BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64620.1
Length=1589
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474883 jgi|Araly1|474883|fgenesh2_kg.2__13__AT1G64620.1 2013 0.0
Ahg473042 jgi|Araly1|473042|fgenesh2_kg.1__2996__AT1G28310.2 87.9 2e-16
Ahg473910 jgi|Araly1|473910|fgenesh2_kg.1__3864__AT1G47655.1 65.8 1e-09
Ahg951535 jgi|Araly1|951535|scaffold_803422.1 58.4 2e-07
> Ahg474883 jgi|Araly1|474883|fgenesh2_kg.2__13__AT1G64620.1
Length=1571
Score = 2013 bits (1090), Expect = 0.0
Identities = 1461/1624 (90%), Gaps = 90/1624 (6%)
Strand=Plus/Plus
Query 3 TTCAGAGTGTGTCAGAGTCAGACCAAACCCTTtctcttatctctctctctTACGAAGAAT 62
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1 TTCAGAGTGTGTCAGAGTCAGACCAAACCCTTTCTC---T-TCTCTCTCTTACGAAGAAT 56
Query 63 CCATCAAAAATCCCACATACACACAATATACGTGTATC-TATATATTCC-TTCAAATAAA 120
||||| ||||||||| |||||| ||||||||||||| | |||||||| |||| | |||
Sbjct 57 CCATC--AAATCCCAC--ACACACTATATACGTGTATCTTCTATATTCCTTTCATA-AAA 111
Query 121 AGTGACAGttttttaaga-aatataattaaattgtttaaattctcttttttcgtcttctt 179
||||||| ||||||| | ||||||||||||||||||||||||||| ||||||||||||
Sbjct 112 AGTGACA-ATTTTTAAAACAATATAATTAAATTGTTTAAATTCTCTAGTTTCGTCTTCTT 170
Query 180 cttgctttt--tcAAAAACCAGCTTTACCTTTCCACACACAC-T-TC----TTCGTTtc- 230
||| ||||| |||||||||||||| |||||||||||||| | || ||| ||||
Sbjct 171 CTTACTTTTAAAAAAAAACCAGCTTTAACTTTCCACACACACTTCTCTTTTTTC-TTTCT 229
Query 231 -tctctctctct-T-TCTCCTTAGCTTCCTCTTCAAGttttttttGATCAGCTGCAAATT 287
||||||||||| | ||||| ||||||| |||||||| ||||||||||||| ||||||
Sbjct 230 TTCTCTCTCTCTCTCTCTCCATAGCTTCTTCTTCAAG--GTTTTTGATCAGCTTCAAATT 287
Query 288 TCCATAGCCATGGACACTGCTAAATGGCCTCAGGAGTTTGTTGTGAAGCCAATGAACGAG 347
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 TCCATAGCCATGGACACAGCTAAATGGCCTCAGGAGTTTGTTGTGAAGCCAATGAACGAG 347
Query 348 ATCGTGACAAACACATGCCTAAAACAACAGTCGAATCCTCCTTCTCCTGCTACTCCTGTG 407
|||||||||||||||||||| || ||||| |||||| |||| || |||||||||| |||
Sbjct 348 ATCGTGACAAACACATGCCT--AA-AACAGCCGAATCATCCTCCTACTGCTACTCCGGTG 404
Query 408 GAAAGGAAGGCAAGACCGGAGAAAGACCAGGCTTTGAACTGTCCAAGATGCAACTCCT-T 466
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
Sbjct 405 GAAAGGAAGGCAAGACCGGAGAAAGACCAGGCTTTGAACTGTCCTAGATGCAACT-CTCT 463
Query 467 AAACACCAAGTTCTGTTACTACAACAACTACAGCCTGACGCAGCCCAGGTACTTTTGTAA 526
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 464 AAACACCAAGTTCTGTTACTACAACAACTACAGCCTCACGCAGCCCAGGTACTTTTGTAA 523
Query 527 AGACTGCAGGAGGTATTGGACCGCAGGTGGTTCCCTCAGGAACATCCCCGTCGGTGGCGG 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 524 AGACTGCAGGAGGTATTGGACCGCAGGTGGTTCCCTCAGGAACATCCCCGTCGGTGGTGG 583
