BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G64690.1 Length=1144 Score E Sequences producing significant alignments: (Bits) Value Ahg924446 jgi|Araly1|924446|scaffold_200007.1 1421 0.0 > Ahg924446 jgi|Araly1|924446|scaffold_200007.1 Length=865 Score = 1421 bits (769), Expect = 0.0 Identities = 827/855 (97%), Gaps = 3/855 (0%) Strand=Plus/Plus Query 20 AAGGCCAACCAAAAAGATGAAGGATATGAAGATGCAGAGCAGCCCTGAAACGATGATGAC 79 |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 5 AAGGCCAAAGAAAAAGATGAAGGATATGAAGATGCAGAGCAGCTCTGAAACGATGATGAC 64 Query 80 CAGAATCCCCACTCCAGATCCTCACAGTACCGGTGTACGAGAAGATGCAATGGACTCAGT 139 |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 65 CAGAATCCCCACTCCAGATCCTCACAATACCGGTGTACGAGAAGATGCAATGGACACAGT 124 Query 140 CTGCAAACCCTGGAAGCTTTATGAAAATCCATACTACTGCTCTTCTCAGTCTCAACAGCA 199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 125 CTGCAAACCCTGGAAGCTTTATGAAAATCCATACTACTGCTCTTCTCAGTCTCAACAGCA 184 Query 200 TCAACACCAACGCAAGGCATTTATTTGGGATCTGAATTTCATAAAGGTGTTCATGGAATC 259 ||| ||||||||||||||||||||||||||||| || ||||||||| | ||||||||||| Sbjct 185 TCAGCACCAACGCAAGGCATTTATTTGGGATCTAAACTTCATAAAGATCTTCATGGAATC 244 Query 260 TGAACTAGGAAAAGCTCAAGACGAGATCAAGGAATTGAAGGCAGAACTGGACTATGAGAG 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 245 TGAACTAGGAAAAGCTCAAGACGAGATCAAGGAATTGAAGGCAGAACTGGACTATGAGAG 304 Query 320 AAAAGCTCGAAGACGGGCAGAGCTGATGATCAAGAAGCTGGCTAAAGATGTGGAGGAGGA 379 ||||||||||| || ||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 305 GAAAGCTCGAAGGCGCGCAGAGCTGATGAACAAGAGGCTGGCTAAAGATGTGGAGGAGGA 364 Query 380 GAGAATGGCTAGAGAAGCGGAGGAGATGCAAAACAAGCGGCTCTTCAAAGAGTTATCGTC 439 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 365 GAGAATGGCTAGAGTAGCGGAGGAGATGCAAAACAAGCGGCTCTTCAAAGAGTTATCGTC 424 Query 440 TGAGAAGTCAGAGATGGTTCGGATGAAACgagatcttgaagaagagagacagatgcacag 499 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 425 TGAGAAGTCAGAGATGGTTCGGATGAAACGCGATCTTGAAGAAGAGAGACAGATGCACAG 484 Query 500 gttggcagaggttttgagagaagagagagttcagaTGAAGCTGATGGATGCAAGGCTTTT 559 ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 485 GTTAGCAGAGGTTTTGAGAGAAGAGAGACTTCAGATGAAGCTGATGGATGCAAGGCTTTT 544 Query 560 CTTGGAGGAGAAGCTATCTGAATTAGAGGAAGCTAATAGACAAGGAGAGAGGGAGAGGAA 619 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 545 CTTGGAGGAGAAGCTATCTGAATTAGAGGAAGCTAATAGACAAGGAGAGAGGGAGAGGAA 604 Query 620 TAGGATGATGAAACCTAAGATATTGGAGAGAGCGTGTAGCTCACCGGCTAGGAGGAGGTG 679 ||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| || Sbjct 605 TAGGATGATGAAACCAAAGATACTGGAGAGAGCCTGTAGCTCACCGGCTAGGAGGAGCTG 664 Query 680 CGAGAATCCGCAAATAAAGAGAGGAATCAATCCGTTCCCAAGAGTGATGAGAGCAATAAG 739 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 665 CGAGAATCCACAAATAAAGAGAGGAATCAATCCGTTCCCAAGAGTGATGAGAGCAATAAG 724 Query 740 ATCAAAGAGTGAGAAATGGGGTTCAAAGCTGGAGTGCCAAAAGGTTCAGCTCAAAATTCT 799 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 725 ATCAAAGAGTGAGAAATGGGGTTCAAAGCTGGAGTGCCAAAAGGTTCAGCTAAAAATTCT 784 Query 800 GCTCAGACAAAAGACCACCCCAAGATGTActcctcttctctcctctcctcctcct--T-G 856 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 785 GCTCAGACAAAAGACCACCCCAAGATGTACTCCTCTTCTCTCCTCTCCTCCTCCTCCTTG 844 Query 857 ATACTGTATGCTTGT 871 ||||||||||||||| Sbjct 845 ATACTGTATGCTTGT 859 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42659544123 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5