BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G64405.1

Length=605
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg474908 jgi|Araly1|474908|fgenesh2_kg.2__38__AT1G64405.1           556    5e-158


> Ahg474908 jgi|Araly1|474908|fgenesh2_kg.2__38__AT1G64405.1
Length=430

 Score =  556 bits (301),  Expect = 5e-158
 Identities = 399/443 (90%), Gaps = 20/443 (5%)
 Strand=Plus/Plus

Query  51   atttt-tttttGGGAATTGATGGGCAATTGCATGGAGAGATGGATGCAAGGAGAAGGGGA  109
            ||||| ||||| ||  || ||||| |||||||||||||||||| ||||||||||||||||
Sbjct  1    ATTTTGTTTTT-GGTGTTAATGGGTAATTGCATGGAGAGATGGTTGCAAGGAGAAGGGGA  59

Query  110  AGAAGGAAAGATAGAGGTGACAGAAAGAGCAAAAGAGTCCTTCAAACTTGATGGTGATGA  169
            ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  60   AGATGGAAAGATAGAGGTGACAGAAAGAGCCAAAGAGTCCTTCAAACTTGATGGTGATGA  119

Query  170  CAATGAAGATGGTCATGGTGGGATGAAGGTAAAGATCGTGCTTACAAGACATGAATTGGA  229
             |||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct  120  TAATGGAGATGGTCATGGTGGGATGAAGGTGAAGATAGTGCTTACAAGACATGAATTGGA  179

Query  230  CATGTTTTTGCTTCAGATGAATAGGAGTCATGATGGAAACTTGATGATTACCAAAGACGT  289
            |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||
Sbjct  180  CATGTTTTTGCTTCAGATGAATAGGAATCATGATGGAAACTTGATGATTACCAGAGATGT  239

Query  290  TATGGTAGAGCTAGAGAAGAGGATCATAAGAGCTTCGTCATTCTCATCACTATCATCATC  349
            |||||||||||||||||||||||||||||||||||| ||||| |||||||   |||| ||
Sbjct  240  TATGGTAGAGCTAGAGAAGAGGATCATAAGAGCTTCATCATTGTCATCAC---CATCGTC  296

Query  350  ACCTTCATCGATAGCATGGGAACCGGCTTTAGAGAGCATCCTGGAGTGTCCAGAAGTCCA  409
                  || |   |||||||||||| |||||||||||||  |||||||||||||||||||
Sbjct  297  G-----AT-G---GCATGGGAACCGTCTTTAGAGAGCATTGTGGAGTGTCCAGAAGTCCA  347

Query  410  GGAAATGGATAGATAAAGAT-GC-TAAAGATGTG----ATTTATGATAAAAATGAGTTTG  463
            |||||||||||||| ||||| |  ||||||||||    |||| |||||||||||||||||
Sbjct  348  GGAAATGGATAGATGAAGATTGTATAAAGATGTGTTCTATTTTTGATAAAAATGAGTTTG  407

Query  464  ATCATGATGATCATCATATATTG  486
            |||||||||||||||||||||||
Sbjct  408  ATCATGATGATCATCATATATTG  430



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22111291860


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5