGCGAGCTTGGAAACTCCA 362
Query 551 TTGACGCCATTAAATGGGGTACTGATTATTTCATCAAAGCCCATCCTGAGCCCAACGTCC 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 TTGACGCCATTAAATGGGGTACTGATTATTTCATCAAAGCCCATCCTGAGCCCAACGTCC 422
Query 611 TTTACGGCGAGGTTGGAGATGGCAACACCGACCATTACTGTTGGCAGAGACCGGAAGAAA 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 TTTACGGCGAGGTTGGAGATGGCAACACCGACCATTACTGTTGGCAGAGACCGGAAGAAA 482
Query 671 TGACGACGGACCGGAAAGCTTACAGGATAGATCCGAGTAATCCCGGGTCGGATCTTGCCG 730
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 483 TGACGACGGACCGTAAAGCATACAGGATAGATCCGAGTAATCCCGGGTCGGATCTTGCCG 542
Query 731 GAGAAACAGCAGCCGCCATGGCCGCCGCATCAATTGTTTTCCGCCGATCTAACCCTGTTT 790
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 543 GAGAAACAGCAGCCGCCATGGCCGCCGCATCAATTGTGTTCCGCCGATCTAACCCTGTTT 602
Query 791 ACTCTAGGCTACTACTCACTCACGCCTATCAGTTGTTTGATTTCGCCGACAAATACAGAG 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 ACTCTAGGCTACTACTCACTCACGCCTATCAGTTGTTTGATTTCGCCGACAAATACAGAG 662
Query 851 GAAAATACGACAGCAGTATCACTGTTGCCCAGAAATACTACCGATCCGTCAGCGGTTACA 910
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 663 GAAAATACGACAGCAGTATCACTGTTGCCCAGAAATACTACCGATCCGTCAGTGGTTACA 722
Query 911 ATGACGAGTTATTGTGGGCCGCTGCGTGGCTATACCAAGCTTCGAACAATCAGTTCTACT 970
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 723 ATGACGAGTTACTGTGGGCAGCTGCGTGGCTATACCAAGCTTCGAACAATCAGTTCTACT 782
Query 971 TGGACTACTTGGGTCGCAACGGTGACGCCATGGGTGGTACCGGTTGGTCCATGACTGAGT 1030
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 783 TGGACTACTTGGGTCGCAACGGTGACGCCATGGGTGGAACCGGTTGGTCTATGACTGAGT 842
Query 1031 TTGGTTGGGACGTTAAGTACGCTGGTGTTCAAACCCTTGTTGCCAAGTTTTTGATGCAAG 1090
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 TCGGTTGGGACGTTAAGTACGCTGGTGTTCAAACCCTTGTTGCCAAGTTTTTGATGCAAG 902
Query 1091 GCAAAGCAGGACGTCACGCACCTGTGTTCAGGAAGTATCAAGAGAAAGCTGATTCCTTTA 1150
||||||||||| | ||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 903 GCAAAGCAGGAAGGCACGCGCCTGTGTTCAGGAAGTTTCAAGAGAAAGCTGATTCCTTTA 962
Query 1151 TGTGTTCCTTGTTGGGTAAAAGCTCGAGGAACATTCAGAAGACACCAGGTGGTTTGATTT 1210
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 963 TGTGTTCCTTGTTGGGTAAAAGCTCGAGGAACATTCAGAAGACACCTGGTGGTTTGATTT 1022
Query 1211 TCAGACAACGTTGGAACAATATGCAGTTTGTCACAAGCGCTTCCTTCTTGACCACGGTTT 1270
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1023 TCAGACAACGTTGGAACAATATGCAGTTTGTCACTAGTGCTTCCTTCTTGACCACGGTTT 1082
Query 1271 ACTCAGATTACCTAACTTCTTCTCGAAGCAACTTGAGATGTGCCGCGGGAAATGTCGCAC 1330
|||| |||||||| |||||||| ||||||||||||||||||||||| |||||||| || |
Sbjct 1083 ACTCTGATTACCTTACTTCTTCGCGAAGCAACTTGAGATGTGCCGCTGGAAATGTTGCTC 1142
