BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64625.1
Length=1896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906932 jgi|Araly1|906932|Al_scaffold_0002_13 1884 0.0
> Ahg906932 jgi|Araly1|906932|Al_scaffold_0002_13
Length=3252
Score = 1884 bits (1020), Expect = 0.0
Identities = 1225/1320 (93%), Gaps = 29/1320 (2%)
Strand=Plus/Plus
Query 462 ATTG-TTT-CAGTGGGAACATGAGTTTCAGAATCAGTTTCTCTGTGGCTTTAAGATTCTT 519
|||| ||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 313 ATTGTTTTGCAGTGGGACCATGAGTTTCAGAATCAGTTTCTCTCTGGCTTTAAGATTCTT 372
Query 520 ATACGGCAGTTTACTTATACACAGACTATCGCAATCATTCCACTAGGATCCAGCGGCGTT 579
|| ||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 373 ATTCGGCAGTTTCCTTATACACAGACTATAGCAATCCTTCCACTAGGATCCAGCGGCGTT 432
Query 580 GTTCAGCTAGGATCTACTCAAAAGATTCTTGAGAGCACAGAGATATTGGAACAAACAACA 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 GTTCAGCTAGGATCTACTCAAAAGATTCTTGAGAGCACAGAGATATTGGAACAAACAACA 492
Query 640 AGAGCTCTCCAGGAGACGTGTTT-AAAGCCACATGATTCCGGTGATCTCGATACTC---T 695
|||||||| |||||||||||||| ||| ||| ||||||| || ||||||||||||| |
Sbjct 493 AGAGCTCTGCAGGAGACGTGTTTCAAA-CCAGATGATTCGGGGGATCTCGATACTCTGTT 551
Query 696 ---GT-TTGAGT--CACTGGGAGATTGTGAGATTTTCCCAGCTGAATCTTTTCAAGGATT 749
|| || ||| |||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 552 CGAGTCTTTAGTCCCACTGGGAGATTACGAGATTTTCCCAGCTGAATCTTTCCAAGGATT 611
Query 750 TAGCTTTGATGACATCTTCGCTGAGGACAATCCTCCTTCTTTGCTCAGCCCTGAGATGA- 808
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 612 CAGCTTTGACGACATCTTCGCTGACGACAATCCTCCTTCTTTGCTCAGCCCTGAGATGAT 671
Query 809 -TC---T----CCTCTGAAGCAGCTTCTTCCAACCAAGATCTGACCAATGGAGATGATTA 860
|| | |||||||||||||||||||| |||||||| | | ||||||||||||||
Sbjct 672 CTCTGTTGAAACCTCTGAAGCAGCTTCTTCCCACCAAGATATTAGCAATGGAGATGATTT 731
Query 861 TGGGTTCGACATTCTCCAGTCTTACTCTCTGGACGATCTATACCAGCTGCTCGCTGATCC 920
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
Sbjct 732 TGGGTTCGACATTCTCGAGTCTTACTCTCTGGACGATCTTTACCAGCTGCTCGCTGATTC 791
Query 921 ACCAGAACAGAACTGCTCTTCCATGGTGATCCAAGGAGTTGACAAGGATCTTTTCGACAT 980
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 792 ACCAGAACAGAACTGCTCTTCCATGGTGATCCAAGGAGATGACAAGGATCTTTTCGACAT 851
Query 981 TTTGGGGATGAATTCTCAAACGCCTACAATGGCTTTGCCACCTAAAGGACTCTTCTCAGA 1040
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 852 TTTGGGGATGAATCCTCAAACGCCTACAATGGCTTTGCCGCCTAAAGGACTCTTCTCAGA 911
Query 1041 GCTCATAAGCAGCAGTCTTAGCAACAACACTTGTAGTAGTTCTCTCACGAACGTGCAAGA 1100
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 912 GCTCATAAGCAGCAGTCTTAGCAACAACACTTGTAGTAGTTCTCTCACAAACGTGCAAGA 971
Query 1101 GTACTCTGGTGTGAACCAGAGCAAAAGACGGAAGCTTGATACATCATCGGCGCATAGCTC 1160
|| ||||| ||||||||||||||||||||||||||||| |||||||| | |||||||||
Sbjct 972 CTATTCTGGCGTGAACCAGAGCAAAAGACGGAAGCTTGAAACATCATCAGAGCATAGCTC 1031
Query 1161 AAGCTTGTTCCCTCAGGAGGAGACAGTAACAAG-TCGGAGTTTGTGGATTGATGATGATG 1219
