BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64440.1
Length=1453
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924484 jgi|Araly1|924484|scaffold_200045.1 1814 0.0
> Ahg924484 jgi|Araly1|924484|scaffold_200045.1
Length=1090
Score = 1814 bits (982), Expect = 0.0
Identities = 1055/1091 (97%), Gaps = 2/1091 (0%)
Strand=Plus/Plus
Query 52 TCATCGCCTCTTCGAGCTTCGATGGTTGGGAATATTCTGGTGACCGGTGGTGCTGGTTAC 111
|||||||||||| |||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 1 TCATCGCCTCTTGGAGCTTCGATGGTTGGAAATATTCTGGTAACCGGCGGTGCTGGTTAC 60
Query 112 ATCGGAAGTCACACGGTTCTTCAGCTTCTTCTCGGAGGCTATAACACCGTCGTTATAGAC 171
||||||||||||||||||||||||||||||||||| ||||| |||||||| || || |||
Sbjct 61 ATCGGAAGTCACACGGTTCTTCAGCTTCTTCTCGGCGGCTACAACACCGTTGTCATCGAC 120
Query 172 AACCTCGACAATTCCTCTCTCGTTTCGATCCAACGCGTCAAGGATCTCGCCGGAGATCAT 231
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 AACCTCGACAATTCCTCTCTCGTTTCGATCCAACGCGTCAAGGAACTCGCCGGAGATCAT 180
Query 232 GGACAAAATCTCACCGTCCACCAGGTGGACCTTCGCGATAAACCCGCACTTGAGAAGGTT 291
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGAAAAAATCTCACCTTCCACCAGGTGGACCTTCGCGATAAACCCGCACTTGAGAAGGTT 240
Query 292 TTCTCCGAAACAAAGTTTGATGCAGTAATGCATTTTGCTGGATTGAAAGCAGTTGGTGAG 351
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 241 TTCTCCGAAACAAAGTTTGATGCAGTAATGCATTTTGCTGGATTGAAAGCAGTCGGCGAG 300
Query 352 AGCGTGGCGAAACCACTTCTGTATTATAACAATAACTTGATTGCGACTATTACACTTTTG 411
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 301 AGCGTGGCGAAACCGCTTCTGTATTATAACAATAACTTGATTGGGACTATTACACTTTTG 360
Query 412 GAAGTAATGGCTGCACACGGATGTAAAAAGCTTGTATTTTCTTCGTCCGCTACTGTGTAT 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAAGTAATGGCTGCACACGGATGTAAAAAGCTTGTATTTTCTTCGTCCGCTACTGTGTAT 420
Query 472 GGCTGGCCAAAGGAGGTTCCTTGTACAGAAGAGTCTCCCCTGTCTGGAATGAGTCCTTAT 531
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 GGCTGGCCAAAGGAGGTTCCTTGTACAGAAGAGTCTCCCCTGTCTGGGATGAGTCCTTAT 480
Query 532 GGACGGACAAAGCTGTTCATAGAGGACATTTGCCGTGATGTACAACGTGGTGATCCTGAA 591
|||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 481 GGACGGACTAAGCTGTTCATCGAGGACATTTGCCGTGATGTACAACGTGGTGACCCTGAA 540
Query 592 TGGAGAATCATAATGCTGAGGTACTTTAACCCTGTGGGAGCTCACCCTAGCGGTCGCATT 651
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 TGGAGAATCATAATGCTGAGGTACTTTAACCCTGTGGGAGCTCACCCTAGCGGTCGTATT 600
Query 652 GGTGAGGATCCTTGTGGGACTCCAAATAATCTCATGCCTTATGTCCAGCAAGTCGTTGTT 711
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 601 GGTGAGGATCCTTGTGGGACTCCAAATAATCTCATGCCGTATGTCCAGCAAGTCGTTGTT 660
Query 712 GGGAGGCTACCTAACCTAAAAATTTATGGAACTGACTATACCACTAAAGATGGCACTGGT 771
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 661 GGGAGGCTACCTAACCTAAAAATTTATGGAACCGACTATACCACTAAAGATGGCACCGGT 720
Query 772 GTACGAGACTATATTCATGTTGTTGATCTAGCAGATGGCCATATATGTGCGCTTCAAAAG 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GTACGAGACTATATTCATGTTGTTGATCTAGCAGATGGCCATATATGTGCGCTTCAAAAG 780
Query 832 CTAGACGATACTGAAATAGGTTGTGAGGTATACAACCTGGGAACCGGAAAAGGAACAACA 891
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTAGACGATACTGAAATAGGTTGTGAGGTATACAACCTGGGAACCGGAAAAGGAACAACG 840
Query 892 GTGTTGGAGATGGTTGATGCATTTGAGAAAGCTTCTGGAATGAAAATCCCACTGGTGAAG 951
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 841 GTGTTGGAGATGGTTGATGCATTTGAAAAAGCTTCTGGAATGAAAATCCCACTGGTGAAG 900
Query 952 GTTGGAAGGAGACCAGGTGATGCAGAAACCGTCTATGCGTCAACAGAAAAAGCTGAACGC 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GTTGGAAGGAGACCAGGTGATGCAGAAACCGTCTATGCGTCAACAGAAAAAGCTGAACGC 960
Query 1012 GAACTAAACTGGAAGGCAAATTTTGGAATCGAAGAAATGTGTAGGGATCAGTGGAACTGG 1071
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 961 GAACTAAACTGGAAGGCAAATTTTGGAATCGAAGAAATGTGTAGGGACCAATGGAACTGG 1020
Query 1072 GCAAGCAACAATCC-TTTCGGTTACGGTTCTTCACCAAACTCAACATAACGAAGCTAATG 1130
|||||||||||||| ||| || ||||||||||||||| || |||||||||||||||| |
Sbjct 1021 GCAAGCAACAATCCCTTT-GGATACGGTTCTTCACCAGACACAACATAACGAAGCTAGTA 1079
Query 1131 TATCCAACACT 1141
||||||||||
Sbjct 1080 CATCCAACACT 1090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54354779615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5