BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64590.1
Length=1373
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474887 jgi|Araly1|474887|fgenesh2_kg.2__17__AT1G64590.1 1740 0.0
> Ahg474887 jgi|Araly1|474887|fgenesh2_kg.2__17__AT1G64590.1
Length=1247
Score = 1740 bits (942), Expect = 0.0
Identities = 1059/1116 (95%), Gaps = 5/1116 (0%)
Strand=Plus/Plus
Query 13 CTCAACTGCTCTCCCATAACCGAAACCGAGAG--A-AAATATAGAAAAAGATGATTGAGA 69
|||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 1 CTCAACTGCTCTCCCATAACCGAAACCGAGAGAAAGAAAAATAGAAAAAGATGATTGAGA 60
Query 70 CGGTTAAACACCTGATCGGCTCCGGTGGTCCCAGCGGATTCGGGTCAAGATCCACCGCCG 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGGTTAAACACCTGATCGGCTCCGGTGGTCCCAGCGGATTCGGGTCAAGATCCACCGCCG 120
Query 130 ATCATGTCACTTGTAATTCTGATCTCCGTTCTCTAACTGCCATCATCACTGGCGCGACGT 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 ATCATGTCACTTGTAATTCTGATCTCCGTTCTCTAACTGCCATCATCACTGGCGCTACGT 180
Query 190 CGGGGATAGGAGCTGAGACGGCGCGTGTTCTTGCTAAGCGTGGCGCAAGACTTGTGCTTC 249
||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 181 CGGGGATAGGAGCGGAGACAGCGCGTGTTCTTGCTAAGCGTGGAGCTCGACTTGTGCTTC 240
Query 250 CGGCTAGAAGCGTCAAAACCGCCGAGGAAACAAAGGCTCGTATACTGTCGGAGTTTCCTG 309
||||| | |||||||||||||||||||||||||| |||||||| ||| ||||||||||||
Sbjct 241 CGGCTCGGAGCGTCAAAACCGCCGAGGAAACAAAAGCTCGTATCCTGGCGGAGTTTCCTG 300
Query 310 ATGCGGAGATCATCGTTATGCATCTTGATCTCAGCTCACTTACCTCTGTTCGTCGATTCG 369
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 301 ATGCGGAGATCATCGTTATGCATCTTGATCTCAGCTCACTTACCTCTGTCCGCCGATTCG 360
Query 370 TGGACGATTTCGAATCTCTCAATCTCCCACTCAACATCCTCATAAACAATGCTGGGAAAT 429
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 TGGACGATTTCGAATCTCTCAATCTCCCACTCAACATCCTCATAAACAATGCCGGGAAAT 420
Query 430 ATGCGCATAAGCATGCCCTCTCTGAGGACGGTGTGGAGATGACCTTCGCTACTAATTATC 489
| ||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||
Sbjct 421 ACGCGCATAAGCATGCCATCTCTGAGGACGGTGTGGAGATGACCTTTGCCACTAATTATC 480
Query 490 TCGGCCATTTTCTGCTGACTAAACTGCTGTTAAAGAAGATGATTGAAACGGCGGCACAAA 549
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCGGCCATTTTCTGCTGACGAAACTGCTGTTAAAGAAGATGATTGAAACGGCGGCACAAA 540
Query 550 CCGGCGTGCAAGGCCGTATCGTCAACGTCACGTCCGTCGTCCATAGCTGGTTTTCCGGTG 609
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 541 CCGGCGTGCAAGGCCGTATAGTCAACGTCACGTCCGTCATCCATAGCTGGTTTTCCGGTG 600
Query 610 ATATGTTGCAATATCTCGCCGATATCTCACGAAACAATAGAAATTACGACGCGACTCGAG 669
|||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 601 ATATGTTGCAATATCTCGCCGATATCTCGCGGAACAATAGAAATTACGATGCGACTCGAG 660
Query 670 CCTACGCTCTCTCCAAGCTCGCCAACGTGCTCCACACTGTTGAGCTATCACGGCTTCTCC 729
|||||||||||||||||||||||||||||||||||||| ||||||| || ||| ||||||
Sbjct 661 CCTACGCTCTCTCCAAGCTCGCCAACGTGCTCCACACTCTTGAGCTTTCCCGGATTCTCC 720
Query 730 ATAAAATGGATGCGAATGTGACGGCCAATTGTGTTCATCCTGGTATCGTGAAAACCCGTC 789
||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 721 ATAAAATGGATGCTAATGTGACGGCCAATTGTGTCCATCCTGGTATCGTGAGAACCCGTC 780
Query 790 TCACAAGAGATCGAGAAGGCGTCGTCACTGATTTAGTGTTTTTCTTGACATCCAAGCTAT 849
|||||||||||||||||||| ||||||| || ||||||||||||||||| ||||||||||
Sbjct 781 TCACAAGAGATCGAGAAGGCATCGTCACAGACTTAGTGTTTTTCTTGACCTCCAAGCTAT 840
Query 850 TGAAGTCTGTTCCTCAGGCAGCAGCTACGACATGTTACGTGGCAACAAGTCCAAGATTGA 909
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 841 TGAAGTCTGTTCCTCAGGCAGCAGCTACGACATGTTACGTGGCAACAAGTCCGAGATTGA 900
Query 910 GGAACGTGTGTGGCAAGTACTTCTCCGACTGCAACGAAGCTAGGTCATCTAAATCCGGGT 969
||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||
Sbjct 901 GGAACGTGTGTGGCAAGTACTTCTCAGACTGCAACGAAGCTAGGACATCTAAATTCGGGT 960
Query 970 CATGCAATCTCAAAGCTCAGAGACTCTGGACTGCTTCTGACTTGTTGGTTTCTCCACCTA 1029
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 961 CTTGCAATCTTAAAGCTCAGAGACTCTGGACTGCTTCTGACTTGTTGGTTTCTCCACCCA 1020
Query 1030 ATTCCACTACCAATCTTTCTCATACCTCCTTTTAACCAACAAACCATCCTAGCTATTTTC 1089
|||||||| || |||||||||| || ||||||||| |||||| ||||||||||||||| |
Sbjct 1021 ATTCCACTCCCGATCTTTCTCAAACGTCCTTTTAATCAACAA-CCATCCTAGCTATTT-C 1078
Query 1090 TACGTGTAAATCTTAAGCCCtatatatagtaatata 1125
|||||||| ||| ||||||| ||||||||||||||
Sbjct 1079 TACGTGTATATCCCAAGCCCTCTATATAGTAATATA 1114
Score = 99.0 bits (53), Expect = 8e-20
Identities = 56/57 (98%), Gaps = 1/57 (2%)
Strand=Plus/Plus
Query 1202 gtgtgCATAT-AGCAAGCCTCCCTATATTTAATATGTGGTTATGGTTTGACATTATT 1257
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GTGTGCATATAAGCAAGCCTCCCTATATTTAATATGTGGTTATGGTTTGACATTATT 1192
Score = 99.0 bits (53), Expect = 8e-20
Identities = 55/56 (98%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 1290 TTGTAGGGTTTTGTAATCCTAGCTAGCTAGGTCCTTGTTATGTAATATATACATAT 1345
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1192 TTGTAGGGTTTTGTAATCCTAGCTAGCTAGGTCCTTGTTATGTAATATATATATAT 1247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51389692116
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5