Query 1331 CTTCGCAGCTTCTTTCCTTTGCTAAATCTCAGGTGGATTATATTCTTGGAGATAACCCGA 1390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 CTTCGCAGCTTCTTTCCTTTGCTAAATCTCAGGTGGATTATATTCTTGGAGATAACCCGA 1202
Query 1391 GAGCTACCAGCTACATGGTTGGTTATGGTAACAATTTCCCTCAGAGAGTTCACCACAGAG 1450
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 GAGCAACCAGCTACATGGTTGGTTATGGTAACAATTTCCCTCAGAGAGTTCACCACAGAG 1262
Query 1451 GCTCTTCCATCGTCTCTGTCAAGGTGGACCGTACATTTGTCACCTGCCGAGGTGGATATG 1510
|||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1263 GCTCCTCCATTGTCTCTGTCAAGGTCGACCGTACATTTGTCACATGCCGAGGTGGATATG 1322
Query 1511 CCACTTGGTTCAGCCGTAAAGGCAGTGACCCGAACCTTCTCACTGGTGCTATTGTCGGTG 1570
|||| ||||| |||||||||||||| |||||||||||||||||||| |||||||| || |
Sbjct 1323 CCACGTGGTTTAGCCGTAAAGGCAGCGACCCGAACCTTCTCACTGGCGCTATTGTAGGCG 1382
Query 1571 GCCCTGATGCTTACGACAATTTCGCTGACAGGAGAGATAACTATGAGCAGACTGAGCCTG 1630
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 GTCCTGATGCTTACGACAATTTCGCTGACAGGAGAGATAACTATGAGCAGACTGAGCCTG 1442
Query 1631 CTACTTACAACAATGCACCACTCCTTGGTGTTCTTGCTCGTCTCAGCAGTGGTCATTCCG 1690
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1443 CTACTTACAACAATGCACCACTTCTTGGTGTTCTCGCTCGTCTCAGCAGTGGTCATTCCG 1502
Query 1691 GTTATAGCCAGTTTCTTCCAGTGGTTCCTGCTCCTGTTGTCCGAAGACCAATGCCTATTC 1750
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1503 GATATAGTCAGTTTCTTCCAGTGGTTCCTGCTCCTGTTGTCCGAAGACCAATGCCTATTC 1562
Query 1751 GTAGACCGAAAGTGACTACTCCAGTCCGAGCTTCTGGTCCAGTGGCTATAGTTCAGAAGA 1810
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1563 GTAGACCGAAAGTGACTACTCCTGTCCGAGCTTCTGGTCCAGTGGCTATAGTTCAGAGGA 1622
Query 1811 TAACTAGTTCATGGGTCTCAAAGGGAAGGACTTACTACAGATACTCAACAACTGTGATTA 1870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623 TAACTAGTTCATGGGTCTCAAAGGGAAGGACTTACTACAGATACTCAACAACTGTGATTA 1682
Query 1871 ACAAATCTTCTAGACCTCTGAAAAGTCTCAACCTTTCGATCAAGAATCTCTATGGACCAA 1930
||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1683 ACAAATCTTCTAGACCTTTGAAAAGTCTCAACCTGTCGATCAAGAATCTCTACGGACCAA 1742
Query 1931 TCTGGGGACTCTCGAGATCAGGCAACTCGTTCGGTTTACCCTCGTGGATGCACTCATTGC 1990
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1743 TCTGGGGACTCTCGAGATCAGGAAATTCGTTCGGTTTACCCTCGTGGATGCACTCATTGC 1802
Query 1991 CATCCGGAAAATCCCTAGAGTTCGTCTACATTCACTCAACAACACCTGCAAATGTCGCGG 2050
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1803 CATCCGGAAAATCCCTAGAGTTCGTCTACATTCACTCAACAACACCTGCCAATGTCGCGG 1862
Query 2051 TATCCAGCTACACTTTGGCTTGA-TCAGACAACAACAACAACAT 2093
|||| |||||||| ||||||||| | |||| |||||||||||||
Sbjct 1863 TATCGAGCTACACGTTGGCTTGACT-AGACTACAACAACAACAT 1905
