BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64610.1
Length=2428
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474884 jgi|Araly1|474884|fgenesh2_kg.2__14__AT1G64610.1 3025 0.0
> Ahg474884 jgi|Araly1|474884|fgenesh2_kg.2__14__AT1G64610.1
Length=2284
Score = 3025 bits (1638), Expect = 0.0
Identities = 1980/2141 (92%), Gaps = 39/2141 (2%)
Strand=Plus/Plus
Query 231 Cttttttt-AGAAAGATCACGCACGGACTCGATTCATCAACTATTGTGTTTGGTGAGACT 289
|||||||| |||||||||||| ||||||| |||||| |||| |||| ||||| |||||||
Sbjct 138 CTTTTTTTAAGAAAGATCACGGACGGACTTGATTCAACAACAATTGGGTTTGATGAGACT 197
Query 290 GAGAGTGTGTGATGGGTACTCCTGGTGATGAAGAAGATGAAGATCGCTTCTTTGATGCCC 349
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 198 CAGAGTGTGTGATGGGTACTCGTGGGGATGAAGAAGATGAAGATCGCTTCTTTGATGCCT 257
Query 350 CTGAAGTTGTTTCCGACGACTTTGGTTTACATCTCTGGACCAGTACTCCGGAGAGTGTTT 409
||||| | ||| ||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 258 CTGAA---GACTCCAACGACTTTGGTTTACATCTCTGGACCAATACTCCGGATAGTGTTT 314
Query 410 CCACTCGACGGCGTAAGTTTTTACAATCTATGGGCTTGAGTTTCAAAAAGACTGC--CAC 467
||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||
Sbjct 315 CCAGTCGACGGCGTAAGTTTTTACAATCTATGGGCTTTAGTTTCAAACAGACTGCAACAG 374
Query 468 A-GATGATGACTCTGAAGATGA-G--CTTGAACCATCCCATACTGACTCTAACGTTGTGT 523
| |||||||| ||||| ||||| | ||||||||||||||| |||| |||||| ||||||
Sbjct 375 ATGATGATGATTCTGAGGATGACGACCTTGAACCATCCCATTCTGATTCTAACCTTGTGT 434
Query 524 CTGAAGTTGTTAACGTCTCTTCTGGTGTGAAAGAGATTGATTTGTTGGTGAGGAATGAAT 583
|| ||||||||||| ||||||||| ||| | ||||||||||||||||||||||
Sbjct 435 CTCAAGTTGTTAACCTCTCTTCTGCTGT------G---GATTTGTTGGTGAGGAATGAAT 485
Query 584 CTACTACGTCCTCTGGATTCGATGTATCCTCTGTTTCATCATCA-GATACAGATGATCAG 642
| ||||||||||||||||| ||| |||||||| | | | | |||||||||||||||
Sbjct 486 CCACTACGTCCTCTGGATTTGATACATCCTCTG---C-TGAGGAGGATACAGATGATCAG 541
Query 643 ACTTTGTTGGCTAGGAATGATGCCAGTAGTAGCACTAGTACTATGCCTGGAGGATTGAGT 702
|| |||||| | |||||| || ||| |||||||||| ||||||||||| ||||||||||
Sbjct 542 ACCTTGTTGTCCAGGAATCATTCCACTAGTAGCACTTGTACTATGCCTCAAGGATTGAGT 601
Query 703 GAATCCAGTTCTAGTAAATCGGGTAGCTTTGGTGATTTTCACAACTCTCCATTTAGTCAA 762
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 602 GAATCCAGTTCTAGTAAATCGGGTAGCTTTGGCGATTTTCACAACTCTCCATCGAGTCAA 661
Query 763 AGAGATGATTTGCTCAAGAAAGGGGCTAAATCTTGGTTAAAGAAGCTTGGTGTTTTGACA 822
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 AGAGATGATTTGCTCAACAAAGGGGCTAAATCTTGGTTAAAGAAGCTTGGTGTTTTGACA 721
Query 823 CATGTTCTTGAGTCTATGGACTGTGAATCAGTGAGA--ACGCAGTTGCATCAAGTTGCGC 880
|||||| ||||||||||||||||| ||||||||||| || || ||||||||||||||||
Sbjct 722 CATGTTTTTGAGTCTATGGACTGTCAATCAGTGAGATCAC-CA-TTGCATCAAGTTGCGC 779
Query 881 GAGTGCAGACACACAAAAAGCAGTTTAAGGAGCTTTCCTCTATGTGTATTGACCAAGAGT 940
|||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| |
