BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64710.1
Length=1523
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314969 jgi|Araly1|314969|fgenesh1_pm.C_scaffold_2000002 1772 0.0
Ahg337905 jgi|Araly1|337905|fgenesh1_pg.C_scaffold_2000004 806 0.0
> Ahg314969 jgi|Araly1|314969|fgenesh1_pm.C_scaffold_2000002
Length=1164
Score = 1772 bits (959), Expect = 0.0
Identities = 1098/1162 (94%), Gaps = 21/1162 (2%)
Strand=Plus/Plus
Query 142 ATGGAAACACAAGGCAAAGTAATCACTTGCAAAGCTGCTGTGGCATGGGGAGCTGGAGAG 201
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGAAACACAAGGCAAAGTAATCACTTGCAGAGCTGCTGTGGCATGGGGAGCTGGAGAA 60
Query 202 CCTCTAGTAATGGAAGATGTAAAAGTGGATCCTCCTCAAAGATTGGAAGTGAGAATTCGA 261
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 CCTCTAGTGATGGAAGATGTAAAAGTGGATCCTCCTCAAAGATTGGAAGTGAGACTTCGA 120
Query 262 ATCCTCTTCACTTCCATCTGTCACACTGATCTCAGCGCATGGAAAGGCGAGAACGAGGCT 321
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 121 ATCCTCTTCACTTCCATCTGTCACACTGATCTTAGCGCATGGAAAGGCGAGAACGAGTCT 180
Query 322 CAGCGAGCATACCCTCGAATCCTTGGCCATGAGGCAGCAGGGATAGTGGAGAGCGTAGGG 381
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 CAGCGAGCATACCCTCGAATCCTTGGCCATGAGGCGGCAGGGATAGTGGAGAGCGTAGGG 240
Query 382 GAAGGTGTGGAAGAGATGATGGCAGGAGATCATGTGCTCCCTATTTTCACAGGAGAGTGT 441
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAGGAGTGGAAGAGATGAAGGCAGGAGATCATGTGCTCCCTATTTTCACAGGAGAGTGT 300
Query 442 GGAGACTGCAGAGTGTGCAAGCGAGACGGAGCCAATCTGTGCGAGAGATTCCGAGTGGAT 501
||||| |||||||| ||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 301 GGAGATTGCAGAGTCTGCAAGCAAGACGAAGCCAATCTGTGCGAGAGATTCCGAGTGGAT 360
Query 502 CCGATGAAGAAGGTGATGGTAACCGATGGAAAGACCAGATTCTTCACCAGCAAAGACAAC 561
||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||
Sbjct 361 CCGATGAAGAAGGTGATGGCAACCGATGGCAAGACCAGATTCTTCACAAGCAAAGACAAC 420
Query 562 AAACCAATCTACCATTTTCTCAACACATCCACCTTCTCCGAGTACACGGTCATAGACTCG 621
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAACCCATCTACCATTTTCTCAACACATCCACCTTCTCCGAGTACACGGTCATAGACTCG 480
Query 622 GCCTGCGTGCTCAAGGTGGACCCTCTGTTTCCTCTGGAGAAGATAAGCCTCCTCAGCTGC 681
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCTTGCGTGCTCAAGGTGAACCCTCTGTTTCCTCTGGAGAAGATAAGCCTCCTCAGCTGC 540
Query 682 GGTGTCTCCAC------------------T---GGAGTCGGTGCGGCGTGGAATGTGGCT 720
||||||||||| | |||||||||||||||||||||||||||
Sbjct 541 GGTGTCTCCACTGATAAGTGTTTATGGAATGAAGGAGTCGGTGCGGCGTGGAATGTGGCT 600
Query 721 GATATTCAACCTGCCTCCACCGTCGCTATTTTTGGACTTGGCGCTGTTGGACTTGCCGTG 780
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 601 GATATTCAACCTGGCTCCACCGTCGCTATATTTGGACTTGGCGCTGTTGGACTTGCCGTG 660