> Ahg489943 jgi|Araly1|489943|fgenesh2_kg.6__3077__AT4G11050.1
Length=1884
Score = 680 bits (368), Expect = 0.0
Identities = 1075/1409 (76%), Gaps = 78/1409 (6%)
Strand=Plus/Plus
Query 292 CAAGCTCTTTCCAAGAGTC-TTCTCTTCTTCGAAGCTCAGAGATCTGGTGTTCTTCCTCG 350
|||||||| ||| || | |||||||||| |||||||||||||| || || ||||
Sbjct 85 CAAGCTCTAAGCAAAAG-CATTCTCTTCTTTGAAGCTCAGAGATCAGGACACCTCCCTCC 143
Query 351 TAACCAAAGAGTCACTTGGCGCTCTCACTCCGGTC-TCACCGACGGCAAATCAAGCGGCG 409
|||||| ||||| | ||||| ||||| ||||||| | | ||| ||||||||||| ||||
Sbjct 144 TAACCAGAGAGTTTCATGGCGATCTCATTCCGGTCTTTA-CGATGGCAAATCAAGTGGCG 202
Query 410 TGAATCTGGTCGGAGGTTACTACGACGCCGGAGACAATGTGAAATTTGGATTACCGATGG 469
|| |||| || ||||| || || ||||||||||||||||||||||| || | || ||||
Sbjct 203 TGGATCTAGTGGGAGGATATTATGACGCCGGAGACAATGTGAAATTCGGGCTCCCAATGG 262
Query 470 CTTTCACGGTGACGATGATGGCG-TGGAGTGTGATTGAGTACGG-GAATCA-ATTACAAG 526
||||||||||||| | || | | ||||| | || || ||||| | || | | ||
Sbjct 263 CTTTCACGGTGACAACAAT-GTGTTGGAGCATCATCGAATACGGTG-GCCAGCTGA-AAT 319
Query 527 CCAACGGCGAGCTTGGAAACT-CCATTGACGCCATTAAATGGGGTACTGATTATTTCATC 585
| |||||||| ||||| | | ||||||||||| |||| ||||| ||||||||||||||
Sbjct 320 CTAACGGCGAACTTGGTCA-TGCCATTGACGCCGTTAAGTGGGGAACTGATTATTTCATT 378
Query 586 AAAGCCCATCCTGAGCCCAACGTCCTTTACGGCGAGGTTGGAGATGGCAACACCGACCAT 645
||| |||| ||||| || |||||||| || || ||||| |||||||| || | ||||||
Sbjct 379 AAAACCCACCCTGAACCTAACGTCCTCTATGGAGAGGTGGGAGATGGTAAGTCGGACCAT 438
Query 646 TACTGTTGGCAGAGACCGGAAGAAATGACGACGGACCGGAAAGCTTACAGGATAGATCC- 704
|| |||||||| || || || |||||||| || || || || ||||||| || || ||
Sbjct 439 TATTGTTGGCAAAGGCCAGAGGAAATGACCACTGATCGTAAGGCTTACAAAATTGA-CCG 497
Query 705 GAGTAATCCCGGGTCGGATCTT-GCCGGAGAAACAGCAGCCGCCATGGCCGCCGCATCAA 763
|| |||||||| || ||| || ||||||||||| || ||||| ||||| || || || |
Sbjct 498 GAACAATCCCGGTTCAGAT-TTAGCCGGAGAAACCGCTGCCGCAATGGCTGCGGCTTCCA 556
Query 764 TTGTTTTCCGCCGATCT-AACCCTGTTTACTCTAGGCT-A-CTACTCAC-TCACGCCTAT 819
| ||||||||||| ||| | || | |||||| ||| | |||||| | ||||||| ||
Sbjct 557 TCGTTTTCCGCCGCTCTGATCCAT-CATACTCT--GCTGAGCTACTC-CGTCACGCCCAT 612
Query 820 CAGTTGTTTG-ATTTCGCCGACAAATACAGAGGAAAATACGACAGCAGTATCACTGTTGC 878
||| | |||| |||| || |||||||||||||| ||||| ||||| || || || || ||
Sbjct 613 CAGCTATTTGAATTT-GCGGACAAATACAGAGGCAAATATGACAGTAGCATTACCGTGGC 671
Query 879 CCAGAAATACTACCGATCCGTCAGCGGTTACAATGACGAGTTATTGTGGGCCGCTGCGTG 938
|| |||||||||||||||||||||||||||||||| || ||| | ||||| ||||| ||
Sbjct 672 ACAAAAATACTACCGATCCGTCAGCGGTTACAATGATGAATTACTATGGGCTGCTGCATG 731
Query 939 GCTATACCAAGCTTCGAACAATCAGT-TCTA-CTTGGACTACTTGGGTC--GCAACGGTG 994
| |||||||||| | || || | | | || || | | ||| | || | | || ||||