Sbjct 780 GAGTGCAGACACACAAAAAGCACTTCAAGGAGCTTTCATCTATGTGTATTGACCAAGAAT 839
Query 941 TTTCAGCGCATGATGGCTCCATCTTAGCAATGAAGTTTTCTCCTGATGGGAAATACATTG 1000
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 840 TTTCAGCGCATGATGGCTCCATCTTAGCCATGAAGTTTTCTCCTGATGGGAAATACATTG 899
Query 1001 CAAGCGCTGGGGAAGACTGTGTTGTACGAGTTTGGAGTATCACCGAGGAAGAGAGAACAG 1060
|||||||||| |||||| ||||||| ||||||||||| || |||||||||||||||||||
Sbjct 900 CAAGCGCTGGTGAAGACGGTGTTGTTCGAGTTTGGAGCATAACCGAGGAAGAGAGAACAG 959
Query 1061 ACACGTATGAAGTAGCTGAGGTTGATTCTGGTGTTTACTTTGGGATGAATCAACGTTCTC 1120
||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 960 ACAAGTACGAAGTAGCTGAGGTTGATTCTGGTGTTTACTTTGGGATGAATCAACACTCTC 1019
Query 1121 AGATTGAGCCCCTGAAGATCAACAATGAGAAAACTGAAAAGAAGTCAAGTTTTTTAAGGA 1180
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||
Sbjct 1020 AGATTGAGCCCCTGAAGATCAACAATGAGAAAACGGAAAAGAAGACAAGTTTTTTGAGGA 1079
Query 1181 AGTCATCAGACTCAACTTGTGTTGTATTACCTCCTACCATCTTCAGTATATCGGAGAAGC 1240
|| |||| |||||||||||||| || ||||||||||||||||||||||||| ||||||||
Sbjct 1080 AGGCATCGGACTCAACTTGTGTAGTGTTACCTCCTACCATCTTCAGTATATTGGAGAAGC 1139
Query 1241 CTCTGCATGAGTTCAAAGGACATATAGGTGAGATCTTGGATCTTTCCTGGTCGGAGAAAG 1300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CTCTGCATGAGTTCAGAGGACATATAGGTGAGATCTTGGATCTTTCCTGGTCGGAGAAAG 1199
Query 1301 GGTATCTCTTGTCATCTTCTGTTGACGAGACTGTTCGTTTATGGAGAGTAGGTTGTGATG 1360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1200 GGTATCTCTTGTCATCTTCTGTCGACGAGACTGTTCGTTTATGGAGAGTAGGTTGTGATG 1259
Query 1361 AATGTCTTAGAACTTTCACTCATAACAATTTCGTGACTTGTGTGGCATTTAACCCTGTGG 1420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AATGTCTCAGAACTTTCACTCATAACAATTTCGTGACTTGTGTGGCATTTAACCCTGTGG 1319
Query 1421 ACGATAATTATTTCATAAGCGGATCCATCGATGGGAAAGTTCGAATATGGGATGTGACTC 1480
| ||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 1320 ATGATAATTATTTTATAAGTGGATCGATTGATGGGAAAGTTCGAATATGGGATGTGACTC 1379
Query 1481 GTTGTCGGGTGGTTGACTACACAGATATAAGAGACATTGTAACAGCTGTGTGCTATCGTC 1540
|||| ||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 1380 GTTGCCGGGTTGTTGACTACACAGACATAAGAGATATTGTAACTGCTGTGTGCTATCGTC 1439
Query 1541 CAGATGCAAAGGGTGCAGTAATAGGTTCTATGACAGGGAACTGCCGCTTCTACCATATAT 1600
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1440 CAGATGCAAAGGGTGCAGTAATAGGTTCCATGACAGGGAACTGCCGCTTCTACCATAT-T 1498
Query 1601 TT-GAGAATCAGCTGCAAATGGACCAAGAGATCAACGTTCATGGGAAGAAGAAGGTTGCA 1659
|| || |||| ||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1499 TTCGATAATCTGCTGCAAATGGACCAAGAGATCAACGTCCATGGGAAGAAGAAGGTTACA 1558
Query 1660 AGCAAAAGGATAAGTGGTCTGCAATATCTTCCCAGTGACAGTGACTCGGACAAAGTAATG 1719
|||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||
Sbjct 1559 AGCAAAAGGATAAGTGGTCTTCAATTTCTTCCCAGTGACAGTGACTCGTACAAAGTAATG 1618
Query 1720 GTGACTTCTGCTGATTCACAGATCCGCATCATATGCGGAGAAGACGTCATCTGCAAGCTG 1779