Query 781 GCTGAAGGTGCAAGAGCCAGAGGAGCCTCTAAAATCATTGGGATCGACATCAACCCTGAC 840
|||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 661 GCTGAAGGTGCAAGAGTCAGGGGAGCCTCTAAAATCATTGGGATCGACGTCAACCCTGAC 720
Query 841 AAGTTCCAACTAGGCAGAGAAGCAGGGATTAGTGAATTCATAAATCCAAAGGAGAGTGAC 900
||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 721 AAGTTCCCATTAGGCAGAGAAGCAGGGATCAGTGAATTCATAAATCCAAAGGAGAGTGAC 780
Query 901 AAGGCAGTTCATGAGAGAGTAATGGAGATAACAGAGGGAGGAGTGGAGTACAGCTTCGAG 960
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||
Sbjct 781 AAGGCAGTTCATGAGAGAGTAAGGGAGATAACAGAGGGAGGAGTGGAGTGCAGCTTTGAG 840
Query 961 TGTGCAGGAAGTATAGAAGCACTTAGAGAAGCCTTTCTGTCTACAAACTCAGGAGTGGGA 1020
||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 841 TGTGCGGGAAGCATAGAAGCACTTAGAGAAGCCTTTCTGTCTACTAACTCAGGAGTGGGA 900
Query 1021 GTGACTGTCATGCTGGGCGTTCACGCAAGCCCACAGCTTCTCCCTATCCATCCCATGGAG 1080
||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 901 GTGACAGTGTTGCTGGGCGTTCACGCAAGCCCACAGCTTCTTCCTATCCATCCCATGGAG 960
Query 1081 CTCTTCCAAGGCAGATCCATCACCGCCTCTGTTTTCGGAGGCTTCAAACCCAAAACCCAA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CTCTTCCAAGGCAGATCCATCACCGCCTCTGTTTTCGGAGGCTTCAAACCCAAAACCCAA 1020
Query 1141 TTACCCTTTTTCATCACCCAGTGCCTCCAAGGTCTTCTCAATCTCGATCTCTTCATCTCT 1200
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TTACCCTTTCTCATCACCCAATGCCTCCAAGGTCTTCTCAATCTCGATCTCTTCATCTCT 1080
Query 1201 CACCAGCTTCCCTTCCACGATATCAACGAAGCCATGCAGCTGCTTCACCAAGGCAAAGCT 1260
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1081 CACCAGCTTCCATTCCACGATATCAACAAAGCCATGCAGCTGCTTCACCAAGGCAAAGCT 1140
Query 1261 CTTCGTTGCCTTCTCCACCTCT 1282
||||||||||||||| |||||
Sbjct 1141 ATTCGTTGCCTTCTCCGCCTCT 1162
> Ahg337905 jgi|Araly1|337905|fgenesh1_pg.C_scaffold_2000004
Length=927
Score = 806 bits (436), Expect = 0.0
Identities = 482/505 (95%), Gaps = 0/505 (0%)
Strand=Plus/Plus
Query 778 GTGGCTGAAGGTGCAAGAGCCAGAGGAGCCTCTAAAATCATTGGGATCGACATCAACCCT 837
||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||
Sbjct 421 GTGGCTGAAGGTGCAAGAGTCAGGGGAGCCTCTAAAATCATTGGGATCGACGTCAACCCT 480
Query 838 GACAAGTTCCAACTAGGCAGAGAAGCAGGGATTAGTGAATTCATAAATCCAAAGGAGAGT 897
|||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 GACAAGTTCCCATTAGGCAGAGAAGCAGGGATCAGTGAATTCATAAATCCAAAGGAGAGT 540
Query 898 GACAAGGCAGTTCATGAGAGAGTAATGGAGATAACAGAGGGAGGAGTGGAGTACAGCTTC 957
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 541 GACAAGGCAGTTCATGAGAGAGTAAGGGAGATAACAGAGGGAGGAGTGGAGTGCAGCTTT 600
Query 958 GAGTGTGCAGGAAGTATAGAAGCACTTAGAGAAGCCTTTCTGTCTACAAACTCAGGAGTG 1017
