BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64670.1
Length=1662
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474084 jgi|Araly1|474084|fgenesh2_kg.1__4038__AT1G64670.1 2675 0.0
Ahg337911 jgi|Araly1|337911|fgenesh1_pg.C_scaffold_2000010 909 0.0
> Ahg474084 jgi|Araly1|474084|fgenesh2_kg.1__4038__AT1G64670.1
Length=1655
Score = 2675 bits (1448), Expect = 0.0
Identities = 1589/1656 (96%), Gaps = 13/1656 (1%)
Strand=Plus/Plus
Query 19 CACCACCATACATACATACAACTTACATACATACACGTCTTCCACAAGACTCAAACTCCA 78
||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||
Sbjct 1 CACCACCATACATACATACAACTTACATACATACATGCCTACCACAAGACTCAAACTCCA 60
Query 79 CAGCATGGGATTCTCACGGTCGCTCAACCGCACCGTGGGCGTCTTCGTCTTCTTCATCCT 138
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 61 CAGCATGGGATTCTCACGGTGGCTCAACCGCACCGTGGGCTTCTTCGTCTTCTTCATCCT 120
Query 139 CGACATTGTTGATTTCCTGCTTTGCTTTACCTACAAGACTCTTGATTTCTTCTTCGAGTC 198
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGACATTGTGGATTTCTTGCTTTGCTTTACCTACAAGACTCTTGATTTCTTCTTCGAGTC 180
Query 199 CGAGTGGAAACCCTGCTACTGCTGTCCGCCGCCCGAGGCCAAACCAATCTCGGCTGGAGG 258
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 181 AGAGTGGAAACCCTGCTACTGCTGTCCGCCGCCTGAGGCCAAACCAATCGCGGCTGGAGG 240
Query 259 GAACAGAGGCGGTAAGATGATAGTGTCGGAAAGATCAGGAGACTACTCGAAGGTGGTCTC 318
|| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 241 GAGCAGAGTCGGTAAGATGATAGTGTCGGAAAGATCAGGAGAGTACTCGAAGGTAGTCTC 300
Query 319 ACTCACAAGGACAAAGATCTATCTGGATGAGATCTCCGACACACTCTACTCTCGCCCTTC 378
||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||
Sbjct 301 ACTCACAAGGACAAAGATCCATCTGGATGAGATCTCTGACACACTCTACTCACGCCCTTC 360
Query 379 ACTCCTCACCAAGCTCACTAAGCTGGTGAAGTGCTTCAAGAAAGATGTTGTTAAATGCTG 438
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 361 ACTCCTCACCAGGCTCACTAAGCTGGTGAAGTGCTTCAAGAAAGATGTTGTGAAATGTTG 420
Query 439 TGATGAGTCCAAGAAGAGATCACCGTCAACTAAAAAGACATTACTCACTGTCAACTCCAC 498
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 TGATGAGTCCAAGAAGAGATCACCGTCAACTAAAAAGACATTACTCACTGTGAACTCCAC 480
Query 499 GGTGGTCGAGAAGTTGCAAAGAACACCAAGATGGTCTGATTGCCATTGCACTTTCTGCAC 558
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGTGGTCGAGAAGTTGCGAAGAACACCAAGATGGTCTGATTGCCATTGCACTTTCTGCAC 540
Query 559 TTCTTGGCTTTCCTCTTCCAACCAATCTCTCTTTGTCAATGTCCAACAGCCCACAGACAA 618
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 541 TTCTTGGCTTTCCTCTTCCAACCATTCTCTCTTTGTCAATGTCCAACAGCCCAAAGACAA 600
Query 619 CAAGGCACAAGAGAACGTAGTGTTCATTCATGGGTTCTTATCATCATCCACGTTTTGGAC 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CAAGGCACAAGAGAACGTAGTGTTCATTCATGGGTTCTTATCATCATCCACGTTTTGGAC 660
