BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64700.1
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474873 jgi|Araly1|474873|fgenesh2_kg.2__3__AT1G64700.1 1199 0.0
> Ahg474873 jgi|Araly1|474873|fgenesh2_kg.2__3__AT1G64700.1
Length=768
Score = 1199 bits (649), Expect = 0.0
Identities = 730/768 (95%), Gaps = 9/768 (1%)
Strand=Plus/Plus
Query 1 AGACTATAGAGCGAGAGAGCATGGAGTAGGCAAGAAGAGCACACAAGTCAAGCATGGGAA 60
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 AGACTATAGAGAGAGAGAGCATGGAGTAGGCAAGAAGAGCACACAAACCAAGCATGGGAA 60
Query 61 ACTGTTTATTCGGAGGGTTAGGCGACGAAGAGGAAGACTTATTGATCAAAGTCATAAAAT 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 ACTGTTTATTCGGAGGGTTAGGCGACGAAGAGGAAGACTTATTAATCAAAGTCATAAAAT 120
Query 121 CCGACGGTGGAGTTCTTGAGTTCTACTCCCCCGTTACCGCGGGCTTTGTCTCCCACGGAT 180
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||
Sbjct 121 CCGACGGTGGAGTTCTTGAGTTCTACTCCCCCGTCACCGCGGGCTACGTCTCCCACGAAT 180
Query 181 TCTCAGGCCATGCTCTTTTCTCGGCTGTTGATCTCCTCTGGAAACCCCTGGCTCACGACC 240
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 181 TCTCAGGCCATGCTCTTTTCTCGGCTCTTGATCTCCTCTGGAAACCCCTGCCTCACGACC 240
Query 241 ACCTCCTCGTGCCCGGTCAGTCCTACTATCTCTTTCCCAATATTGTCTCCGACGAGTTGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACCTCCTCGTGCCCGGTCAGTCCTACTATCTCTTTCCCAATATTGTCTCCGACGAGTTGA 300
Query 301 AGACTTTTGTGGGAAGCTGCCACGTGAGATCCAACAGCGAGTCCTTGTCTGCGATAACTC 360
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 301 AGACTTTTGTGGGAAGCTGCCACGTGAGATCCAACAGCGAGTCCTTGCCAGCGATAACTC 360
Query 361 CGTACAGAATGTCTCTGGATTACAACCACAGGGTGTTGAAGCGATCATACACGGACGTTT 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 CGTACAGAATGTCTCTGGATTACAACCACAGGGTGTTGAAGAGATCATACACGGACGTTT 420
Query 421 TTTCAAGAAACAGCCACATAAGGACCCGACAAAAGGAGAAGAAAACGAGGAGGAGACGTA 480
| |||||||||| ||||| |||||||||||| ||||||||||| ||||||||||||||||
Sbjct 421 TCTCAAGAAACAACCACACAAGGACCCGACAGAAGGAGAAGAAGACGAGGAGGAGACGTA 480
Query 481 CGAGCAGCAAAGGTGCAATATGGAAAGTGAATCTGATCATAAACACTGAAGAGCTGTTAC 540
||| ||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 481 CGATCAGCAAAGGTGGAATTTGGAAAGTGAAGCTGATCATAAACACTGAAGAGCTGTTAC 540
Query 541 AGATTCTGTCTGAAGATGGAAGAACAAATGAGCTAATAGAGAGTGTGAGAGCCGTAGCCA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 541 AGATTCTGTCTGAAGATGGAAGAACAAATGAGCTAATAGAGAGTGTGAGAGCCGTGGCCA 600
Query 601 AGGGTGAAA-C------A--TCGAGCATCACAAGTAGTTCGTCCGAGAATTTCTTGTCGG 651
||||||||| | | ||||||||||||||| |||||||||||||| |||||||||
Sbjct 601 AGGGTGAAAACGTCGTCACATCGAGCATCACAAGTGGTTCGTCCGAGAATGTCTTGTCGG 660
Query 652 TGGTACAGACCTAGAATTTGATTTCTGGTAGATTTTAATTCCCTATATTTAAATGTGTGG 711
||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGGTACATACCTAGATTTTTATTTCTGGTAGATTTTAATTCCCTATATTTAAATGTGTGG 720
Query 712 TTAATGTTATAACTTATAAGTAATGAAGTATGTTATCTTGCACCAATT 759
||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 721 TTAATGTTATAACTTATAAGTAATGAAGTCTGTTATCTTGCACCAATT 768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29011539837
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5