BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64580.1
Length=1942
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474889 jgi|Araly1|474889|fgenesh2_kg.2__19__AT1G64580.1 2338 0.0
> Ahg474889 jgi|Araly1|474889|fgenesh2_kg.2__19__AT1G64580.1
Length=3182
Score = 2338 bits (1266), Expect = 0.0
Identities = 1483/1584 (94%), Gaps = 29/1584 (2%)
Strand=Plus/Plus
Query 90 GATTAATTCCGATAGCGTTTTCGTCATCGGTGAAGGGGTTTGTTCGTCGGCATTAT-CTT 148
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||
Sbjct 1609 GATTAATTCCGATAGCGTCTTCGTCATCGGTGAAGGGGTTTGTTCGTCGGCATT-TGCTT 1667
Query 149 CTTCTGGAGAGAGGTAACAATCCCGAGACT---TCTCTCT-C--T-CGA-TC-T--TTTT 197
||||||||||||||||||||||||||| || ||| | | | | ||| || | | |
Sbjct 1668 CTTCTGGAGAGAGGTAACAATCCCGAGTCTCGATCTTTTTCCGGTGCGAGTCATCATCAT 1727
Query 198 C--CGGTGCGAGTCATCATCATCATTACAGAGAGAGATTGAGAAATGAGCTTCACTGTAT 255
| | | | | |||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1728 CATC-AT-C-A-TCATCATCATCATTACCGAGAGAGATTGAGAAGTGAGCTTCACTGTAT 1783
Query 256 AAAGTTTGACGATGCATTTAGTTTGTTCTGTGAGATGCTTCAGTCTCGTCCCATTCCTAG 315
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1784 AAAGTTTGATGATGCATTTGGTTTGTTCTGTGAGATGCTTCAGTCTCGTCCCATTCCTAG 1843
Query 316 CATTGTTGATTTCACTAGAGTTTTGACTGTCATTGCTAAGATGAACAAGTTTGACATTGT 375
|||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1844 CATTGTTGATTTCACTCGAGTTTTGAGTGCCATTGCTAAGATGAACAAGTTTGACATTGT 1903
Query 376 CATCTATCTCTACCACAAGATGGAGAATTTGGGAATCTCACATGATCTCTATAGCTTCAC 435
||||||||||| ||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 1904 CATCTATCTCTTCCACAAGATGGAGAATTTGGGCATCTCACACGATCTTTATAGCTTCAC 1963
Query 436 CATTCTGATTCATTGTTTCTGCCGATGCTCACGACTCTCTCTTGCTCTTGCTCTTCTTGG 495
|||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1964 CATTTTGATTCATTGTTTCTGCCGATGCTCTCGATTCTCTCTTGCTCTTGCTCTTCTTGG 2023
Query 496 AAAAATGATGAAACTTGGGTTTC-GTCCCAGCATTGTCACTCTTGGCTCTCTCCTCAACG 554
||| ||||||||||||||||||| | |||||||| ||||| |||||||||||||||||||
Sbjct 2024 AAAGATGATGAAACTTGGGTTTCAG-CCCAGCATCGTCACGCTTGGCTCTCTCCTCAACG 2082
Query 555 GTTTCTGTCAAGGGAATAGATTTCAGGAGGCTGTTTCTCTCGTTGATTCAATGGATGG-A 613
|||||||||||||||||||||||||||||||||||||||| || |||||||||| || |
Sbjct 2083 GTTTCTGTCAAGGGAATAGATTTCAGGAGGCTGTTTCTCTTGTCGATTCAATGG-CGGAA 2141
Query 614 TTCGGATTCGTTCCTAATGTTGTCATCTACAACACTGTCATTAACGGTCTTTGCAAGAAC 673
|| ||||| | |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2142 TTGGGATTGGAACCTAATGTTGTCATCTACAACACTGTCATTAATGGTCTTTGCAAGAAC 2201
Query 674 AGAGATTTGAATAACGCACTCGAGGTTTTCTACT-GTATGGAGAAGAAAGGAATCAG-AG 731
||||||||||||||||| |||||| |||| || | | |||||||||||||||||| | ||
Sbjct 2202 AGAGATTTGAATAACGCCCTCGAGATTTTTTA-TGGGATGGAGAAGAAAGGAATC-GTAG 2259
Query 732 CTGATGCTGTTACTTACAACACTCTCATAAGTGGTCTTTCTAACTCTGGTAGATGGACCG 791
| ||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||
Sbjct 2260 CGGATGCTGTTACTTACAACACTCTTATAAGTGGCCTTTGTAACTCTGGTAGATGGACCG 2319
Query 792 ACGCTGCTCGACTTCTCAGAGATATGGTGAAGAGGAAAATCGATCCTAATGTGATATTTT 851