|||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 GAGTGTGCGGGAAGCATAGAAGCACTTAGAGAAGCCTTTCTGTCTACTAACTCAGGAGTG 660
Query 1018 GGAGTGACTGTCATGCTGGGCGTTCACGCAAGCCCACAGCTTCTCCCTATCCATCCCATG 1077
|||||||| || ||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 661 GGAGTGACAGTGTTGCTGGGCGTTCACGCAAGCCCACAACTTCTTCCTATCCATCCCATG 720
Query 1078 GAGCTCTTCCAAGGCAGATCCATCACCGCCTCTGTTTTCGGAGGCTTCAAACCCAAAACC 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAGCTCTTCCAAGGCAGATCCATCACCGCCTCTGTTTTCGGAGGCTTCAAACCCAAAACC 780
Query 1138 CAATTACCCTTTTTCATCACCCAGTGCCTCCAAGGTCTTCTCAATCTCGATCTCTTCATC 1197
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 781 CAATTACCCTTTCTCATCACCCAATGCCTCCAAGGTCTTCTCAATCTCGATCTCTTCATC 840
Query 1198 TCTCACCAGCTTCCCTTCCACGATATCAACGAAGCCATGCAGCTGCTTCACCAAGGCAAA 1257
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 841 TCTCACCAGCTTCCATTCCACGATATCAACAAAGCCATGCAGCTGCTTCACCAAGGCAAA 900
Query 1258 GCTCTTCGTTGCCTTCTCCACCTCT 1282
||| ||||||||||||||| |||||
Sbjct 901 GCTATTCGTTGCCTTCTCCGCCTCT 925
Score = 616 bits (333), Expect = 2e-175
Identities = 365/381 (96%), Gaps = 0/381 (0%)
Strand=Plus/Plus
Query 397 ATGATGGCAGGAGATCATGTGCTCCCTATTTTCACAGGAGAGTGTGGAGACTGCAGAGTG 456
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGAAGGCAGGAGATCATGTGCTCCCTATTTTCACAGGAGAGTGTGGAGATTGCAGAGTC 60
Query 457 TGCAAGCGAGACGGAGCCAATCTGTGCGAGAGATTCCGAGTGGATCCGATGAAGAAGGTG 516
||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 TGCAAGCAAGACGAAGCCAATCTGTGCGAGAGATTCCGAGTAGATCCGATGAAGAAGGTG 120
Query 517 ATGGTAACCGATGGAAAGACCAGATTCTTCACCAGCAAAGACAACAAACCAATCTACCAT 576
||||||| ||||||||||||| ||||||||| ||||||||||||||||| |||||||||
Sbjct 121 ATGGTAATTGATGGAAAGACCAAATTCTTCACAAGCAAAGACAACAAACCCATCTACCAT 180
Query 577 TTTCTCAACACATCCACCTTCTCCGAGTACACGGTCATAGACTCGGCCTGCGTGCTCAAG 636
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 TTTCTCAACACATCCACCTTCTCCGAGTACACGGTCATAGACTCGGCTTGCGTGCTCAAG 240
Query 637 GTGGACCCTCTGTTTCCTCTGGAGAAGATAAGCCTCCTCAGCTGCGGTGTCTCCACTGGA 696
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 GTGAACCCTCTGTTTCCTCTGGAGATGATAAGCCTCCTCAGCTGCGGTGTCTCCACTGGA 300
Query 697 GTCGGTGCGGCGTGGAATGTGGCTGATATTCAACCTGCCTCCACCGTCGCTATTTTTGGA 756
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 301 GTCGGTGCGGCGTGGAATGTGGCTGATATTCAACCTGGCTCCACCGTCGCTATATTTGGA 360
Query 757 CTTGGCGCTGTTGGACTTGCC 777
|||||||||||||||||||||
Sbjct 361 CTTGGCGCTGTTGGACTTGCC 381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57021096765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5