BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64640.1
Length=818
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474878 jgi|Araly1|474878|fgenesh2_kg.2__8__AT1G64640.1 1035 0.0
> Ahg474878 jgi|Araly1|474878|fgenesh2_kg.2__8__AT1G64640.1
Length=794
Score = 1035 bits (560), Expect = 0.0
Identities = 729/804 (91%), Gaps = 38/804 (5%)
Strand=Plus/Plus
Query 1 GCTTAGCTTTTCAGGAGATCTGAGAAGCAAAGT--A-GACC---AAT----CAAGATGGG 50
|||| |||||||||||||||||||||||||||| | ||| ||| |||||||||
Sbjct 1 GCTTTGCTTTTCAGGAGATCTGAGAAGCAAAGTACACCACCAATAATCAAGCAAGATGGG 60
Query 51 AGTGATGAGTTTGAGCAAG-ACGATGGTGGTGGTGGTATTACAGGTGATGATATTGTTGG 109
||| |||||||||||| || |||||| |||| || |||||||||||||||||||||| |
Sbjct 61 AGTCATGAGTTTGAGC-AGCACGATGATGGT-GT--TATTACAGGTGATGATATTGTTAG 116
Query 110 GACAAGAGATTGGTAAAGTGTCGTCGACTCTATACAAAGTTGGGGACTTGGACGCTTGGG 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 GACAAGAGATTGGTAAAGTGTCGTCGACTCTATACAAAGTTGGGGACTTGGACGCTTGGG 176
Query 170 GCATCCCAATTGATGCTAAAGTCTATTCCAAATGGCCCAAATCTCACTCTTTCAAGATCG 229
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 177 GTATCCCAATTGATGCTAAAGTCTACACCAAATGGCCCAAATCTCACTCTTTCAAGATCG 236
Query 230 GTGACTCCCTCTTGTTCTTGTACCCACCAAGCGAAGACTCACTGATTCAAGTGACGCCCT 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GTGACTCCCTCTTGTTCTTGTACCCACCAAGCGAAGACTCACTGATTCAAGTGACGCCCT 296
Query 290 CCAATTTCAAGAGCTGCAACACCAAAGACCCAATCTTGTACATGAACGACGGCAACTCTC 349
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 297 CCAATTTCAAAAGCTGCAACACCAAAGACCCAATCTTGTATATGAACGACGGCAACTCTC 356
Query 350 TCTTCAACCTCACCCAAAACGGAACCCTATACTTCACAAGTGCAAACCCCGGCCACTGTA 409
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 357 TCTTCAACCTCACCCAAAACGGTACCCTATACTTCACAAGTGCAAATCCCGGCCACTGTA 416
Query 410 CCAAGTACCAGAAGCTCCTAGTCTCCGTCGGCACCTACTCCGCCGAAGCAGAGGCCTTGT 469
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CCAAGTACCAGAAGCTCCTCGTCTCCGTCGGCACCTACTCCGCCGAAGCAGAGGCCTTGT 476
Query 470 CTCCGTCTTCTGCCGCCGACGCTCCCTCTTACCAAAACGCCTTCGGGTCCATTCCTCTCT 529
||||||| ||||||||||||| |||||| |||||||||||||||||||| || |||||||
Sbjct 477 CTCCGTCGTCTGCCGCCGACGGTCCCTCGTACCAAAACGCCTTCGGGTCTATCCCTCTCT 536
Query 530 CTCAGAAATCGTCTGCTTCCTCCTCGCTCATTTCTGCTTTCTCCACTGTCGCTGCTTCGC 589
||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 537 CTCAGAAATCGTCGGCTACCTCCTCGCTCATTTCGGCTTTCTCCACTGTCGCTGCTTCGC 596
Query 590 TGGCTTGCGCTGTCGTCGGTGCAATCATGTGATGGAATTTTTGAATATCTTTATTTATTA 649
|||||||||||||||||||||||||||||||| |||| |||| | || | | ||
Sbjct 597 TGGCTTGCGCTGTCGTCGGTGCAATCATGTGA---AATTG--GAAT-T-TTGAAT-AT-- 646
Query 650 AAGCAAACAGTCATTGCTTCttttttgttttgtttttGTTATCATCTCTTAATTATTTAT 709
| | ||| || ||||| |||||||||| ||||| |||||||||||||||||
Sbjct 647 ---CTT----T-ATT--TT-TTTTT-GTTTTGTTTT-GTTATGATCTCTTAATTATTTAT 693
Query 710 TCTTCTTCATTGGCTCCTATCTTTTTATATCTCGAAAATGAATTTGCCAATTTTCTAAAC 769
|||||||||| |||||| ||| ||||||||||||| ||||||| ||||||||| ||||||
Sbjct 694 TCTTCTTCATCGGCTCCGATCCTTTTATATCTCGACAATGAATATGCCAATTTCCTAAAC 753
Query 770 TATTAACAGATATGTACACACAAT 793
|| ||||||||| | ||||||||
Sbjct 754 TAGCAACAGATATATTCACACAAT 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30231473181
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5