Query 587 CGTCCGCAAGAACAAGAGAtcttcttccaattcctcttcctcttcaccctcttcgtcttc 646
||||||||||||||||||| | | | ||||||||||||||||||||||||||
Sbjct 584 CGTCCGCAAGAACAAGAGA------T-C---T--TCTTCCTCTTCACCCTCTTCGTCTTC 631
Query 647 ttcttcAAAGAAACCTCTTTTTGCCAACAACAACACGCCTACGCCTCCTCTTCCTCATCT 706
|||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| |
Sbjct 632 TTCTTCCAAGAAACCTCTTTTTGCCCGCAACAACACGCCTCCGCCTCCTCTTCCTCAGCG 691
Query 707 TAACCCTAAGATTGGTGAAGCAGCCGCTACTAAAGTTCAAGACTTGACGTTTTCTCAAGG 766
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 692 TAACCCTGAGATTGGTGAAGCAGCGGCTACTAAAGTTCAAGACTTGACGTTTTCTCCGGG 751
Query 767 GTTTGGGAACGCCCACGAGGTTAAAGATCTCAACTTGGCGTTTTCTCAAGGGTTTGGGAT 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 GTTTGGGAACGCCCACGAGGTTAAAGATCTCAACTTGGCGTTTTCTCAAGGGTTTGGGAT 811
Query 827 CGGTCA-CA--ATCA---TCACAGTAGTATCCCAGAGTTTCTGCAAGTAGTACCCAGCAG 880
| ||| || |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 TGCTCATCATCATCACAGTCACAGTAGTATCCCAGAGTTTCTGCAAGTAGTACCCAGCAG 871
Query 881 CAGTATGAAGAACAACCCACTGGTCTCAACTTCCTCGTCTTTGGAGCTTTTAGGGATCTC 940
|||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 872 CAGTATGAAGAACAACACACTTGTCTCAACTTCCTCGGCTTTGGAGCTTTTAGGGATCTC 931
Query 941 TAGTTCCTCTGCTTCCTCTAACTCACGCCCTGCTTTCATGTCTTATCCAAATGTTCATGA 1000
|| ||||||| ||| | | | ||||||||||||||||||||||||||||||||| ||
Sbjct 932 TACTTCCTCTAATTC-T-T--C--ACGCCCTGCTTTCATGTCTTATCCAAATGTTCACGA 985
Query 1001 TTCATCGGTCTACACAGCATCCGGGTTTGGTCTGAGTTACCCACAGTTTCAAGAGTTCAT 1060
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 986 TTCATCGGTCTACACAGCGTCCGGGTTTGGTCTGAGTTACCCACAGTTTCAAGACTTCAT 1045
Query 1061 GAGACCAGCTTTGGGATTCTCTCTTGATGGTGGGGATCCTCTACGTCAAGAAGAGGGGTC 1120
|||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1046 GAGACCGGCTTTGGGGTTCTCTCTTGATGGTGGGGATCCTCTACATCAAGAAGAGGGGTC 1105
Query 1121 CAGTGGCACTAATAATGGAAGGCCGTTGCTGCCATTTGAGAGCCTCCTCAAACTTCCAGT 1180
|||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||
Sbjct 1106 CAGTGGCACTAATAATGGAAGGCCTTTGCTGCCATTCGAGAGCCTC---AAACTTCCAGT 1162
Query 1181 TTCATCATCAAGCACCAATAGTGGTGGGAATGGCAATCTGAAAGAGAATAATGATGAGCA 1240
|||||||||||||||||| |||||||| |||| |||| ||||||||| ||||||| | ||
Sbjct 1163 TTCATCATCAAGCACCAACAGTGGTGGTAATGACAATGTGAAAGAGATTAATGATCACCA 1222
Query 1241 TAGTGATCATGAACATGAGAAAGAAGAAGGAGAAGCTGACCAATCTGTTGGGTTTTGGAG 1300
|||||||||||| || || |||||||||||||||||||| ||||||||||||||||
Sbjct 1223 TAGTGATCATGA----GA-AA-GAAGAAGGAGAAGCTGACCATTCTGTTGGGTTTTGGAA 1276
Query 1301 TGGCATGTTAAGTGCTGGTGCTTCTGCTGCTGCATCTGGTGGT---TCATGGCAATAATT 1357
