BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64720.1
Length=1577
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924442 jgi|Araly1|924442|scaffold_200003.1 1677 0.0
> Ahg924442 jgi|Araly1|924442|scaffold_200003.1
Length=1192
Score = 1677 bits (908), Expect = 0.0
Identities = 1075/1152 (93%), Gaps = 25/1152 (2%)
Strand=Plus/Plus
Query 127 CCTCGGCTTCTCTGACCTTATAGTTTTTGTTGCGCCACTCTGGATTGCTGTGGCTGCCGG 186
||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||
Sbjct 53 CCTCGGCTTCTCTGACCTTTTAGTATTTGTTGCGCCACTCTGGATTGCTGTCGCTGCCGG 112
Query 187 TGTTTTGGTTGGTTGGGTTTGGAGGCCCAAGTGGGCTTATCTCGATTCTAAA--C-TCTT 243
||||||||||||||| ||||||| |||||||||||||||||||| | ||| | ||||
Sbjct 113 GGTTTTGGTTGGTTGGTTTTGGAGACCCAAGTGGGCTTATCTCGACACAAAACCCTTCTT 172
Query 244 GTCC-A--ATTCACCTAAATTCCTCAATCTTCAGCTTCCCACTTCCATCCTCAAAACTTC 300
||| | |||||||||||| || || |||||||||||||||||||||| || ||
Sbjct 173 ATCCGATTCTTCACCTAAATT-CT---TC--AAGCTTCCCACTTCCATCCTCAAGACCTC 226
Query 301 TTCT--CA-CC--ACGTTAACCCCAGCCTTTCTTCCAAAGAGAAAACTGGGTTTGTAACG 355
|||| || || | || |||||| | | | ||||||||| |||||||||| |||
Sbjct 227 TTCTCACAGCCTTTC-TTCTCCCCAGGC-TGATGAGAAAGAGAAATCTGGGTTTGTTACG 284
Query 356 GACGATGATTTTAGGCATCTATGGAAGTTGGTTGAGGTCAAAGATGGCGGTCCTTG-TTG 414
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 285 GACGATGATTTTAGGCATCTATGGAAGTTGGTTGAGGTCAAAGATGGCGG-CCCTGCTTG 343
Query 415 GATTCAAATGATGGACCGATCAACCCCAACCTTCTCATATCAAGCTTGGAGGCGAGATCC 474
|||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 344 GATTCAGATGATGGACCGATCAACTCCTACCTTCTCATATCAAGCTTGGAGGCGAGATCC 403
Query 475 TGAGAATGGGCCTCCCCAGTACCGTAGCAGAACTGTGTTTGAGGATGCCACTCCCGAGAT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 TGAGAATGGGCCTCCCCAGTACCGTAGCAGAACTGTGTTTGAGGATGCCACTCCCGAGAT 463
Query 535 GGTCAGGGACTTCTTTTGGGATGATGAGTTCCGTTCCAAGTGGGATGATATGCTTTTGTA 594
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 GGTGAGGGACTTCTTTTGGGATGATGAGTTCCGTTCCAAGTGGGATGATATGCTTTTGTA 523
Query 595 TTCTTCTACTCTCGAGCGTTGCAAGGA-CACGGGCACTATGGTTGTGCAATGGGTGCGAA 653
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
Sbjct 524 TTCTTCTACTCTCGAGCGTTGCAA-GAGCACGGGCACTATGGTTGTGCAATGGGTGCGCA 582
Query 654 AGTTCCCCTTCTTTTGTAGCGACAGGGAGTATATTATAGGCCGTCGTATATGGGATGCTG 713
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 583 AGTTCCCTTTCTTTTGTAGCGACAGGGAGTATATTATAGGCCGTCGAATATGGGATGCTG 642
Query 714 GCCGAGTCTTTTACTGCATTACTAAGGGAGTACAATACCCGTCTGTACCTAGACAAAACA 773
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 643 GCCGAGTCTTTTACTGCGTTACAAAGGGAGTACAATACCCGTCTGTACCTAGACAAAACA 702
Query 774 AGCCAAGGCGAGTCGACTTGTACTATTCAAGCTGGTGTATCCGTGCAGTTGAATCAAAAA 833
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 703 AGCCAAGGCGAGTCGACTTATACTATTCAAGCTGGTGTATCCGTGCAGTTGAATCAAAAA 762
Query 834 GAGGCGATGGTGAGATGACATCATGTGAGGTACTACTATTTCACCATGAAGATATGGGAA 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 GAGGCGATGGTGAGATGACATCATGTGAGGTACTACTATTTCACCATGAAGATATGGGAA 822
Query 894 TACCGTGGGAGATTGCAAAGCTTGGGGTGAGACAGGGTATGTGGGGTGCAGTCAAGAAGA 953
|||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |
Sbjct 823 TACCGTGGGAGATTGCAAAGCTCGGGGTGAGACAGGGGATGTGGGGTGCAGTGAAGAAAA 882
Query 954 TTGAGCCAGGCCTACGTGCATATCAGAGGGCTAAAGCAGCGGGAGCAGGTTTATCCCCGA 1013
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 883 TTGAGCCAGGCCTACGTGCATATCAGAGGGCCAAAGCAGCGGGAGCAGGTTTATCCCCAA 942
Query 1014 GTGCCATAATGGCTCACATCAACACCAAAGTGAGTGCAGAGGAGTTCATGAATGAGAGGG 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 GTGCCATAATGGCTCACATCAACACCAAAGTGAGTGCAGAGGAGTTCATGAATGAGAGGG 1002
Query 1074 GTTCGATAGCAGAGGTTACAGGAGACAAGCCGACGGGGAAAAACATACCAAAGATACTAG 1133
||||||||||||| |||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 1003 ATTCGATAGCAGAGATTACTGGAGAGAAGCCGACAGGGAAAAACATACCAAAGATACTAG 1062
Query 1134 TGGTAGGAGGGGCGATTGCACTTGCATGTACATTGGACAAAGGGCTGTTGACAAAGGCGG 1193
|||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
Sbjct 1063 TGGTGGGAGGGGCGATTGCCCTTGCATGTACACTGGACAAAGGGCTGTTGACAAAGGCAG 1122
Query 1194 TGATATTCGGAGTAGCCAGAAGATTTGCAAGAATGGGAAAAAGGATGTAGGAGAGAGTGT 1253
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1123 TGATATTCGGAGTAGCCAGAAGATTTGCAAGAATGGGGAAAAGGATGTAGGAGAG--TGT 1180
Query 1254 ACATGTAAGTAG 1265
||||||||||||
Sbjct 1181 ACATGTAAGTAG 1192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59077969995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5