BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64650.1
Length=1781
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474876 jgi|Araly1|474876|fgenesh2_kg.2__6__AT1G64650.1 2837 0.0
> Ahg474876 jgi|Araly1|474876|fgenesh2_kg.2__6__AT1G64650.1
Length=1724
Score = 2837 bits (1536), Expect = 0.0
Identities = 1645/1697 (97%), Gaps = 10/1697 (1%)
Strand=Plus/Plus
Query 66 TGCGAGATCTGATCGTATCAATGGAGATCTTCTACTTCGTGGTGTTCGGTGGCCTGGCTG 125
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 34 TGCGAGATCTGATCGTATCAATGGAGATCTTCTACTTCGTGGTGTTCGGTGGGTTGGCTG 93
Query 126 CGATCGTCGCCGGCTTGGAGCTGAGCAAATCGAACAAAGACCGCATTAACACCTCCTCCG 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 94 CGATCGTCGCCGGCTTGGAGCTGAGCAAATCGAACAAAGACCGCATTAACACCTCCTCCG 153
Query 186 CCTTCAACTCCTTCAAGAACAACTATCTCCTCGTCTACTCTCTCATGATGGCTGGGGACT 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 CCTTCAACTCCTTCAAGAACAACTATCTCCTCGTCTACTCTCTCATGATGGCTGGGGACT 213
Query 246 GGTTGCAGGGTCCGTATGTGTACTATCTCTACAGCACTTATGGCTTTGGAAAGGGAGAGA 305
|||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 214 GGTTGCAGGGTCCGTATGTGTACTATCTCTACAGCACTTATGGCTTCGGCAAGGGGGAGA 273
Query 306 TCGGTCAGCTCTTTATTGCTGGTTTTGGATCTTCCATGTTGTTTGGCACCATTGTTGGAT 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 TCGGTCAGCTCTTTATTGCTGGTTTTGGATCTTCCATGTTGTTTGGCACCATTGTTGGAT 333
Query 366 CTCTTGCCGACAAACAGGGTCGCAAGAGAGCTTCTATCACCTACTGTATCACCTACATTC 425
|||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||
Sbjct 334 CTCTTGCCGACAAACAGGGTCGCAAGCGAGCTTCTATCACCTACTGCATTACCTACATTC 393
Query 426 TCAGCTGTATCACCAAACATTCTCCCCAGTACAAAGTTTTGATGGTCGGTCGTGTTCTTG 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 TCAGCTGTATCACCAAACATTCTCCCCAGTACAAAGTTTTGATGGTCGGTCGTGTTCTTG 453
Query 486 GTGGTATCGCTACTTCTCTCCTTTTCTCTGCCTTCGAATCCTGGCTCGTCGCTGAGCACA 545
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 454 GTGGTATCGCTACTTCTCTCCTTTTCTCTGCCTTTGAATCCTGGCTTGTCGCTGAGCACA 513
Query 546 ACAAGAGAGGCTTCGAGCAGCAGTGGCTTTCTGTCACTTTCTCCAAGGCTATTTTCCTCG 605
|||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||
Sbjct 514 ACAAGAGAGGCTTCGAGCAGCAGTGGCTCTCTCTCACTTTCTCCAAGGCTATCTTCCTCG 573
Query 606 GTAATGGATTAGTCGCCATCATTGCTGGCCTCTTTGGCAATTACCTTGTCGATTCTCTCT 665
||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 574 GTAATGGATTAGTTGCCATCATTGCTGGACTCTTTGGCAATTTCCTTGTCGATTCTCTCG 633
Query 666 CCCTCGGTCCTGTTGCTCCTTTCGATGCTGCTGCTTGCTTCCTTGCTATTGGTATGGCCG 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 CCCTCGGTCCTGTTGCTCCTTTCGATGCTGCTGCTTGCTTCCTTGCTATTGGTATGGCCG 693
Query 726 TTATTATCTCATCTTGGTCCGAAAACTATGGAGATCCATCTGAAAACAAAGACCTTCTTA 785
||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 694 TTATTATTTCATCTTGGTCCGAAAACTATGGTGATCCCTCTGAAAACAAAGACCTTCTTA 753
Query 786 CCCAGTTCAAGAACGCTGCATCTGCCATTGCTTCTGATGAGAAGATCGCATTACTCGGTG 845
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 754 CCCAGTTCAAGAACGCTGCATCTGCCATTGCTTCTGATGAGAAGATCGCATTGCTTGGTG 813
Query 846 CTATTCAGTCTCTGTTTGAAGGGTCCATGTACACCTTTGTGTTTCTCTGGACTCCTGCTT 905
