BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64510.1
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474896 jgi|Araly1|474896|fgenesh2_kg.2__26__AT1G64510.1 1085 0.0
> Ahg474896 jgi|Araly1|474896|fgenesh2_kg.2__26__AT1G64510.1
Length=777
Score = 1085 bits (587), Expect = 0.0
Identities = 707/760 (93%), Gaps = 27/760 (4%)
Strand=Plus/Plus
Query 52 TGGCGTCTTCGCTGTGTGTATCAAATTCCACAATTTGCCCTCTGCCTAATGTATCTTCGC 111
||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 7 TGGCGTCTTCGCTATGTCTATCGAATTCCACAATTTGCCCTCTGCCTAATGTATCTTCGC 66
Query 112 AGCCGCTGCTATCATTCTCCCACTCTCTCAGGCCATTCATTTCCAAGTCGAAACCTATGT 171
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 67 AGCCGCTGCTCTCATTCTCCCACTCTCTCAGGCCATTCATTTCCAAGTCGAAACCTGTTT 126
Query 172 GTGCCTCG--------ATA-CAGAAGAGAGATGGCTCTCAATTTGTGGTGAAATCTCAGG 222
|||||||| | | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 127 GTGCCTCGCTACAACAACAGCAGAAGAGAGATGGCTCTCAATTTGTGGTAAAATCTCAGG 186
Query 223 CTCTTGACTTCTCTGGAACTTTCTTTGAAGGTGGATTCGGGTCGGATGATGACCCGACTT 282
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 CTCTTGATTTCTCCGGAACTTTCTTTGAAGGTGGATTCGGGTCGGATGATGACCCGACTT 246
Query 283 CTCCTTCCGGGTCGGGAGTCTCAACTGCCCTTGAAGACAAACCGGAACCTCAGTGCCCAC 342
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 247 CTCCTCCCGGGTCGGGAGTCTCAACTGCCCTTGAGGACAAACCGGAACCTCAGTGCCCAC 306
Query 343 CTGGGCTCAGGCAGTACGAAACAATGGCGGTTTTGAGACCAGACATGTCTGAAGATGAAC 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 CTGGGCTCAGGCAGTACGAAACAATGGCGGTTTTGAGACCAGACATGTCTGAAGATGAAC 366
Query 403 GGCTTGGTCTTACCCAGAAATACGAAGAGTTGCTTGTGGCAGGAGGTGGAATGTATGTGG 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 GGCTTGGTCTTACCCAGAAATACGAAGAGTTGCTTGTGGCAGGAGGTGGAATGTATGTGG 426
Query 463 AAGTGTTTAACAGAGGAGTGATTCCGTTGGCTTACAGCATAAGAAAGAAGAACAAAGCTG 522
||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 427 AAGTGTTCAACAGAGGAGTGATTCCATTAGCTTACAGCATTAGAAAGAAGAACAAAGCTG 486
Query 523 GAGAAACCAACACTTACTTGGATGGAATCTACCTTCTCTTCACTTACTTCACCAAACCCG 582
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 GAGAAACCAACACTTACCTGGATGGAATCTACCTTCTCTTCACTTACTTCACCAAACCCG 546
Query 583 AATCAATAGTTCCACTCGAGACCGTTCTCACTGCCGACGATGACATTATCCGATCATCTT 642
| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 AGTCAATAACTCCGCTCGAGACCGTTCTCACTGCCGACGATGACATTATCCGATCATCTT 606
Query 643 CCTTCAAGATAAAGAAGAGGAAGTACAACTGAAGA--CCATGAACATTGTGTATGTGAGA 700
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 607 CCTTCAAGATAAAGAAGAGGAAGTACAACTGAAGAGACCATGAACATTGTGTATGTG--- 663
Query 701 AAAATGTCAGATtctttttttgtttctttgtaagaacaaaagtaaatctatcttt-tttg 759
|| | ||| |||| ||||||||| |||||||||||||||||||||||| ||||
Sbjct 664 ----TG--A-ATT-TTTTG--GTTTCTTTGGAAGAACAAAAGTAAATCTATCTTTATTTG 713
Query 760 tatctttttttgtGCATTGCTCTGCTTTCTTA-TGTAACT 798
|||||||||| |||||||||||| ||||| | |||||||
Sbjct 714 GATCTTTTTTTATGCATTGCTCTGTTTTCT-ACTGTAACT 752
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31985127363
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5