Query 679 GGAGACTCTGTTCCCAAACTTCTCAGACTCAGCCAAATCGAATTACAGGTTTCTCGCAGT 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGAGACTCTGTTCCCAAACTTCTCAGACTCAGCCAAATCGAATTACAGGTTTCTCGCAGT 720
Query 739 GGACCTGTTGGGTTATGGGAAAAGTCCAAAGCCGAACGATTCATTGTATACATTAAAAGA 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GGACCTGTTGGGTTATGGGAAAAGTCCAAAGCCGAACGATTCATTGTATACATTAAAAGA 780
Query 799 GCATTTAGAGATGATAGAGAGATCGGTGATTTCTCAGTTCAGACTCAAGACATTCCATTT 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCATTTAGAGATGATAGAGAGATCGGTGATTTCTCAGTTCAGACTCAAGACATTCCATTT 840
Query 859 AGTGGCTCACTCCCTAGGCTGCATTTTGGCTCTTGCGCTCGCGGTTAAACACCCAGGAGC 918
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 841 AGTGGCTCACTCCCTTGGCTGCATCTTGGCTCTTGCGCTCGCGGTTAAACACCCAGGAGC 900
Query 919 CATCAAGTCACTCACTCTATTGGCTCCTCCATATTATTCGGTGCCAAAAGGTGTGCAAGG 978
||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 901 CATCAAGTCGCTCACTCTATTGGCTCCTCCCTATTATTCGGTGCCAAAAGGAGTGCAAGG 960
Query 979 GACGCAATATGTGATGAGAAGACTGGCCCCCAAGGAAGTGTGGCCTCCGATGGCCTTCGG 1038
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||
Sbjct 961 GACGCAATATGTGATGAGAAAAGTGGCCCCCAAGGAAGTGTGGCCTCCGATGGCCTTTGG 1020
Query 1039 AGCCTCAGTGGCTAGCTGGTACGAGCACATTAGCCGCACAGTCAGTCTAGTGCTTTGCAA 1098
|||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1021 AGCCTCGGTGGCTAGCTGGTACGAGCACATTAGCCGCACCGTTAGTCTAGTGCTTTGCAA 1080
Query 1099 GAATCATCACTTGTTGGAATTTCTCACCAGGCTACTCACCAGAAACAGGATGCGAACGTA 1158
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GAACCATCACTTGTTGGAATTTCTCACCAGGCTACTCACCAGAAACAGGATGCGAACGTA 1140
Query 1159 CTTGATAGAAGGGTTCTTGTGTCACACACATAACGCGTCATGGCACACACTACACAACAT 1218
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1141 CTTGATAGAAGGGTTCTTGTGTCACACACACAACGCGTCGTGGCACACACTACACAACAT 1200
Query 1219 CATTTTCGGATCGGGGAGCAAAGTAGAGGCTTATTTGGACCATGTCCGTGACAACGTGGA 1278
||| ||||| ||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1201 CATCTTCGGGTCGGGGAGCAAAGTAGAGGCTTACCTAGACCATGTCCGTGACAACGTGGA 1260
Query 1279 CTGTGAGGTCGCAGTCTTCCACGGCGGTAGGGACGAGCTGATCCCCGTGGAGTGCAGCTA 1338
|||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1261 CTGTGAGGTCACAGTCTTCCACGGCGGTAGGGACGAGCTGATACCCGTCGAGTGCAGCTA 1320
Query 1339 CGGCGTCAAGAGGAAAGTGCCACGTGCAAGGATCCACGTCGTCCCCGACAAAGACCACAT 1398
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1321 CGGCGTCAAGAGGAAAGTGCCACGTGCCAGGATCCACGTCGTTCCCGACAAAGACCACAT 1380
Query 1399 CACCATTGTTGTTGGGAGGCAGAAGGAGTTCGCTCGTGAGCTTGAGCTCATTTGGCGCAG 1458
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1381 CACCATTGTTGTTGGGAGGCAGAAGGAGTTCGCTCGTGAGCTTGAGCTCATTTGGCACAG 1440
Query 1459 ATCCACTACTCCTCAACTTCATTCAATAAATTAACCCTTCTTTATTTTAAGCTAAGTATA 1518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 ATCCACTACTCCTCAACTTCATTCAATAAATTAACCCTTCTTTATTTTAAGCTAAGTATA 1500
