BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64430.1
Length=2040
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474906 jgi|Araly1|474906|fgenesh2_kg.2__36__AT1G64430.1 3061 0.0
> Ahg474906 jgi|Araly1|474906|fgenesh2_kg.2__36__AT1G64430.1
Length=1998
Score = 3061 bits (1657), Expect = 0.0
Identities = 1904/2019 (94%), Gaps = 33/2019 (2%)
Strand=Plus/Plus
Query 6 AACCGAAGCAATAGATAGAACCaaaaaaaaTACTATCATTAGAGACCGTTGGTTTCTTCT 65
|||| ||||||||||||||| ||||||||| | | |||||||||||||||| | ||||
Sbjct 4 AACCTAAGCAATAGATAGAA-CAAAAAAAA-A--AGCATTAGAGACCGTTGG--T-TTCT 56
Query 66 TCCCTCTTTCTTAGCCTCTCGTTTCTCATCTCCGAGAACCACCACCG--ATGCTCCTCCG 123
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 57 TCCCTCTTTCTTAGCCTCTCGTTTCTCATCTCCGAGAACCACCACCGATATGCTCCTCCG 116
Query 124 TCTTCTTCGCCGGTGATTTTGTCTTCCGATTGTTA-TCAATGAGTCTTCGTGTAGTTTCC 182
||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 117 TCTTCTTCGCCGGTGATTTTGTCTTCCGATT-ATAGTCAATGAGTCTCCGTGTAGTTTCC 175
Query 183 TCCGTTTTCTCCGGAATCAATCGAATCCCTAACCTCCACGAGACTCATACTCTTCTTCGC 242
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 176 TCCGTTTTCTCCGGAATCAATCGAACCCCTAACCTCCACGAGACTCATACTCTTTTTCGC 235
Query 243 TCTCATGTCTTCTCTTTCTTCTTCAAACCGGCGAATATCGGTAGTATACGGCGACTG-GT 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 236 TCTCATGTCTTCTCTTTCTTCTTCAAACCGGCGAATATCGGTAGTATACGGCGACCGATT 295
Query 302 CTTATCCCCATCATATGGAGACCGGAGCAGAGATAGTGTTGGCTCCGCCGCCGATGTTTC 361
| ||| | |||| |||||||| ||||| ||||| ||||| | ||||||||||||||||
Sbjct 296 C-TATTCTCATCCTATGGAGAGCGGAGTAGAGACAGTGTCAGAGCCGCCGCCGATGTTTC 354
Query 362 GTCATCTATTCTCGACGACGAGCTTCTGAGCAGCGTATCCGCCGTTAGAGATGCCGATGA 421
| | ||||||||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 355 GACGTCTATTCTCGACGACGAGCTTTTGAGCAGCGTATCCGCCGTTAGAGACGCGGATGA 414
Query 422 AGCGCTCGCGATGATTTCTGATCGGTTCGGGTCAAATCGCGGTGGAATCGTTGAACTTGA 481
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 415 AGCGCTCGAGATGATTTCGGATCGGTTCGGGTCAAATCGCGGTGGAATCGTTGAACTTGA 474
Query 482 AGATTGCCGTTCGATTATCTCCGCTGCTGTCAGTCGCGGCAATGTGGACCTTGCGTTGTC 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 AGATTGCCGTTCGATTATCTCCGCTGCTGTCAGTCGCGGCAATGTGGACCTTGCGTTGTC 534
Query 542 GATATTCTACACCATGCGAGCGAGTTTCGATTTAGGTGGAAGTGACAATGATCGATGGAG 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GATATTCTACACCATGCGAGCGAGTTTCGATTTAGGTGGAAGTGACAATGATCGATGGAG 594
Query 602 TTGGTCAAGGCCTGATGTTGAAGTGTACACGATGTTGGTTAATGGTCTTGCTGCTTCCTT 661
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 595 ATGGTCAAGGCCTGATGTTGAAGTGTACACGATGTTGGTTAATAGTCTTGCTGCTTCCTT 654
Query 662 AAGGGTTTCTGATTCTTTAAGGATTATCAGAGATATTTGCCGTGTTGGTATCTCCCCTGC 721
|||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||
Sbjct 655 AAGGGTTTCTGATTCTCTAAGAATCATCAGAGATATTTGCCGTGTTGGTATCTCCCCTGC 714
Query 722 TGAGGAGGTTCCCTTTGGTAAAATTGTGAGATGTCCGAGC-TGTTTGATTGCCATAGCTG 780
|||||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||
Sbjct 715 TGAGGAGGTTCCCTTTGGTAAAATTGTGCGATGTCCGA-CATGTTTGATTGCCATCGCTG 773
Query 781 TTGCACAACCACAGCATGGAGTTCAGATTGTATCTTGCGCTAATTGCCGTTACCAATACG 840
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 774 TTGCACAACCCCAGCATGGAGTTCAGATTGCATCTTGCGCTAATTGCCGTTACCAATACG 833
Query 841 AGCTTTTCTCTGGTGACATAACTAGCATTGACTCAGAAGAGCTCGGCAAGGACATTCCTC 900
|||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 834 AGCTTTTCTCTGGTGACATAACCAGCATTGAATCTGAAGAGCTCGGCAAGGACATTCCTC 893
Query 901 TCTGGGAAAAAGGGCTCAGACTTATCCAGATAAAGAAGAACAAAATCACATCTTCAGTGC 960
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 894 TCTGGGAAAAAGGGCTCAGACTAATCCAGATTAAGAAGAACAAAATCACATCTTCGGTGC 953
Query 961 ACTCTATTGTGGTACAGACTCCTTCCGGTACAGCACGAACGCACCGGTTTGCCACTGAGA 1020