|| |||||||| ||||||||||| |||||| |||||||||| || ||||||||||||||
Sbjct 1619 GTTACTTCTGCCGATTCACAGATACGCATCTTATGCGGAGATGATGTCATCTGCAAGCTT 1678
Query 1780 AAAGCTTCTAGCCTTCGCACAACATCTGCTTCATTCATTTCAGATGGTAAACACATCATC 1839
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1679 AAAGCTTCTAGCCTTCGCACAACAGCTGCTTCATTCATTTCAGACGGTAAACACATCATC 1738
Query 1840 TCAACATCAGAGGATTCATACATTAATGTCTGGAGCTACTCTCAATTACCCAGCAAGAAG 1899
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 TCAACATCAGAGGATTCATCCATTAATGTCTGGAGCTACTCTCAATTACCCAGCAAGAAG 1798
Query 1900 CCGTATTCTGAAACACCGAAAAGCATTCGATCTTACGAGGGATTTCTCTCGCACAATGCA 1959
|||||||| ||||||||||||||||| || ||||||||||| ||| ||||||||||||||
Sbjct 1799 CCGTATTCAGAAACACCGAAAAGCATCCGGTCTTACGAGGGCTTTATCTCGCACAATGCA 1858
Query 1960 TCTGTGGCTATTCCTTGGCTCAGACAAGGAAGGAGGGATGGTCTGTCCGAGTGTATCACA 2019
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1859 TCTGTGGCTATTCCTTGGCTCAGACAAGGAAGTAGGGATGGTCTGTCCGAGTGTATCACA 1918
Query 2020 GATTTGGACATGAA-GATACCGAAAGTGGACTGTTTCTCTCCAATGAAAGGATCAACAAC 2078
|||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1919 GATTTGGACA-GAAAGATACCAAAAGTGGACTGTTTCTCTCCAATGAAAGGATCAACAAC 1977
Query 2079 GTGGCCTGAAGAGAAGCTGGAAGATGTTGCAATGAGCAACAGAGGGAAGCTGAAGCTTTT 2138
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1978 GTGGCCTGAAGAGAAGCTGGAAGATGTTGTAATGAGCAACAGAGGGAAGCTTAAGCTTTT 2037
Query 2139 GAGGAGCGCATGGCAGCCTCACCTGTGGGGGCTAGTGATTGTGACAGCGACTTGGGATGG 2198
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2038 GAGAAGTGCATGGCAGCCTCACCTGTGGGGGCTTGTGATTGTGACAGCGACTTGGGATGG 2097
Query 2199 AAGGATCAGAGTATTCCACAACTATGGTTTGCCAATTCGGGTTTAAAAGACATACACAAG 2258
|||||| |||||||||||||||||||||||||| ||||||| |||||| |||| |||||
Sbjct 2098 AAGGATTAGAGTATTCCACAACTATGGTTTGCCTGTTCGGGTCTAAAAGGCATAGACAAG 2157
Query 2259 TTATTATTAGATAGGATTCTTTTATTTGTTTACTTAGAGAGTAACATATGTATACACATT 2318
|||||| ||||||||||||||||||||| |||||| |||||| |||||||||||||||
Sbjct 2158 TTATTA---GATAGGATTCTTTTATTTGTT-ACTTAG-GAGTAATATATGTATACACATT 2212
Query 2319 ACACAGATATCT-AAAAGATGTCTTGTGCACTGTTTGTTGG 2358
|||||||||| | |||||||||||||||||||||| |||||
Sbjct 2213 ACACAGATAT-TGAAAAGATGTCTTGTGCACTGTTAGTTGG 2252
Score = 148 bits (80), Expect = 1e-34
Identities = 104/115 (90%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 94 CTCTCTTAAACCCTTTCAAAGAACT-AAACGCTACCAAAGGGTTTCAATTGAAAGAAGTG 152
|||||| |||||||||||||| | | |||| | | ||||||||||||||||||| ||||
Sbjct 28 CTCTCTAAAACCCTTTCAAAG-ATTGAAACTTTTCAAAAGGGTTTCAATTGAAAG-AGTG 85
Query 153 CCAATCCAACCGACAGATACTTTCATACCCGTTCGTTCGGTTTTTAATAACCCTT 207
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 86 CCTATCCAACCGACACATACTTTCATACCCGTTCGTTCGGTTTTTAATAACCCTT 140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91492768490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5