BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64660.1
Length=1628
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914030 jgi|Araly1|914030|Al_scaffold_0001_4284 2134 0.0
> Ahg914030 jgi|Araly1|914030|Al_scaffold_0001_4284
Length=1326
Score = 2134 bits (1155), Expect = 0.0
Identities = 1269/1326 (96%), Gaps = 0/1326 (0%)
Strand=Plus/Plus
Query 60 ATGGCTCATTTCCTCGAGACACAGGAGCCCCTCGTATTCTCCGGGAAGAAACGAAACGAT 119
||||| |||||||||||||||||| ||||||||||||||||||| |||||||| ||||||
Sbjct 1 ATGGCCCATTTCCTCGAGACACAGCAGCCCCTCGTATTCTCCGGAAAGAAACGTAACGAT 60
Query 120 CGCGATGACGAAGACGGTGACGCCTTGGTTGCGAAGAAATCAGCACTGGCGGTGTGTGAT 179
||||||||||| ||||| |||||||||| ||| |||||||| |||||||||||| |||||
Sbjct 61 CGCGATGACGACGACGGAGACGCCTTGGCTGCAAAGAAATCGGCACTGGCGGTGCGTGAT 120
Query 180 GCCGACCCTGCAGCGGCCATAGCGAATATCCGACATGAGTTTGGGGAGCACGGGGGAGTA 239
| |||||||||||||||| || ||| ||||||||||||||||||||||||||||||||
Sbjct 121 GTCGACCCTGCAGCGGCCCTATCGAGCATCCGACATGAGTTTGGGGAGCACGGGGGAGTG 180
Query 240 AACATGTCCATCGAAGCCTCCGCCACCTTCACCGTCATGGAACCGGATACCATGAGGCGG 299
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 AACATGTCCATCGAAGCCTCCGCCACCTTCACCGTCATGGAACCTGATACCATGAGGCGG 240
Query 300 ATGTTCACCGGAGAACTGGGACCGGACAACGACTTCTACGTATACAGCCGACACTTCAAC 359
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 ATGTTCTCCGGAGAACTGGGACCGGACAACGACTTCTTCGTATACAGCCGACACTTCAAC 300
Query 360 CCCACCGTGCTCAACCTCAGCCGCCAGATGGCTGCTCTCGAAGGCACCCAAGCTGCCTAC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCCACCGTGCTCAACCTCAGCCGCCAGATGGCTGCTCTCGAAGGCACCCAAGCTGCCTAC 360
Query 420 TGTACCTCTAGCGGTATGTCGGCGATATCGTCAGTGATGCTGCAACTGTGCAGCAGCGGA 479
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGTACCTCAAGCGGTATGTCGGCGATATCGTCAGTGATGCTGCAACTGTGCAGCAGCGGA 420
Query 480 GGACACGTGGTTGCGGCAAGCACGCTATACGGAGGAACACACGCTTTGCTCTCTCATTTC 539
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 GGACACGTGGTGGCGGCAAGCACGCTCTACGGAGGAACACACGCTTTGCTCTCTCATTTC 480
Query 540 TTGCCACGGACATGTAACATAACCACCTCCTTCGTTGACATAACGGACCATGGCGCCGTG 599
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 TTGCCACGGACCTGTAACATAACCACCTCCTTCGTTGACATAACGGACCATGGCGCGGTG 540
Query 600 GCAAACGCGATCGTTGAGGGTAGGACACAGGTTCTCTACTTTGAGTCGGTGGCAAACCCG 659
||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 541 GCAAACGCGATTGTCGAGGGTAGGACAGAGGTTCTCTACTTTGAGTCGGTGGCAAACCCG 600
Query 660 ACGCTGACTGTGGCTGACATACCTGAGCTGAGCCGTATGGCACACGAGAAGGGCGTGACG 719
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 601 ACGCTGACTGTGGCTGACATACCTGAGCTTAGCCGTATGGCACACGAGAAGGGCGTGACA 660
Query 720 GTGGTGGTGGACAACACATTCGCCCCCATGGTGCTGTCTCCGGCCAAGCTTGGAGCAGAT 779
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTGGTGGTGGACAACACCTTCGCCCCCATGGTGCTGTCTCCGGCCAAGCTTGGAGCAGAT 720
Query 780 GTGGTGGTTCACAGTATCTCCAAGTTCATCAGTGGTGGGGCTGACATCATCGCAGGGGCC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GTGGTGGTTCACAGTATCTCCAAGTTCATCAGTGGTGGGGCTGACATCATCGCAGGGGCC 780
Query 840 GTGTGTGGGAGTGAGAATTTGGTGAAAGAGATGATGGATCTTCGTGGCGGATCTCTGATG 899
||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||
Sbjct 781 GTGTGTGGGAGTGAGAAGCTGGTGAAAGGGATGATGGATCTGCGTGGCGGATCTCTGATG 840
Query 900 CTTCTAGGTCCCACCATGAACGCCAAGGTGGCTTTCGAGCTCTCCGAGCGAATCCCTCAC 959
|| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 841 CTGCTAGGTCCCACAATGAACGCCAAGGTGGCTTTCGAGCTCTCCGAGCGAATACCTCAC 900
Query 960 TTGGGCCTACGCATGAGAGAGCACAGCCACAGAGCCCAAGTGTATGCGGAGAGAATGAGG 1019
||||||||||||||||| |||||||||| |||||||||||| ||||| ||||||||||||
Sbjct 901 TTGGGCCTACGCATGAGGGAGCACAGCCGCAGAGCCCAAGTATATGCTGAGAGAATGAGG 960
Query 1020 GATTTGGGCATGAAAGTCATATATCCAGGGCTCGAGACCCACCCGCAGCACAAGCTATTC 1079
|| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 961 GAGTTGGGGTTGAAAGTCATATATCCAGGGCTCGAGACCCACCCGCAGCACAGGCTATTC 1020
Query 1080 AAAGGGATGGTGAATAGAGACTATGGATACGGAGGATTGCTGTCGATAGACATGGAGACA 1139
||| |||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1021 AAAAGGATGGCGAACAGAGACTACGGATACGGAGGATTGCTGTCGATAGACATGGAGACA 1080
Query 1140 GAGGAGAAAGCCAACAAGCTCATGGCATATCTCCAGAACGCCACTCAGTTTGGCTTCATG 1199
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1081 GAGGAGAAAGCCAACAAGCTCATGACATATCTCCAGAACGCCACTCAGTTCGGCTTCATG 1140
Query 1200 GCCGTCAGTTTGGGTTACTACGAGACACTCATGTCTTGCTCCGGGAGCAGCACTAGCAGC 1259
||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 1141 GCCGTCAGTTTGGGTTACTACGAGACACTCATGTCCTGCTCCGGCAGCAGCACCAGCAGC 1200
Query 1260 GAGCTTGACCCCTCACAGAAGGAAGCTGCAGGCATCTCTCCTGGTCTTGTACGAATGTCG 1319
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1201 GAGCTTGACCCCTCGCAGAAGGAAGCTGCAGGCATCTCTCCTGGCCTTGTACGAATGTCT 1260
Query 1320 GTGGGGTATGTGGGTACATTGGAGCAGAAGTGGACACAATTCGAGAAAGCATTCCTCAGA 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GTGGGGTATGTGGGTACATTGGAGCAGAAGTGGACACAATTCGAGAAAGCATTCCTCAGA 1320
Query 1380 ATGTAA 1385
||||||
Sbjct 1321 ATGTAA 1326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61020572490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5