BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64450.1
Length=1249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906954 jgi|Araly1|906954|Al_scaffold_0002_35 1454 0.0
> Ahg906954 jgi|Araly1|906954|Al_scaffold_0002_35
Length=1050
Score = 1454 bits (787), Expect = 0.0
Identities = 966/1050 (92%), Gaps = 21/1050 (2%)
Strand=Plus/Plus
Query 61 ATGGCCAAGCCTCACGATCGTCGCCGTTCTTCCGGCAGAACTAATTTAGCTTCTTGCGCC 120
|||||||||||||||| ||||||||||||||| ||| |||| || ||||||||||||||
Sbjct 1 ATGGCCAAGCCTCACGGTCGTCGCCGTTCTTCTGGCCGAACAAACCTAGCTTCTTGCGCC 60
Query 121 GTCGCCACCGTCTTCTTACTCATCTTACTCGTTGTTCTCCTTGTCGTTTACTTCACAGTC 180
||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||
Sbjct 61 GTCGCCACCGTCTTCTTGCTCATCTTACTCGTTGTCCTTCTTGTTGTTTACTTCACAGTC 120
Query 181 TTCAAACCAAAAGACCCCAAGATCTCCGTTAACGCCGTCCAACTCCCCTCATTCGCCGTC 240
|||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 121 TTCAAACCAAAAGACCCCAAGATCTCCGTTAACGCCGTCCAACTTCCGTCATTTGCCGTC 180
Query 241 TCAAACAATACCGCTAACTTCTCCTTCTCTCAGTACGTCGCCGTTAGAAACCCTAACCGT 300
|| ||||| || || |||||| | |||||||| |||||||||||||||||||||||||||
Sbjct 181 TCCAACAACACAGCCAACTTCACTTTCTCTCAATACGTCGCCGTTAGAAACCCTAACCGT 240
Query 301 GCCGTTTTCTCTCATTACGACAGCTCTATTCAGCTTCTTTATTCGGGTAATCAAGTCGGG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCCGTTTTCTCTCATTACGACAGCTCTATTCAGCTTCTTTATTCGGGTAATCAAGTCGGG 300
Query 361 TTTATGTTCATACCCGCCGGTAAAATTGATTCGGGTCGGATTCAATACATGGCCGCCACT 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 301 TTTATGTTCATACCCGCCGGTAAAATTGATTCCGGTCGGATTCAATACATGGCTGCCACT 360
Query 421 TTTACCGTTCATTCTTTCCCTATTTCTCCTCCTTCCTCCTCCGCTATCTCCACCGTCTCT 480
|| ||||| || || ||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 361 TTCACCGTCCAATCCTTCCCTATTTCTCTTCCTTCCTCCTCCGCCATCTCCACCGTCTCC 420
Query 481 GCCGCCGTTATTCCAGACTCTCCGATTATTCCCGGTCCACCGGATTTCACTGTAACTCCA 540
||||||||| |||||||||||||| | || |||||||||||||||||||| ||||||||
Sbjct 421 GCCGCCGTTGTTCCAGACTCTCCGGTAATACCCGGTCCACCGGATTTCACAGTAACTCCG 480
Query 541 AGAAACCCAGATTCACCGTATTTTCCAGGATATCCAGAATCGCCGGATTTACCGGGAAAT 600
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 481 AGAAACCCAGATTCGCCGTATTTCCCAGGATATCCAGAATCGCCGGATTTACCGGGGAAT 540
Query 601 CCAGGTTCACCGGATTTTTCTGGGAATCCGGGTCCTCCGAGTTTCCCGAGAAATCCAGGC 660
|||| ||| ||||||||| ||||||||||||||||||||||||| ||||| |||||||||
Sbjct 541 CCAGTTTCGCCGGATTTTCCTGGGAATCCGGGTCCTCCGAGTTTTCCGAGGAATCCAGGC 600
Query 661 TCGCCGGAGTTTCCAGGAAACCCAGGAGCTCCGATTATACCGAGAAATCCAGGCTCGCCG 720
||||||||||||||||| ||||||||||||||| || |||||||||||||||| ||||||
Sbjct 601 TCGCCGGAGTTTCCAGGGAACCCAGGAGCTCCGGTTTTACCGAGAAATCCAGGTTCGCCG 660
Query 721 GAATTTCCAATAAATCCACCGAGAAATCCAGGTGCTCCGGTGATTCCGAGAAACCCAAAT 780
||||||||| | ||||| |||||||||||||||||||||| | |||||||||||||||||
Sbjct 661 GAATTTCCAGTGAATCCTCCGAGAAATCCAGGTGCTCCGGCGTTTCCGAGAAACCCAAAT 720
Query 781 CCACCGGTTTTTCCAGGTAA-CCCGAG------AA---GC-A----TGGGTCCACCGGGG 825
|||||||||||||||| || |||| | || || | |||||||||||||
Sbjct 721 TCACCGGTTTTTCCAGGGAATCCCGGGTCGGGTAACCCGCGAAACATGGGTCCACCGGGT 780
Query 826 TTTCCTGGAATCGGAGGTCCGCCGGGATTTCCGGGTACGCC------ATTCGGCGGAGGA 879
||||| |||||||||| |||||||||||||||||||||||| ||||||||| |||
Sbjct 781 TTTCCAGGAATCGGAGCTCCGCCGGGATTTCCGGGTACGCCGGTGGGATTCGGCGGGGGA 840
Query 880 GGGACGGGGCCAACGCTAGGAGATGGATATGCGAATCCGGGTTTCGGGTATGGGAATCGG 939
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GGAACGGGGCCAACGCTGGGAGATGGATATGCGAATCCGGGTTTCGGGTATGGGAATCGG 900
Query 940 GTCGGACCAACAATGGAGATAGAGTCGAAGATGGAGTTAGCGGGTCGGGTCAAAGTGCTG 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GTCGGACCAACAATGGAGATAGAGTCGAAGATGGAGTTAGCGGGTCGGGTCAAAGTGCTG 960
Query 1000 CACGTGTTCACACATCACGTGGTTGCTAAATCGGATTGTCGAGTCACCGTCTCTATTGCC 1059
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 961 CACGTGTTCACACATCACGTGGTTGCTAAATCGGATTGTCGGGTCACCGTCTCTATTGCC 1020
Query 1060 GATGGTTCCGTCTTGGGTTTCCATTGCTAA 1089
||||||||||||||||| ||||||||||||
Sbjct 1021 GATGGTTCCGTCTTGGGCTTCCATTGCTAA 1050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46662450408
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5