BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64690.1
Length=1144
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924446 jgi|Araly1|924446|scaffold_200007.1 1421 0.0
> Ahg924446 jgi|Araly1|924446|scaffold_200007.1
Length=865
Score = 1421 bits (769), Expect = 0.0
Identities = 827/855 (97%), Gaps = 3/855 (0%)
Strand=Plus/Plus
Query 20 AAGGCCAACCAAAAAGATGAAGGATATGAAGATGCAGAGCAGCCCTGAAACGATGATGAC 79
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 5 AAGGCCAAAGAAAAAGATGAAGGATATGAAGATGCAGAGCAGCTCTGAAACGATGATGAC 64
Query 80 CAGAATCCCCACTCCAGATCCTCACAGTACCGGTGTACGAGAAGATGCAATGGACTCAGT 139
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 65 CAGAATCCCCACTCCAGATCCTCACAATACCGGTGTACGAGAAGATGCAATGGACACAGT 124
Query 140 CTGCAAACCCTGGAAGCTTTATGAAAATCCATACTACTGCTCTTCTCAGTCTCAACAGCA 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 CTGCAAACCCTGGAAGCTTTATGAAAATCCATACTACTGCTCTTCTCAGTCTCAACAGCA 184
Query 200 TCAACACCAACGCAAGGCATTTATTTGGGATCTGAATTTCATAAAGGTGTTCATGGAATC 259
||| ||||||||||||||||||||||||||||| || ||||||||| | |||||||||||
Sbjct 185 TCAGCACCAACGCAAGGCATTTATTTGGGATCTAAACTTCATAAAGATCTTCATGGAATC 244
Query 260 TGAACTAGGAAAAGCTCAAGACGAGATCAAGGAATTGAAGGCAGAACTGGACTATGAGAG 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 TGAACTAGGAAAAGCTCAAGACGAGATCAAGGAATTGAAGGCAGAACTGGACTATGAGAG 304
Query 320 AAAAGCTCGAAGACGGGCAGAGCTGATGATCAAGAAGCTGGCTAAAGATGTGGAGGAGGA 379
||||||||||| || ||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 305 GAAAGCTCGAAGGCGCGCAGAGCTGATGAACAAGAGGCTGGCTAAAGATGTGGAGGAGGA 364
Query 380 GAGAATGGCTAGAGAAGCGGAGGAGATGCAAAACAAGCGGCTCTTCAAAGAGTTATCGTC 439
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 GAGAATGGCTAGAGTAGCGGAGGAGATGCAAAACAAGCGGCTCTTCAAAGAGTTATCGTC 424
Query 440 TGAGAAGTCAGAGATGGTTCGGATGAAACgagatcttgaagaagagagacagatgcacag 499
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 425 TGAGAAGTCAGAGATGGTTCGGATGAAACGCGATCTTGAAGAAGAGAGACAGATGCACAG 484
Query 500 gttggcagaggttttgagagaagagagagttcagaTGAAGCTGATGGATGCAAGGCTTTT 559
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 485 GTTAGCAGAGGTTTTGAGAGAAGAGAGACTTCAGATGAAGCTGATGGATGCAAGGCTTTT 544
Query 560 CTTGGAGGAGAAGCTATCTGAATTAGAGGAAGCTAATAGACAAGGAGAGAGGGAGAGGAA 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 CTTGGAGGAGAAGCTATCTGAATTAGAGGAAGCTAATAGACAAGGAGAGAGGGAGAGGAA 604
Query 620 TAGGATGATGAAACCTAAGATATTGGAGAGAGCGTGTAGCTCACCGGCTAGGAGGAGGTG 679
||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| ||
Sbjct 605 TAGGATGATGAAACCAAAGATACTGGAGAGAGCCTGTAGCTCACCGGCTAGGAGGAGCTG 664
Query 680 CGAGAATCCGCAAATAAAGAGAGGAATCAATCCGTTCCCAAGAGTGATGAGAGCAATAAG 739
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 CGAGAATCCACAAATAAAGAGAGGAATCAATCCGTTCCCAAGAGTGATGAGAGCAATAAG 724
Query 740 ATCAAAGAGTGAGAAATGGGGTTCAAAGCTGGAGTGCCAAAAGGTTCAGCTCAAAATTCT 799
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 725 ATCAAAGAGTGAGAAATGGGGTTCAAAGCTGGAGTGCCAAAAGGTTCAGCTAAAAATTCT 784
Query 800 GCTCAGACAAAAGACCACCCCAAGATGTActcctcttctctcctctcctcctcct--T-G 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 785 GCTCAGACAAAAGACCACCCCAAGATGTACTCCTCTTCTCTCCTCTCCTCCTCCTCCTTG 844
Query 857 ATACTGTATGCTTGT 871
|||||||||||||||
Sbjct 845 ATACTGTATGCTTGT 859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42659544123
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5