BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64460.1
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906953 jgi|Araly1|906953|Al_scaffold_0002_34 1491 0.0
> Ahg906953 jgi|Araly1|906953|Al_scaffold_0002_34
Length=1677
Score = 1491 bits (807), Expect = 0.0
Identities = 874/907 (96%), Gaps = 2/907 (0%)
Strand=Plus/Plus
Query 1 ATGCAAGATTCTTCAGGTCTCAACTATGTATCTGTGTTCAAGCCTATGGATGAAGAACCA 60
||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 772 ATGCAAGATTCTTCAGGTCTCAACTATGTATCTGTCTTCAAGCCCATGGATGAGGAACCA 831
Query 61 ATGGCTGTGAACAATCCTCAGCAGCTTCCTGTGTCATCAGACGGTCAGGGATTGAAGAGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 ATGGCTGTGAACAATCCTCAGCAGCTTCCTGTGTCATCAGACGGTCAGGGATTGAAGAGA 891
Query 121 GGAACTAGAGTAGGAGAAGGGGCAACAAGAGAAGTTGCAGCTTACTTGTTAGATCATCCA 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 892 GGAACTAGAGTAGGAGAAGGGGCAACAAGAGAAGTTGCTGCTTACTTGTTAGATCATCCA 951
Query 181 AAGAGCGGACTAAGATCTGTGTCTAAAGAAGTTATGGGTTTTGCCGGTGTGCCACCAACT 240
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 AAAAGCGGACCGAGATCTGTGTCTAAAGAAGTTATGGGTTTTGCCGGTGTGCCACCAACT 1011
Query 241 GCTATGGTCAGAAGCTCACACAAAGTGTATAACTACCCAAATGGGTTCAGCAGCTGTGCT 300
|||||||||||||||||||||||||| |||||||||| ||| ||||||||||| ||||||
Sbjct 1012 GCTATGGTCAGAAGCTCACACAAAGTTTATAACTACCTAAAGGGGTTCAGCAGTTGTGCT 1071
Query 301 ACAAAAGATGCCAAAGTTGGTTCTTTGCAAATGTTCATGAAGAACAATGGAAGCTGCGAA 360
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1072 ACAAAAGATGCCAAAATTGGTTCTCTGCAAATGTTCATGAAGAACAATGGAAGCTGCGAA 1131
Query 361 GACATCGGCCCTGGAGCGTTTCCTGTTGAGGAAGTGCACAAAATCTGTGTCTTTGACATA 420
||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1132 GACATTGGCCCTGGAGCTTTTCCTGTCGAGGAAGTGCACAAAATCTGCGTCTTTGACATA 1191
Query 421 AGAATGGCAAATGCAGATCGACATGCTGGAAACATATTGACCGGGAAAAGCGAAGAAGGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 AGAATGGCAAATGCAGATCGACATGCTGGAAACATATTGACCGGGAAAAGCGAAGAAGGA 1251
Query 481 AAAACTCTTCTTATTCCCATCGATCATGGTTATTGTTTGCCCGAGAATTTTGAAGATTGC 540
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1252 AAAACTCTTCTTATTCCCATCGATCATGGCTATTGTTTGCCCGAGAATTTTGAAGATTGT 1311
Query 541 ACATTTGAGTGGCTCTACTGGCCGCAAGCGAAACTCCCGTTTTCTGCAGACAC-CATTGA 599
|||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 1312 ACATTTGAGTGGCTCTACTGGCCGCAAGCGAAACTCCCGTTTTCTGCAGATACTC-TTGA 1370
Query 600 CTACATAAACTCTCTAGACTCCGAACAAGACATTGCGCTTCTGCAACTCCATGGCTGGAA 659
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1371 CTACATAAACTCGCTAGACTCCGAACAAGACATCGCGCTTCTGCAACTCCATGGCTGGAA 1430
Query 660 TGTTCCTGAAGCTGTCTCACGCACTCTACGTATCTCCACGATGCTGCTGAAGAAAGGCGT 719
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1431 TGTTCCTGAAGCTGTCTCACGCACGCTACGTATCTCCACGATGCTGCTGAAGAAAGGCGT 1490
Query 720 TGAGAGAAACCTGACGCCATATCAAATAGGAAGCGTAATGTGCAGAGAAACGGTGAACAA 779
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1491 TGAGAGAAACCTGACGCCCTATCAAATAGGAAGCATAATGTGCAGAGAAACGGTGAACAA 1550
Query 780 AGACTCAGCGATTGAAGAGATAGTGAGAGAAGCTCATAACTCGGTGTTGCCTGCGTCAAG 839
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1551 AGACTCAGCGATTGAAGAGATAGTGAGAGAAGCTCATAACTCGGTGTTACCTGCGTCTAG 1610
Query 840 CGAGGCTACGTTTCTTGAAGCAGTATCTGTGGCCATGGATCGTCGTCTGGACGAGCTAAC 899
|||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 1611 TGAGGCTACGTTTCTTGAAGCTGTCTCTGTAGCCATGGATCGTCGTCTGGACGAGCTAAC 1670
Query 900 TAAGTAA 906
|||||||
Sbjct 1671 TAAGTAA 1677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40791521190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5