||||||||| || |||||||||||||||| | | |||||||||||||| |||||||||
Sbjct 1032 AAGCTTGTTTCCGCAGGAGGAGACAGTAA-ATGGTCGGAGTTTGTGGA---ATGATGATG 1087
Query 1220 AGAGATCAAGTATTGGAGGGAACTGGAAGAAGCCTCACGAAGAAGGTGTGAAGAAGAAAA 1279
||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1088 AGAGATCGAGCGTTGGAGGGAATTGGAAGAAGCCTCACGAAGAAGGTGTGAAGAAGAAAA 1147
Query 1280 GAGCAAAGGCAGGAGAAAGCAGGAGGCCGAGGCCTAAGGACCGTCAGATGATACAAGACC 1339
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 GAGCAAAGGCAGGAGAGAGCAGGAGGCCGAGGCCTAAGGACCGTCAGATGATACAAGACC 1207
Query 1340 GTATCAAGGAGTTGCGAGGGATGATTCCAAATGGAGCTAAGTGTAGCATAGATACGTTGC 1399
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 GTATCAAGGAGCTGCGAGGCATGATTCCAAATGGAGCTAAGTGTAGCATAGATACGTTGC 1267
Query 1400 TGGATCTGACCATAAAACACATGGTGTTCATGCAAAGCCTCGCCAAGTATGCAGAGAGAC 1459
| |||||||||||||||||||||||||||||||||||| |||||||||| || || ||||
Sbjct 1268 TTGATCTGACCATAAAACACATGGTGTTCATGCAAAGCATCGCCAAGTACGCGGACAGAC 1327
Query 1460 TCAAACAACCATACGAGTCTAAGCTGGTGAAGGAGAAAGAGAGAACATGGGCGTTGGAAG 1519
||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1328 TCAAAGAACCATACGAGCCTAAGCTGGTGAAGGAGAAAGAGAGAACGTGGGCGTTGGAAG 1387
Query 1520 TGGGGGAAGAAGGAGTGGTATGTCCGATAATGGTGGAGGAATTGAACAGGGAAGGAGAAA 1579
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1388 TGGGGGAAGAAGGAGTGGTATGTCCGATAATGGTGGAGGAATTGAACAGGAAAGGAGAAA 1447
Query 1580 TGCAGATAGAGATGGTGTGTGAGGAAAGAGAGGAGTT-CTTGGAGATAGGACAAGTGGTG 1638
||||||||||||||||||||||||||||||| ||||| || |||||||||| | ||||||
Sbjct 1448 TGCAGATAGAGATGGTGTGTGAGGAAAGAGATGAGTTTCT-GGAGATAGGAGACGTGGTG 1506
Query 1639 AGAGGATTGGGATTGAAGATATTGAAAGGAGTGATGGAAACAAGAAAAGGACAAATATGG 1698
||||||||||| ||||||||| |||||||||||||||||| ||||||||| |||| ||||
Sbjct 1507 AGAGGATTGGGGTTGAAGATAGTGAAAGGAGTGATGGAAAGAAGAAAAGGGCAAACATGG 1566
Query 1699 GCACACTTCATCGTACAGGCAAAGCCACAAGTCACAAGGATTCAAGTCTTGTACTCACTT 1758
||||| ||||||||| |||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1567 GCACAGTTCATCGTAGAGGCAAAGCCACAAGTGACAAGGATTCAAGTATTGTACTCACTT 1626
Score = 141 bits (76), Expect = 2e-32
Identities = 84/88 (95%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 320 TATTGAGATTTGAAGAAGCATACAATGATGAACAATCAGTCGCACTAGTTGATGATATGG 379
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 47 TATTGAGATTTGAAGAAGCATACAATGATGAACAATCAGTCGCCCTAGTTGATGATATGA 106
Query 380 TTCTCCAGGCTCCTATCTTAGGCCAAGG 407
|||| ||||||| |||||||||||||||
Sbjct 107 TTCTACAGGCTCATATCTTAGGCCAAGG 134
Score = 99.0 bits (53), Expect = 1e-19
Identities = 62/66 (94%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 407 GAATTGTGGGAGAAGTAGCTTC-ATCCGGAAACCATCAATGGCTGTTCTCAGACACATTG 465
|||||||||| ||||||||||| | |||| ||||||||||||||||||||||||||||||
Sbjct 218 GAATTGTGGGCGAAGTAGCTTCGA-CCGGTAACCATCAATGGCTGTTCTCAGACACATTG 276
Query 466 TTTCAG 471
||||||
Sbjct 277 TTTCAG 282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71228758150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5