Query 1519 TATATAT-TA-AT-A---CCAACCACTATTATTCAAACCATCATTTTATACCCATTCACT 1572
||||||| || || | ||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1501 TATATATATATATTAATACCAACCACTATTATTCAAATCATCATTT-ATACCCATTCACT 1559
Query 1573 TTTGCATATTTCGGTGACTCCTATGTAGaaa-aaaaaaaaa-----CAGAACATGTTTCT 1626
||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1560 TTTGCTTATTTCGGTGACTCCTATGTAGAAAGAAAAAAAAAAAAAACAGAACATGTTTCT 1619
Query 1627 TTTGTGGTTGCCATTTCATTATGATTTCGAATTTTG 1662
|||||||| | |||||||||||||||| ||||||||
Sbjct 1620 TTTGTGGTCGGCATTTCATTATGATTTTGAATTTTG 1655
> Ahg337911 jgi|Araly1|337911|fgenesh1_pg.C_scaffold_2000010
Length=579
Score = 909 bits (492), Expect = 0.0
Identities = 532/552 (96%), Gaps = 0/552 (0%)
Strand=Plus/Plus
Query 60 CCACAAGACTCAAACTCCACAGCATGGGATTCTCACGGTCGCTCAACCGCACCGTGGGCG 119
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 8 CCACAAGACTCAAACTCCACAGCATGGGATTCTCACGGTGGCTCAACCGCACCGTGGGCT 67
Query 120 TCTTCGTCTTCTTCATCCTCGACATTGTTGATTTCCTGCTTTGCTTTACCTACAAGACTC 179
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 68 TCTTCGTCTTCTTCATCCTCGACATTGTGGATTTCTTGCTTTGCTTTACCTACAAGACTC 127
Query 180 TTGATTTCTTCTTCGAGTCCGAGTGGAAACCCTGCTACTGCTGTCCGCCGCCCGAGGCCA 239
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 128 TTGATTTCTTCTTCGAGTCAGAGTGGAAACCCTGCTACTGCTGTCCGCCGCCTGAGGCCA 187
Query 240 AACCAATCTCGGCTGGAGGGAACAGAGGCGGTAAGATGATAGTGTCGGAAAGATCAGGAG 299
|||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 188 AACCAATCGCGGCTGGAGGGAGCAGAGTCGGTAAGATGATAGTGTCGGAAAGATCAGGAG 247
Query 300 ACTACTCGAAGGTGGTCTCACTCACAAGGACAAAGATCTATCTGGATGAGATCTCCGACA 359
| ||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 248 AGTACTCGAAGGTAGTCTCACTCACAAGGACAAAGATCCATCTGGATGAGATCTCTGACA 307
Query 360 CACTCTACTCTCGCCCTTCACTCCTCACCAAGCTCACTAAGCTGGTGAAGTGCTTCAAGA 419
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 308 CACTCTACTCACGCCCTTCACTCCTCACCAGGCTCACTAAGCTGGTGAAGTGCTTCAAGA 367
Query 420 AAGATGTTGTTAAATGCTGTGATGAGTCCAAGAAGAGATCACCGTCAACTAAAAAGACAT 479
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 AAGATGTTGTGAAATGTTGTGATGAGTCCAAGAAGAGATCACCGTCAACTAAAAAGACAT 427
Query 480 TACTCACTGTCAACTCCACGGTGGTCGAGAAGTTGCAAAGAACACCAAGATGGTCTGATT 539
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 428 TACTCACTGTGAACTCCACGGTGGTCGAGAAGTTGCGAAGAACACCAAGATGGTCTGATT 487
Query 540 GCCATTGCACTTTCTGCACTTCTTGGCTTTCCTCTTCCAACCAATCTCTCTTTGTCAATG 599
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 488 GCCATTGCACTTTCTGCACTTCTTGGCTTTCCTCTTCCAACCATTCTCTCTTTGTCAATG 547
Query 600 TCCAACAGCCCA 611
||||||||||||
Sbjct 548 TCCAACAGCCCA 559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62315640820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5