| || |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 CCATACAGTCTCTCTTCGAAGGGTCCATGTACACCTTTGTGTTTCTCTGGACTCCTGCTT 873
Query 906 TGAGCCCAAACGAAGAGGACATTCCACATGGTTTCATATTTGCAACATTCATGCTGGCTT 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 TGAGCCCAAACGAAGAGGACATTCCACATGGTTTCATATTTGCAACATTCATGCTGGCTT 933
Query 966 CGATGCTTGGTAGCTCCATTGCCTCTCGTTTGTTGGCACATTCGTCTCCAAAAGTAGAGA 1025
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 CCATGCTTGGTAGCTCCATTGCCTCTCGTTTGTTGGCACATTCGTCTCCAAAAGTAGAGA 993
Query 1026 GCTATATGCAGATCGTATTTGTGATATCTTCTGCTGCTCTAATGCTTCCTGTTGTAACAA 1085
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 994 GCTATATGCAGATCGTATTTGTGATATCTTCTGCAGCTCTAATGCTTCCTGTTGTAACAA 1053
Query 1086 GCTTCTTGGTGGCGCCCTCAGGTGTAAAAGGTGGAAGCATATCCTTCTCTGGATGCATTC 1145
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1054 GTTTCTTGGTGGCGCCCTCAGGTGTAAAAGGTGGAAGCATATCATTCTCTGGATGCATTC 1113
Query 1146 AGTTAATGGGTTTCTGCACATTTGAAGCGTGTGTAGGAATCTTCTGGCCATCTATAATGA 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 AGTTAATGGGTTTCTGCACATTTGAAGCGTGTGTAGGAATCTTCTGGCCATCTATAATGA 1173
Query 1206 AGATGAGATCGCAATACATTCCAGAGGAAGCTAGAAGCACCATCATGAATTTTTTCCGCA 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 AGATGAGATCGCAATACATTCCAGAGGAAGCTAGAAGCACCATCATGAATTTTTTCCGCA 1233
Query 1266 TCCCACTCAACATCTTTGTCTGCCTTGTATTATACAATGTTGACGCGTTTCCAATGACCG 1325
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1234 TCCCACTCAACATCTTTGTCTGCCTTGTATTGTACAATGTTGACGCGTTTCCAATGACCG 1293
Query 1326 TGATGTTTGGAATGTGCTCTGTATTCCTTTTTGTGGCCTCTATATTGCAGAGGAGGTTGA 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 TGATGTTTGGAATGTGCTCTGTATTCCTTTTTGTGGCCTCTATATTGCAGAGGAGGTTGA 1353
Query 1386 TGAATGTAGCCGAGATCCACAAGTCAAGATCACAAGAGTGGTCAGCAGAAAAGGAGATGA 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354 TGAATGTAGCCGAGATCCACAAGTCAAGATCACAAGAGTGGTCAGCAGAAAAGGAGATGA 1413
Query 1446 CCTCAGAAGCTGACCCTCTAAACCCATAATAACCAAATCTC-CGATGACATAAGAAAAAA 1504
||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||
Sbjct 1414 CCTCAGAAGCTGACCCTCTAAACCCATAATAACCAAATCTCTC-ATGACATAA-AAAAAA 1471
Query 1505 GAAGAAACGCCGTTCCGT-TTCTCTTTATGATTTTTCTACTTGTCTTAATATGTTCGTTG 1563
|| ||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1472 GAGGAAACGCCGTTCCGTCTTCTCTTGATGATTTTTCTACTTGTCTTAATACGTTCGTTG 1531
Query 1564 GTCATAAAGTCTTTCCACTTGTTTAGTTATATTTGGATTTTGTGCCTTCACCAGATGTAG 1623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 GTCATAAAGTCTTTCCACTTGTTTAGTTATATTTGGATTTTGTGCCTTCACCAGATGTAG 1591
Query 1624 CAAACACACCCTAATACCTCTGCACGTCAGCTTATTTGGGCTTTAGCCACTATTCTTCTT 1683
||||||| || ||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1592 CAAACAC-CC-TAATACCTCTGCACGTCAGCTTATTTGGGCTCTGGCCACTATTCTTCTT 1649
Query 1684 GAATCTTTCTACttttttttttGTGCGTCAAAAACAATCTTTATAAGTC--GATTTTGGC 1741
|||||||| ||||| |||| |||| |||||||||||||||||||||| ||| |||||
Sbjct 1650 AAATCTTTCAACTTTCTTTT--GTGCCTCAAAAACAATCTTTATAAGTCACGATATTGGC 1707
Query 1742 CCTAAACCATAGAAATG 1758
||| |||||||||||||
Sbjct 1708 CCTGAACCATAGAAATG 1724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66848379975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5