BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64480.1
Length=645
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314992 jgi|Araly1|314992|fgenesh1_pm.C_scaffold_2000025 1026 0.0
> Ahg314992 jgi|Araly1|314992|fgenesh1_pm.C_scaffold_2000025
Length=639
Score = 1026 bits (555), Expect = 0.0
Identities = 617/646 (96%), Gaps = 8/646 (1%)
Strand=Plus/Plus
Query 1 ATGTTGGCATTCGTGAAATGCTTCTCGTTGAAGCGAGCAAAGCATCCTCGTGGATATGAG 60
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1 ATGTTGGCATTCGTGAAATGCTTCTCGTTGAAGCGAACAAAACATCCTCGTGGATATGAG 60
Query 61 GATCCTCATGTTCTTGCATCCGAAACTCCCTTCACCGTGAATGAGATTGAGGCTTTACAC 120
|||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 61 GATCCTCATGTTCTTGCATCCGAAACTCCCTTTACAGTGAATGAGATAGAGGCTTTACAT 120
Query 121 GATTTAT-TCAAGAAGCTAAGTACATCTATTATCAATGATGGTCTAATCCATAAGGAAGA 179
||||||| | ||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 121 GATTTATAT-AAGAAGCTAAGTACATCCATTATCGATGATGGTCTAATCCATAAGGAAGA 179
Query 180 GTTTCTTCTGGCTTTGTTCAGAAACGGCAGTATGCAAAATCTATTTGCGGACAGGGTGTT 239
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 180 GTTTCTTCTGGCTTTGTTCAGAAACAGCAGTATGCAAAATCTGTTTGCGGACAGGGTGTT 239
Query 240 TTATATGTTTGATAGGAAACGCAACGGTGTGATTGAGTTTGGAGAATTTGTTCGTTCCCT 299
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 240 TTATATGTTTGATAGGAAACGCAATGGTGTGATTGAGTTTGGAGAATTTGTTCGTTCACT 299
Query 300 TAGCATATTCCATCCATACACTCCCGAACATGAAAAATCTGCATTTATGTTCAAGCTTTT 359
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TAGCATCTTCCATCCATACACTCCCGAACATGAAAAATCTGCATTTATGTTCAAGCTTTT 359
Query 360 TGACCTCCATGGAACCGGCTTCATCGAGCCCCATGAGCTGAAGAAGATGGTTGGCGCACT 419
|||||||||||||||||| |||||||||||||||||| |||| |||| ||||||||
Sbjct 360 TGACCTCCATGGAACCGGGTTCATCGAGCCCCATGAG---AAGA---TGGTGGGCGCACT 413
Query 420 ACTTGGTGAAACAGACTTAGAACTCTCGGAAGAATCTATTGAAGCTATCGTGGAACAGAC 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 ACTAGGTGAAACAGACTTAGAACTCTCGGAAGAATCTATTGAAGCTATCGTGGAACAGAC 473
Query 480 GATGCTCGAGGTTGATACAAACAAAGATGGGAAGATTGATGAAGAAGAGTGGAAAGAGCT 539
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 474 AATGCTCGAGGTTGATACAAACAAAGATGGGAAGATTGATGAAGAAGAGTGGAGAGAGCT 533
Query 540 CGTTGCTAAGAATCCTTCAATCCTCAAGAACATGACTCTGCCTTACCTCAAGGAAGTGAC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 CGTTGCTAAGAATCCTTCAATCCTCAAGAACATGACTCTGCCTTACCTCAAGGAAGTGAC 593
Query 600 TTTAGCATTTCCAAGCTTTGTACTCGACTCTGAAGTTGAAGACTAG 645
||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 594 ATTAGCATTTCCAAGCTTTGTACTCGACTCTGAAGTAGATGACTAG 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23636208540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5