||||||| ||||||||||||||||||| ||||| ||||||||| ||||||||||||||
Sbjct 1277 TGGCATGCTAAGTGCTGGTGCTTCTGCCGCTGCGTCTGGTGGTGGATCATGGCAATAATT 1336
Query 1358 TTAGTCATGGACCCCATCCCATGAGAG-TTTTTAGAAGAAATGATTACATTTTTCACCCA 1416
||||||||||||| | | ||||| ||||||||||||| ||||| |||||||| |||
Sbjct 1337 ATAGTCATGGACCC-A----A-GAGAGCTTTTTAGAAGAAAAGATTAAATTTTTCATCCA 1390
Query 1417 TGTTTTAAAAAGATGAGAGGGTTAACTATATAATCTGGGTGCTTACTATTTTAGTCCTTT 1476
|||||| |||||||||||||||||||||||||||| ||| ||||||||||||| ||||
Sbjct 1391 AATTTTAAGAAGATGAGAGGGTTAACTATATAATCTGTGTGTTTACTATTTTAGTTCTTT 1450
Query 1477 TCCTTTGGTTTCCTTCTCCTTTTCTAA-AAATTA-T-T-ATTAACTTTGTTGGG-TTGGG 1531
|||||||||||||| | | |||||||| |||||| | | ||||||||||||||| |||||
Sbjct 1451 TCCTTTGGTTTCCT-C-C-TTTTCTAAGAAATTAGTATTATTAACTTTGTTGGGGTTGGG 1507
Query 1532 G------ATGGATACTGTATGTATTTAGACTCTCTTTTAAATCAATCTCAGTTGTTAGTT 1585
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1508 GTTGGGGATGGATACTGTATGTATTTAGACTCTCTTTTAAATCAATCTCAGTTGTTCGTT 1567
Query 1586 ACCT 1589
||||
Sbjct 1568 ACCT 1571
> Ahg473042 jgi|Araly1|473042|fgenesh2_kg.1__2996__AT1G28310.2
Length=1613
Score = 87.9 bits (47), Expect = 2e-16
Identities = 92/113 (81%), Gaps = 6/113 (5%)
Strand=Plus/Plus
Query 468 AACACCAAGTTCTGTTACTACAACAACTACAGCCTGACGCAGCC-CAGGTACTTTTGTAA 526
||||| ||||||||||||||||||||||||||||| | ||||| | || ||||||| ||
Sbjct 149 AACACAAAGTTCTGTTACTACAACAACTACAGCCTCTCTCAGCCAC-GGCACTTTTGCAA 207
Query 527 AGACT-GCAGGAGGTATTGGACC-GCAGGTGGTTCCCTCAGGAACATCCCCGT 577
| || ||| |||||| ||||| | |||||| | ||||||||| | |||||
Sbjct 208 GG-CTTGCAAGAGGTACTGGACGAG-AGGTGGGACTCTCAGGAACGTTCCCGT 258
> Ahg473910 jgi|Araly1|473910|fgenesh2_kg.1__3864__AT1G47655.1
Length=700
Score = 65.8 bits (35), Expect = 1e-09
Identities = 102/133 (77%), Gaps = 10/133 (8%)
Strand=Plus/Plus
Query 456 TGCAACTCCTTAAACACCAAGTTCTGTTACTACAACAACTACAGCCT-GACGCAGCC-CA 513
||||||||| | ||||||||||||||||||||||||||||| || | | ||||| |
Sbjct 164 TGCAACTCCACCACCACCAAGTTCTGTTACTACAACAACTACAATCTTG-CTCAGCCTC- 221
Query 514 GGTACTTTTGTAAAGACT-GCAGGAGGTATTGGACCGCA-GGTGGTTCCCTCAG-GAACA 570
| ||||| || ||| || || | | || ||||| || |||||| | ||| | || |
Sbjct 222 GTTACTTCTGCAAAT-CTTGCCGCCGTTACTGGACT-CAAGGTGGTACACTCCGTGA-CG 278
Query 571 TCCCCGTCGGTGG 583
|||||||||||||
Sbjct 279 TCCCCGTCGGTGG 291
> Ahg951535 jgi|Araly1|951535|scaffold_803422.1
Length=713
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 468 AACACCAAGTTCTGTTACTACAACAACTACA 498
|||||||||||||||||||||||||||||||
Sbjct 135 AACACCAAGTTCTGTTACTACAACAACTACA 165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59535052935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5