BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64600.1
Length=1734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474886 jgi|Araly1|474886|fgenesh2_kg.2__16__AT1G64600.1 2654 0.0
> Ahg474886 jgi|Araly1|474886|fgenesh2_kg.2__16__AT1G64600.1
Length=1649
Score = 2654 bits (1437), Expect = 0.0
Identities = 1577/1644 (96%), Gaps = 12/1644 (1%)
Strand=Plus/Plus
Query 1 ATTTCAGTTCAAGCTCCGGCTGAAAATGGCGAATGCCCAGAAAGTCTTCACTGTAGAAAC 60
|||| || ||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1 ATTTGAGATCAAGCTCCGGCTGAAAATGGCGAATGCCCAGAAAGTCTTCACCGTCGAAAC 60
Query 61 CCTAAGATCTGCAT-CGAAACAGTGTCTCCGCTGCCTAGTCGTCCCCGTCCGTCTCCGCC 119
|||||| ||||| | | || |||| |||||| ||||||||||||||||||||||||||||
Sbjct 61 CCTAAGGTCTGC-TGCTAAGCAGTCTCTCCGTTGCCTAGTCGTCCCCGTCCGTCTCCGCC 119
Query 120 GCGCTATTAAGAAATATCTCCGCGAGGAAGATGATCCTCACATTAGGAAGAAGGTGCGTC 179
|||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 120 GCGCGATTAAGAAATATCTTCGCGAGGAAGATGATCCTCACATAAGGAAGAAGGTGCGTC 179
Query 180 AGTTATCGGAATCATTCCAAGAGATCAAGGACACCAATCTTCAGTTACCTGAAACCACGG 239
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 180 AGTTATCGGAATCATTCCAAGAGATCAAGGACACGAATCTTCAGTTACCTGAAACCACGG 239
Query 240 CCAAGAGTCTGGCTGATTCTATGAACTCGCTAGAGACCAAACGATGGAAGATACAAACCG 299
||||||||||||||||||||||||||||| | |||||||| |||||||||||||| ||||
Sbjct 240 CCAAGAGTCTGGCTGATTCTATGAACTCGTTGGAGACCAAGCGATGGAAGATACAGACCG 299
Query 300 TTTATGGAGATAGCGGTCTCCAATACAGAGACGGTGAGACTGCTGCTTACATTGCTTCTC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTTATGGAGATAGCGGTCTCCAATACAGAGACGGTGAGACTGCTGCTTACATTGCTTCTC 359
Query 360 GTATGCCTGCCGTCTTTTCCGTCTGCTATAGAGTCCTCATCGAGATTCGTCGAAGAGTAC 419
||||||| |||||||| ||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 360 GTATGCCCGCCGTCTTCTCCGTCTGCTACAGAGTCCTCATCGAGATTCGTAGAAGAGTAC 419
Query 420 CAGGTTTTACGCCTACAAGAGTGCTGGATTTTGGTGCTGGCACTGGTTCAGGTTTCTGGG 479
| |||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 420 CGGGTTTTGCGCCTACAAGAGTGCTGGATTTTGGTGCTGGCACTGGCTCGGGTTTCTGGG 479
Query 480 CGGTTAAAGAGGTTTGGCCTAAGTCTGTGGAGAAAGTAAATATAGTGGAACCATCTCAAT 539
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CGGTTAAAGAGGTTTGGCCAAAGTCTGTGGAGAAAGTAAATATAGTGGAACCATCTCAAT 539
Query 540 CAATGCAGCGTGCAGGACGTAACTTAATCCAGGGCCTTAAGGATTTGCCTCTGATCCATG 599
|||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 540 CAATGCAGCGTGCAGGGCGTAACTTAATTCAGGGCCTCAAGGATTTGCCTCTCATCCATG 599
Query 600 GGTATACTAGCCTGCTAGCTCTTAATAAAGAGATCAACAAAAAGTCTGAGAGGAAACATG 659
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 GGTATACTAGCCTGCTAGCTCTTAGTAAAGAGATCAACAAAAAGTCTGAGAGGAAACATG 659
Query 660 ATCTTGTCATCGCTTCCTATGTGTTAGGGGAGATACCATCTCTGAAAGACAGGATTACTG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ATCTTGTCATCGCTTCCTATGTGTTAGGGGAGATACCATCTCTGAAAGACAGGATTACTG 719
Query 720 TGGTTCGCCAGCTCTGGGACCTTACAGATGATCTCTTGGTTTTGGTTGAACCAGGAACGC 779
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 720 TGGTTCGCCAGCTCTGGGACCTTACCGATGATCTCTTGGTTTTGGTTGAACCAGGAACGC 779
