BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64520.1
Length=1079
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474895 jgi|Araly1|474895|fgenesh2_kg.2__25__AT1G64520.1 1740 0.0
> Ahg474895 jgi|Araly1|474895|fgenesh2_kg.2__25__AT1G64520.1
Length=1081
Score = 1740 bits (942), Expect = 0.0
Identities = 1038/1084 (96%), Gaps = 8/1084 (1%)
Strand=Plus/Plus
Query 1 AAGCCAGTTCTCGGAGCAATCAAATCTATAAGAAAAGAATCGTCGCCGGTGAAGAGAAA- 59
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 AAGCCAGTTCTCGGAGCAATCAAATCTATAAGAAAGGAATCGTCGCCGGTGAAGAGAAAG 60
Query 60 A-A-ACCATAGAAGCGATGGATCCGCAGCTAACTGAAGTTTCACAGCAGTTCGAGAGATT 117
| | | | | |||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 61 AGAGAGC-T-CAAGCGATGGATCCGCAGCTAACGGAAGTTTCACAGCAGTTCGAGAGGTT 118
Query 118 CAAGGCGGCGTTTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAA 177
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 119 CAAGGCGGCGTTTGCGAGGAAGGATTACAATAGCTGTAGTGATCTGTTGTCTCAGCTTAA 178
Query 178 GGTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCTAATGCAGC 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GGTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCTAATGCAGC 238
Query 238 CAAGGAATTGACTATTGCAAGGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAAC 297
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 239 CAAGGAATTGACTATTGCTAGGGACATTTATGAGCATGCTGTTGTTCTAAGCGTAAAAAC 298
Query 298 CGAGGATCAAGATGCTTTTGAGAGAGATTTCTTCCAGCTGAAACCTTACTATGTGGATGC 357
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 299 CGAGGATCAAGATGCTTTTGAGAGAGATTTCTTCCAGTTGAAACCTTACTATGTGGATGC 358
Query 358 CAGGAACCGTATT-CCTCAGTCTCCACAGGAGAATCTTATCCTGGGTCTTAACCTTCTGA 416
||||||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 359 CAGGAACCGTATTCCCTCA-TCCCCACAGGAGAATCTTATCCTGGGTCTCAACCTTCTGA 417
Query 417 GGCTGCTGGTACAAAATAGAATTGCTGAATTCCACACCGAGCTTGAATTACTTTCATCAG 476
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 418 GGCTGCTTGTACAAAATAGAATTGCTGAATTCCACACCGAGCTTGAATTACTTTCGTCAG 477
Query 477 CTACACTAGAGGATCCTTGCATCAAGCATGCAGTAGAGCTTGAGCAATCCTTCATGGAGG 536
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 478 CTACACTGGAGGATCCTTGCATCAAGCATGCAGTAGAGCTTGAGCAGTCCTTCATGGAGG 537
Query 537 GTGCCTATAACCGTGTGTTGAGTGCTAGACAGACCGCGCCTGATGCAACTTACGTCTATT 596
|||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 538 GTGCCTATAATCGTGTGTTGAGTGCTAGACAGACTGCGCCTGATGCAACTTATGTCTATT 597
Query 597 TCATGGATCTCTTGGCAAAGACCATAAGAGATGAAATAGCTGGATGCAGCGAGAAAGCTT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TCATGGATCTCTTGGCAAAGACCATAAGAGATGAAATAGCTGGATGCAGCGAGAAAGCTT 657
Query 657 ATGATTATGTCTCTATCAGCGATGCCCGGCAGATGTTGTTGTTCTCTTCTGATCAAGAAC 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ATGATTATGTCTCTATCAGCGATGCCCGGCAGATGTTGTTGTTCTCTTCTGATCAAGAAC 717
Query 717 TCTTAACCTATGTCACAGATGAGCATCCTGAGTGGGAAGTGAAGGAAGGGTTTGTTGTCT 776
||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 718 TCTTAACCTATGTCAAAGAGGAGCACCCTGAGTGGGAAGTGAAGGAAGGGTTTGTTGTCT 777
Query 777 TCCAGAAAGCCAAAGAAACTGCACCGTGCAAAGAGATTCCGTCTCTGCAACTCATCAACC 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TCCAGAAAGCCAAAGAAACTGCACCGTGCAAAGAGATTCCGTCTCTGCAACTCATCAACC 837
Query 837 AGACTCTAAGCTACGCCAGAGAGCTGGAGCGTATCGTGTAAGATTCGACTTTTCTCACTG 896
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 838 AGACTCTAAGCTACGCCAGAGAGCTGGAGCGTATCGTGTAAGATCCGACTTTCCTCACTG 897
Query 897 CTTGTCTCTTCTCTTCTG-TTATGTTCCTGGAAATCTCTGGGTCAGAAAACTTTGTTATC 955
||| |||||||||||| ||||||||||||||||||| ||||| ||||| |||||||
Sbjct 898 CTTTTCTCTTCTCTTCCAATTATGTTCCTGGAAATCTCCGGGTCCTAAAACGTTGTTATA 957
Query 956 ATGTAATGACCGATATTGAGCGACTCAGTATTTTCTCCGGGTCAATGAGACTTTGTTGTG 1015
|||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| |
Sbjct 958 ATGTAATGACTGATATTGAGGGACTCAGTATTTTCTCCGGGTCAATTAGACTTTGTTGCG 1017
Query 1016 ATATCAATCTGTTTTTCCATATCCTTTTACGTTATATTCTATTGTTTAGTGTTCACTCGT 1075
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1018 ATATCAATCTGTTCTTCCATATCATTTTACGTTATATTCTATTGTTTAGTGTTCACTCGT 1077
Query 1076 TTTC 1079
||||
Sbjct 1078 TTTC 1081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40181554518
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5