|||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 954 ACTCTATTGTGGTACAAACTCCTTCTGGTACAGCACGAACACACCGGTTTGCCACTGAGA 1013
Query 1021 CAGCCGAACTCCCTGCGCAAGAAGGAGAAAGAGTGACAATTGCATCCGCTGCTCCTTCTA 1080
|||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1014 CAGCTGAGCTCCCTGCGCAAGAAGGAGAAAGAGTGACAATTGCATCTGCTGCTCCTTCTA 1073
Query 1081 ATGTTTACAGACAAGTGGGACCTTTCAAGTTTATCTCCAAAGCTCCAAACTTTTACCCTG 1140
||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1074 ATGTTTACAGACAGGTGGGACCGTTCAAGTTTATCCCCAAAGCTCCAAACTTTTACCCTG 1133
Query 1141 GAGAACCTATGAGCCTCACAAAACACAAGGATGGACGAGAATCTATCTTGCTAAGGCCTC 1200
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1134 GAGAACCTATGAGCCTCACAAAACACAAGGATGGACGAGAATCTCTCTTGCTAAGGCCTC 1193
Query 1201 CTAGTAAAGATGGAGATAAGATCTTACAACCCTCGTTTCTAATACCCCTTCTTGCAATTT 1260
||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 1194 CTAGTAAAGATGGAGATAAGATCTTGCAACCCTCGTTTCTAATACCTCTTCTTGCTGTTT 1253
Query 1261 TGGCTACTGGAGATGCTGCTTCTGGTGTTATTGATCCCAGTTTGCCTCAGTTACTCTCAG 1320
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1254 TGGCTACTGGAGATGCTGCTTCTGGTATTATTGATCCCAGTTTGCCTCAATTACTCTCAG 1313
Query 1321 TTGCTACTGTTACATCACTAGCGATAGGAGCAACCGTAAATTCTTTTGTCCTTCCTAAGC 1380
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1314 TTGCTGCTGTTACATCACTAGCGATCGGAGCAACCGTAAATTCTTTTGTCCTTCCTCAGC 1373
Query 1381 TAAATCAGCTCCCTGAGCGAACAGTAGATGTGGTTGGTATCAAGCAGCAACTTTTATCTC 1440
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1374 TAAATCAGCTCCCTGAACGAACAGTAGATGTGGTTGGTATCAAGCAGCAACTTTTATCGC 1433
Query 1441 AATATGATGTGCTCCAGCGTCGCATTAGAGATCTAAAAGAAGCAGTTGAGAAAGAGGTGT 1500
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 AGTATGATGTGCTCCAGCGTCGCATTAGAGATCTAAAAGAAGCAGTTGAGAAAGAGGTGT 1493
Query 1501 GGATGTTGGCTCGAATGTGCCAGCTCGAGAACAAAATTTTAGCAGTGGGAGAGCCAGCTT 1560
||||||| ||| ||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 1494 GGATGTTAGCTAGAATGTGCCAGCTTGAGAACAAAATTTTAGCTGTGGGGGAGCCAGCTT 1553
Query 1561 ACCGTACTCGAAGAACAAGAGTAAAGAAGGTACGAGAAAGTCTAGAGAACTCCATAAAGG 1620
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1554 ACCGTACTCGAAGAACAAGAGTAAAGAAGGTAAGAGAAAGTCTAGAGAACTCGATAAAGG 1613
Query 1621 GAAAGATTGATCTGATCGATAGTTATGCTAGAATATCTTCAATGATTGAGATTGAGGTGG 1680
|||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1614 GAAAGATTGAGCTGATCGATAGTTATGCCAGAATATCTTCAATGATTGAGATCGAGGTGG 1673
Query 1681 AAATGGACAGTGATGTTCTTGCAGCCGAGGCAGTGAACAATACTGAAAACATTGCTCAAC 1740
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1674 AAATGGACACTGATGTTCTTGCAGCCGAGGCAGTGAACAATACTGAAAACATTGCGCAAC 1733
Query 1741 AGATAGAGCAGATCATGGAACTTGAAAACCTTGAAGAGAAATGGAAAATACAGGCTGAAG 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 AGATAGAGCAGATCATGGAACTTGAAAACCTTGAAGAGAAATGGAAAATACAGGCTGAAG 1793
Query 1801 CAAACGACGAGGCCGAAAGACTACTTAGCTCCCAACCTTAAGCACTCACACACT-T-GTC 1858
||||||||||||||||||||||||||||||||||||||||| | |||||||| | |||
Sbjct 1794 CAAACGACGAGGCCGAAAGACTACTTAGCTCCCAACCTTAATTAAACACACACTCTTGTC 1853
Query 1859 AACAAAC-CCGGTCAAAAACTCTGGAGCATCGCTAAAAGTTAAGTTTCTTTTGTCGGTCG 1917
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1854 AACAAAAACCGGTCAAAAACTCTGGAGCATCACTAAAAGTTAAGTTTCTTTTGTCGGTCG 1913
Query 1918 CTATAAGTTAATGTTGATAAATTTGTTTGTAATACTATAGTTTAATAATCACCGAAA-TC 1976
|||||||||||||||||||||||||||| | || ||| | | |||||||| |
Sbjct 1914 CTATAAGTTAATGTTGATAAATTTGTTT-T--TA--ATA----A-T---CACCGAAACT- 1959
Query 1977 ATTAATTTCTTGTTTCTTGTCCATTTGTAATCttttttt 2015
|||| ||| ||||||||||||||||||||||||||||||
Sbjct 1960 ATTACTTTATTGTTTCTTGTCCATTTGTAATCTTTTTTT 1998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76713753430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5