Query 780 CACACGGTGCTAATATTATATCTCAGATGCGGTCCCATATACTGTGGATGGAGAAGAGGA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CACACGGTGCTAATATTATATCTCAGATGCGGTCCCATATACTGTGGATGGAGAAGAGGA 839
Query 840 AACTGCGTAAACTGGAAAAGAAAATGAAGAAAGATGGAAAGGAGGTGCTCGATCTCAAAT 899
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 840 AACTGCGTAAACTGGAAAAGAAAATGAAGAAAGATGGAAAGGACGTACTCGATCTCAAAT 899
Query 900 CTGGTGCGCATATTGTTGCTCCATGCCCTCATGATGGAAAGTGTCCGCTGGAAAACACTG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CTGGTGCGCATATTGTTGCTCCATGCCCTCATGATGGAAAGTGTCCGCTGGAAAACACTG 959
Query 960 GAAAGTACTGTCATTTTGTTCAGCGGTTGCAGAGAACTTCGTCTCAGCGTTCCTACAAGC 1019
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 960 GAAAGTACTGTCATTTTGTTCAGCGGTTGCAGAGAACTTCATCTCAGCGTTCCTACAAGC 1019
Query 1020 GTACAAAGGGTGTCCCCCTACGTGGGTTTGAGGATGAGAAGTTTTGTTTTGTGGCTTTCA 1079
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GTACAAAAGGTGTTCCCCTACGTGGGTTTGAGGATGAGAAGTTTTGTTTTGTGGCTTTCA 1079
Query 1080 GGAGAGGTCAGCGCCCACGGGAGTTGTGGCCTCTTGACGGTATGAAGTTGGAGACATTGA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GGAGAGGTCAGCGCCCACGGGAGTTGTGGCCTCTTGACGGTATGAAGTTGGAGACATTGA 1139
Query 1140 AGGAGAGACGCGCAAATAAGAAACCCGAGGATCTTGAGATTGATTATGAGGACTTTATCA 1199
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1140 AGGAGAGACGCGCAAATAAGAAACCCGAGGATCTCGAGATTGATTATGAGGACTTTATCA 1199
Query 1200 AATCACAGGTGGTTGAAGTGCCTTACATTGATCCAAGAGCTTATGACTCCGACACCATGG 1259
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1200 AATCACAGGTGGTTGAAGTGCCTTACATTGATCCAAGATCATATGACTCCGACACCATGG 1259
Query 1260 ATGA-GAACGAGGAGGAACAAGAAGACGGTGGAGGTACTGATGAGGATGAAGAAGACAAG 1318
|||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1260 ATGATGAG-GAGGAGGAACAAGAAGACGGTGAAGGTACTGATGAGGATGAAGAAGACAAG 1318
Query 1319 ATTGAAGAGGAAAT--A-GA--A-GAGGAGAGTGAGAGGGCGAGTGTGGGAGGCGGATGG 1372
|||||||| ||||| | || | ||||||||||||||||||||||||||||||||||||
Sbjct 1319 ATTGAAGAAGAAATTGAAGAGGAAGAGGAGAGTGAGAGGGCGAGTGTGGGAGGCGGATGG 1378
Query 1373 GGAAGAATCATATTCCCTCCATTCCGCAAAGGGAAACAAGTGACGTTGGATATGTGTGTG 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GGAAGAATCATATTCCCTCCATTCCGCAAAGGGAAACAAGTGACGTTGGATATGTGTGTG 1438
Query 1433 CCAACCAAAGAAGATGGGTCCGAGGGAGCCTTTGAAAGGAGAGTGATAACAAAAAGCAAA 1492
||||||||||| || ||||| |||||||| || ||||||||||||||||| ||||||||
Sbjct 1439 CCAACCAAAGAGGACGGGTCAGAGGGAGCATTCGAAAGGAGAGTGATAACTAAAAGCAAG 1498
Query 1493 AACCCGGATCTTCATTTGCAGGCCAAGAAATCCTTTTGGGGAGACTTATGGCCTCTCACG 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 AACCCGGATCTTCATTTGCAGGCCAAGAAATCCTTTTGGGGAGACTTATGGCCTCTCACG 1558
Query 1553 ACTCAACAAGAAAATGGCAAAAAGAAGCAAGTAGATGCTGAGTGGTGTCGCCCAGA-CGA 1611
||||||||||||| || |||| |||||||||||||||||||||||||||||||||| | |
Sbjct 1559 ACTCAACAAGAAAGTGTCAAAGAGAAGCAAGTAGATGCTGAGTGGTGTCGCCCAGATC-A 1617
Query 1612 AGACCAGAAATGGAGTGGTTGGCC 1635
||||||||||||| || |||||||
Sbjct 1618 AGACCAGAAATGGGGTAGTTGGCC 1641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65058138460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5