Sbjct 732 GTTATACCAAGCAACCAATGATAAATAT-TATCTAG-ATTACCTCGG-CAAG-AATGGTG 787
Query 995 ACGCCATGGGTGGTACCGGTTGGTCCATGACTGAGTTTGGTTGGGACGTTAAGTACGCTG 1054
|| | ||||| ||||| || ||||| |||||||| |||||||||||||||||||| ||||
Sbjct 788 ACTCAATGGGCGGTACGGGCTGGTCGATGACTGAATTTGGTTGGGACGTTAAGTATGCTG 847
Query 1055 GTGTTCAAACCCTTGTTGCCAAGTTTTTGATGCAAGGCAAAGCAGGACGT-CACGCA-CC 1112
| |||||||||||||| || ||| ||||||||||||| |||| ||| | ||| | ||
Sbjct 848 GCGTTCAAACCCTTGTCGCTAAGGTTTTGATGCAAGGGAAAGGTGGA-GAACACACTGCC 906
Query 1113 TGTGTTC-AG-GAAGTATCAAGAGAAAGCTGATTCC-TTTATGTGTTCCTTGTTGGGTAA 1169
|||||| || | ||| ||| ||||||| || | ||||||||||| ||||| |||||
Sbjct 907 -GTGTTCGAGCG--GTACCAACAGAAAGCAGAA-CAGTTTATGTGTTCGTTGTTAGGTAA 962
Query 1170 AAGCTCGAGGAACATTCAGAAGACACCAGGTGGTTTGATTTTCAGACAACGTTGGAACAA 1229
|||| ||| ||||||| |||| || || || ||| | |||||| ||||| | ||||||||
Sbjct 963 AAGCACGAAGAACATTAAGAAAACTCCCGGCGGTCTAATTTTCCGACAAAGCTGGAACAA 1022
Query 1230 TATGCAGTTTGTCACAAGCGCTTCCTTCTT-GACCACGGTTTACTCAGATTACCTAACTT 1288
||||||||||||||| || || || ||||| | || | |||||||| || || || |||
Sbjct 1023 TATGCAGTTTGTCACGAGTGCCTCTTTCTTAG-CCGCCGTTTACTCCGACTATCTCTCTT 1081
Query 1289 CTTCTCGAA-GCA-A-CTTGAGATGTGC-CGCGGGAA-ATGTCGCACCTTCGCAGCTTCT 1343
| || | || | | | || | ||| | | || || || || | | | | || || ||
Sbjct 1082 CATC-CAAAAG-AGATCTCC-GTTGTTCTCAAGGAAACATTTCTC-CATCC-CAACTCCT 1136
Query 1344 TTCCTTTGCT-AAA-TCTCAGGTGGATTATATTCTTGGAGATAACCCGAGAGCTACCAGC 1401
||| || ||| || ||||||||||| ||||| ||||| ||||| ||||| || ||
Sbjct 1137 AGA-TTT-CTCAAAATCACAGGTGGATTACATTCTCGGAGACAACCCTAGAGCGACAAGT 1194
Query 1402 TACATGGTTGGTTATGGTA-ACAATT-TCCCTCAGAGA-GTTCACCA-CAGAGGCTCTTC 1457
|||||||| || || || | | || | ||| | || | ||||| || | | || || ||
Sbjct 1195 TACATGGTCGGATACGG-AGAGAACTATCCA-C-GACAAGTTCATCATC-GTGGTTCGTC 1250
Query 1458 CATCGTCTC-TGTCAAGGTGGACCGTACATTT-GTCACCTGCCGAGGTGGATATGCCACT 1515
|| ||||| | |||| || || | | | || || || ||||| || || || |||||
Sbjct 1251 TATTGTCTCCT-TCAATGTCGATCAAA-AGTTCGTGACTTGCCGTGGCGGTTACGCCACA 1308
Query 1516 TGGTTCAGCCGTAAAGGCAGTGACCCGAACCTTCTCACTGGTGCTATTGTCGGTGG-CCC 1574
||||| ||||| ||||| || || ||||| || | || || ||||| || ||||| |||
Sbjct 1309 TGGTTTAGCCGCAAAGGAAGCGATCCGAATGTTTTAACCGGAGCTATAGTGGGTGGACCC 1368
Query 1575 TGATGCTTACGACAATTTCGCTGAC-AG-GAGAGATAACTATGAGCAGACTGAGCCTGCT 1632
|| || ||||| || ||||||||| | | | || || |||||||| || || || ||
Sbjct 1369 -GACGCATACGATAACTTCGCTGACCAACG-G-GACAATTATGAGCAAACCGAACCAGCA 1425
Query 1633 ACTTACAACAATGCACCACTCCTTGGTGT 1661
||||||||||| || ||||| ||||||||
Sbjct 1426 ACTTACAACAACGCGCCACTTCTTGGTGT 1454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100329705330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5