BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64740.1
Length=1652
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475472 jgi|Araly1|475472|fgenesh2_kg.2__602__AT1G64740.1 2610 0.0
Ahg488873 jgi|Araly1|488873|fgenesh2_kg.6__2007__AT5G19780.1 1013 0.0
Ahg494557 jgi|Araly1|494557|fgenesh2_kg.8__373__AT1G50010.1 640 0.0
Ahg948572 jgi|Araly1|948572|scaffold_800459.1 302 7e-81
Ahg356572 jgi|Araly1|356572|fgenesh1_pg.C_scaffold_8000359 185 7e-46
> Ahg475472 jgi|Araly1|475472|fgenesh2_kg.2__602__AT1G64740.1
Length=1637
Score = 2610 bits (1413), Expect = 0.0
Identities = 1568/1643 (95%), Gaps = 9/1643 (1%)
Strand=Plus/Plus
Query 1 TTGTCCTTTCACATCTAAAAGCGGGAGAGCCAACAAAACAACCTTCTTCCTCGCGAAAAC 60
|||||||||||||||||||||||||||| ||||| ||||||| ||||||||| ||||||
Sbjct 1 TTGTCCTTTCACATCTAAAAGCGGGAGACCCAAC--AACAACCATCTTCCTCGTGAAAAC 58
Query 61 agagagaaagaggaagaagaagaagaagTCTCTGAGAAATTTTCGAACATGAGGGAGATC 120
||||||||||||||||||||| || ||| ||||||||| |||||||||||||||||||
Sbjct 59 AGAGAGAAAGAGGAAGAAGAA-CAG--GTCCCTGAGAAATATTCGAACATGAGGGAGATC 115
Query 121 ATTAGCATTCATATCGGACAAGCTGGTATTCAGGTCGGAAATTCTTGTTGGGAGCTTTAT 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 116 ATTAGCATTCATATCGGACAAGCTGGTATTCAGGTTGGAAATTCTTGTTGGGAGCTTTAT 175
Query 181 TGTCTCGAACATGGTATCCAACCCGATGGCACCATGCCCAGTGATAGTACTGTTGGTGCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 176 TGTCTCGAACATGGTATCCAACCCGATGGCACCATGCCCAGTGATAGTACTGTGGGTGTA 235
Query 241 TGTCATGATGCATTCAACACATTCTTTAGCGAGACAAGCTCAGGCCAACATGTGCCTCGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 236 TGTCATGATGCATTCAACACATTCTTTAGCGAGACAAGCTCAGGCCAACATGTTCCTCGG 295
Query 301 GCTGTGTTTCTTGATCTCGAACCAACCGTCATTGACGAAGTAAGAACCGGCACTTACAGA 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 296 GCTGTGTTTCTTGATCTCGAACCAACCGTCATTGATGAAGTAAGAACCGGCACTTACAGA 355
Query 361 CAGCTTTTCCATCCCGAGCAACTTATCTCTGGCAAAGAAGATGCAGCCAATAACTTTGCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CAGCTTTTCCATCCCGAGCAACTTATCTCTGGCAAAGAAGATGCAGCCAATAACTTTGCT 415
Query 421 AGAGGCCATTACACTGTTGGAAGGGAAATTGTTGACACCTGCCTTGAAAGGCTGAGGAAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AGAGGCCATTACACTGTTGGAAGGGAAATTGTTGACACCTGCCTTGAAAGGCTGAGGAAA 475
Query 481 TTGGCAGACAATTGCACAGGGTTACAAGGATTTTTGGTATTCAATGCTGTTGGGGGTGGA 540
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 476 TTGGCAGACAATTGCACAGGGTTACAAGGATTTTTGGTGTTTAATGCTGTTGGGGGTGGA 535
Query 541 ACAGGTTCTGGTTTGGGTTCTTTACTGTTGGAGCGCTTGTCCGTAGATTTTGGaaaaaaa 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 536 ACAGGTTCTGGTTTGGGTTCTTTACTGTTGGAGCGCTTGTCCGTAGATTTTGGAAAGAAA 595
Query 601 TCAAAACTCGGTTTCACCATCTACCCTTCTCCTCAGGTTTCTACAGCAGTTGTGGAGCCG 660
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 596 TCTAAACTCGGTTTCACCATATACCCTTCTCCTCAGGTTTCTACAGCAGTTGTAGAGCCA 655
Query 661 TATAACAGTGTTCTCTCGACTCATTCTCTTCTCGAACACACAGATGTTGTTGTTCTTTTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TATAACAGTGTTCTCTCGACTCATTCTCTTCTCGAACACACAGATGTTGTTGTTCTTTTG 715