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2320 ACGCAGCTCGACTTCTCAGAGATATGGTGAAGAGGAAAATCGATCCTAATGTGATATTTT 2379
Query 852 TCACTGCGCTGATCGATACGTTTGTGAAAGAGGGTAACCTTTTAGAGGCTAG-AAACTTG 910
||||||||||||||||||| |||||||||||||| ||||||||||||||| | |||||||
Sbjct 2380 TCACTGCGCTGATCGATACTTTTGTGAAAGAGGGCAACCTTTTAGAGGCT-GAAAACTTG 2438
Query 911 TACAAGGAGATGATCCGAAGATCTGTAGTTCCTAATGTTTTCACTTACAATTCACTCATC 970
||||||||||||||| ||||||||||| ||||||| || ||||||||||||||||||||
Sbjct 2439 TACAAGGAGATGATCAGAAGATCTGTACATCCTAATATTCTCACTTACAATTCACTCATC 2498
Query 971 AATGGGTTTTGCATTCATGGTTGCTTAGGTGATGCCAAATATATGTTTGATCTGATGGTA 1030
||||||||||||||||| ||| |||||||||| |||||| ||||||||||||||||||||
Sbjct 2499 AATGGGTTTTGCATTCAAGGTCGCTTAGGTGACGCCAAACATATGTTTGATCTGATGGTA 2558
Query 1031 AGCAAGGGTTGCTTCCCTGATGTTGTGACCTATAACACTCTCATAACAGGATTTTGTAAG 1090
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2559 AGCAAGGGTTGCTTCCCGGATGTTGTGACCTATAACACTCTCATAACAGGATTTTGTAAG 2618
Query 1091 TCTAAGAGGGTAGAAGATGGGATGAAACTCTTTTGTGAGATGACTTATCAAGGATTGGTT 1150
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 2619 TCTAAGAGGGTAGAAGATGGTATGAAACTCTTTTGTGAGATGACTCATCAAGGATTGGTT 2678
Query 1151 GGCGATGCATTCACTTACAACACGCTTATCCACGGTTATTGTCAAGCGGGCAAACTTAAT 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2679 GGCGATGCATTCACTTACAACACGCTTATCCACGGTTATTGTCAAGCGGGCAAACTTAAT 2738
Query 1211 GTTGCACAAAAGGTTTTCAATAGGATGGTTGATTGTGGTGTGTCTCCTGATATTGTTACC 1270
||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 2739 GTTGCCCAAAAGGTTTTCAATCGGATGGTTGATTGTGGTGTGCCTCCTGATATTGTTACC 2798
Query 1271 TACAACATCTTGTTAGATTGTCTATGTAATAACGGGAAGATAGAGAAAGCATTAGTGATG 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2799 TACAACATCTTGTTAGATTGTCTATGTAATAACGGGAAGATAGAGAAAGCATTGGTGATG 2858
Query 1331 GTAGAGGATCTGCAAAAGAGTGAAATGGATGTTGATATTATTACATATAATATCATCATT 1390
|||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 2859 GTAGAGGATCTGCAGAAGAATCAAATGGATGTTGATATTATTACATATAATATCATCATT 2918
Query 1391 CAAGGGTTGTGTAGAACTGATAAGTTGAAAGAGGCTTGGTGTTTATTTCGTAGCCTCACT 1450
|||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2919 CAAGGGATGTGTAGAAATGATAAGGTGAAAGAGGCTTGGTGTTTATTTCGTAGCCTCACT 2978
Query 1451 CGCAAAGGAGTGAAGCCTGATGCTATAGCATACATTACAATGATATCAGGCTTGTGCAGG 1510
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||
Sbjct 2979 CGCAAAGGAGTGAAGCTTGATGCTATAGCATACATTACAATGATATCGGGCTTGTGTAGG 3038
Query 1511 AAAGGCCTACAGCGTGAAGCGGACAAGCTGTGTAGAAGAATGAAAGAAGATGGGTTTATG 1570
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3039 AATGGCCTACGGCGTGAAGCGGACAAGCTGTGTAGAAGAATGAAAGAAGATGGGTTTATG 3098
Query 1571 CCAAGTGAACGCATATATGATGAGACACTTAGAGATCACTACACAAGCTTATCAGCTGAA 1630
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3099 CCAAGTGAACGCATATATGATGAGACGCTTAGAGATCACTACACAAGCTTATCAGCTGAA 3158
Query 1631 CTCATCAAAGCAGCTCATGAGTAA 1654
||||||||||||| ||||||||||
Sbjct 3159 CTCATCAAAGCAGTTCATGAGTAA 3182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72980909420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5