BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64680.1
Length=1142
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474875 jgi|Araly1|474875|fgenesh2_kg.2__5__AT1G64680.1 1749 0.0
> Ahg474875 jgi|Araly1|474875|fgenesh2_kg.2__5__AT1G64680.1
Length=1083
Score = 1749 bits (947), Expect = 0.0
Identities = 1040/1085 (96%), Gaps = 6/1085 (1%)
Strand=Plus/Plus
Query 1 GATGGTGGTAGGGAAGAAGAGCAACGAGGGCGAGAGATA---TCTTCTTATCCATGGCGG 57
||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1 GATGGTGGTAGGGAAAAAGAGCAAAGAGGGCGAGAGATATCTTCTTCTTATCCATGGCGG 60
Query 58 CTATTGCTAGTCTGCAAGCAGTTAATCTCACATTTAGGCGACGTAGCACTCGATGTGGAA 117
||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| |
Sbjct 61 CTATTGCTAGTTTGCAAGCAGTTAATCTCACACTTAGGCGACGTGGCACTCGATGTGGGA 120
Query 118 TTGCTGAGCCGAGCGGAGAGCCAGCTCCGATGGGGCTGAAGACTAGATACGAGGATGGGC 177
|||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 121 TTGCGGAGCCGAGCGGAGAGCCAGCTCCAATGGGGCTGAAGACTAGATACGACGATGGGT 180
Query 178 TGGTGGAGAGAGTGTTCATGGGTCTCTTCGCGAGGAAGATGGACAAGTTCGGGTCGAAGA 237
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 181 TGGTGGAGAGAGTGTTCATGGGCCTGTTCGCGAGGAAGATGGACAAGTTCGGGTCGAAGA 240
Query 238 AGAAGAAGGACACGAAGGAGAAGGGTTTTTGGGAGTACGATTACGAGAGCTTCGTGGAGG 297
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 AGAAGAAGGAAACGAAGGAGAAGGGTTATTGGGAGTACGATTACGAGAGCTTCGTGGAGG 300
Query 298 TGTCAAAGAGAGTGATGCAGGGACGGTCCAGAGTGCAGCAGCAAGAGGCCGTGAGGGAGG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGTCAAAGAGAGTGATGCAGGGACGGTCCAGAGTGCAGCAGCAAGAGGCCGTGAGGGAGG 360
Query 358 TTCTTCTCTCTATGCTGCCTCCTGGTGCTCCTGAACAGTTTAGGAAATTGTTCCCACCAA 417
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 361 TTCTTCTCTCTATGCTGCCTCCTGGTGCTCCTCAACAGTTTAGAAAATTGTTCCCACCAA 420
Query 418 CGAAATGGGCTGCAGAGTTCAATGCCGCTCTTACAGTGCCTTTCTTTCACTGGTTGGTTG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CGAAATGGGCTGCAGAGTTCAATGCCGCTCTTACAGTGCCTTTCTTTCACTGGTTGGTTG 480
Query 478 GTCCATCTCAGGTCATAGAAGTGGAAGTGAATGGTGTGAAACAGAGAAGTGGAGTTCGTA 537
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTCCTTCTCAGGTCATAGAAGTGGAAGTGAATGGTGTGAAACAGAGAAGTGGAGTTCGTA 540
Query 538 TCAAGAAATGCAGGTATCTGGAGAACAGTGGGTGTGTAGGAATGTGTGTGAATATGTGCA 597
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TAAAGAAATGCAGGTATTTGGAGAACAGTGGGTGTGTAGGAATGTGTGTGAATATGTGCA 600
Query 598 AGATTCCAACCCAAGATTTCTTCACCAATGAGTTTGGCCTCCCACTCACCATGAACCCAA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGATTCCAACCCAAGATTTCTTCACCAATGAGTTTGGCCTCCCACTCACCATGAACCCAA 660
Query 658 ATTATGAAGACATGAGCTGCGAGATGATATACGGGCAAGCACCTCCGGCCTTTGAGGAGG 717
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 661 ATTTTGAAGACATGAGCTGCGAGATGATATACGGGCAAGCGCCTCCGGCCTTTGAGGAGG 720
Query 718 ATGTAGCCACCAAGCAACCTTGTCTAGCAGATATATGTTCTATGTCGAATCCAAGCTCCC 777
||||||||||||| ||||||||||||||||| |||||||||||||| | |||||||||||
Sbjct 721 ATGTAGCCACCAAACAACCTTGTCTAGCAGACATATGTTCTATGTCCACTCCAAGCTCCC 780
Query 778 CAATCTGCCCTAAACTAGAGGCATGAGTGGAGTGGATCAGCAGCCACTTCTTTGACGGGA 837
||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct 781 CAATCTGCCCTAAACTAGAGGCATGAGTGGATTGGATCAGCAGCCACTTCTTTTATGGGA 840
Query 838 TGTGCAATTTCCAAGCGATATACATACtttttttCTTTTCCAAACACATACATTACATAT 897
||||||| ||||||| |||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct 841 TGTGCAACTTCCAAGAGATATACATACTTTGTTT-TTT-CCAAACACATACATTACATAT 898
Query 898 AAAAGACAGTTGTGAAGACGAGTTAGTGTTCTTTGTTACTATTCTGGTTGGGTTGTGTAA 957
|||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||
Sbjct 899 AAAAGACAGTTGTGAAGACGAGTTAGTGTTCTGTGTTACTATTTTCGTTGGGTTGTGTAA 958
Query 958 AGTATACGAT-AATACACTTGAGCTTACTCATCTTCTTTATGTTTTAAGTTTGAACTCGC 1016
|||||||||| |||||||||||| ||||||||||||||| |||| || ||||||||||||
Sbjct 959 AGTATACGATTAATACACTTGAGATTACTCATCTTCTTTGTGTTCTATGTTTGAACTCGC 1018
Query 1017 CATGTTGGTTATAACTTGGATCTCAAGTGTTACTTGCAGTTTGTATTGTAATATAAAACC 1076
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CATGCTGGTTATAACTTGGATCTCAAGTGTTACTTGCAGTTTGTATTGTAATATAAAACC 1078
Query 1077 AAAAA 1081
|||||
Sbjct 1079 AAAAA 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42583298289
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5