Query 721 GACAATGAAGCCATATACGATATCTGCAGGAGATCTTTAGACATTGAGAGGCCTACATAC 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 716 GACAATGAAGCCATATACGATATCTGCAGGAGATCTTTAGACATTGAGAGGCCTACGTAC 775
Query 781 TCCAATTTGAACCGCTTGATCTCCCAAACCATCTCTTCGCTTACAACTTCTCTAAGATTT 840
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 776 ACCAATCTGAACCGCTTGATCTCCCAAACCATCTCTTCGCTTACAACTTCTCTGAGATTT 835
Query 841 GACGGTGCCATCAATGTGGACATCACCGAGTTCCAGACCAACCTTGTACCTTACCCTCGG 900
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 836 GACGGTGCCATCAACGTGGACATCACGGAGTTCCAGACCAACCTTGTACCTTACCCTCGG 895
Query 901 ATCCACTTCATGCTCTCCTCTTATGCACCTGTGATTTCATCTGCAAAGGCCTACCATGAG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 ATCCACTTCATGCTCTCCTCTTATGCACCTGTGATTTCATCTGCAAAGGCCTACCATGAG 955
Query 961 CAGTTTTCGGTCCCTGAGATCACGACTTCCGTCTTTGAACCCTCCAATATGATGGCTAAA 1020
||||| || |||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 956 CAGTTCTCAGTCCCTGAGATCACGACTTCTGTCTTTGAACCCTCCAATATGATGGCCAAA 1015
Query 1021 TGTGACCCTAGGCATGGCAAGTACATGGCTTGCTGTTTGATGTATCGTGGTGACGTTGTG 1080
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1016 TGTGACCCAAGGCATGGGAAGTACATGGCTTGCTGTTTGATGTATCGTGGTGATGTTGTG 1075
Query 1081 CCCAAGGATGTCAATACAGCCGTTGCTGCCATCAAAGCCAAACGAACAATTCAGTTTGTT 1140
|| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1076 CCTAAGGATGTCAATACAGCCGTTGCTGCCATCAAAACCAAGCGAACAATTCAGTTTGTT 1135
Query 1141 GACTGGTGCCCAACTGGATTCAAGTGCGGGATAAACTACCAGCCGCCTTCCGTTGTTCCA 1200
||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 1136 GACTGGTGCCCAACTGGATTCAAATGCGGAATAAACTACCAGCCGCCTTCAGTTGTTCCA 1195
Query 1201 GGTGGTGACCTGGCTAAGGTTCAACGAGCGGTTTGCATGATCAGCAATAATACTGCAGTT 1260
|||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1196 GGTGGTGACCTGGCGAAGGTTCAACGAGCAGTTTGCATGATCAGCAACAATACTGCAGTG 1255
Query 1261 GCTGAAGTGTTCTCACGTATAGACCATAAGTTTGATCTCATGTACTCCAAAAGAGCCTTT 1320
|| ||||||||||| || |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1256 GCGGAAGTGTTCTCTCGCATAGACCACAAGTTTGATCTCATGTACTCCAAAAGAGCATTT 1315
Query 1321 GTCCATTGGTATGTAGGAGAGGGTATGGAAGAAGGAGAGTTCTCTGAGGCTCGTGAGGAT 1380
||||||||||||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct 1316 GTCCATTGGTATGTAGGTGAAGGCATGGAAGAAGGAGAGTTCTCTGAGGCCCGTGAGGAT 1375
Query 1381 CTTGCTGCCCTCGAGAAAGATTATGAGGAAGTTGGTGGAGAAGGAGCGGAGGACGACGAC 1440
|||||||| || ||||||||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct 1376 CTTGCTGCTCTTGAGAAAGATTATGAGGAAGTTGGTGCAGAAGGAGCAGAGGATGACGAC 1435
Query 1441 GAAGAAGGCGATGAGTATTAGAAAGACACAAGAGTGTGTGTTCCCTTGTTTCTTTCTTGT 1500
|||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||
Sbjct 1436 GAAGAAGGCGATGAGTATTAGAAAGACACAAGAGTG-GTTTTCCATTGTTTCTTTCTTGT 1494
Query 1501 GA-AGTACAGTAATTATGTCTTTGTGAATGTGATCTCTACAGTTATTTTGTGATGTTT-A 1558
|| | ||||| || ||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1495 GACA-TACAGCAACTATGTCTATGTGAATGTGATCTCTACAGTTATTTTGTGATGTTTTA 1553
Query 1559 CGGGTCTCTCCCCTTTTATTTCTCATTTGTGTTTACTAAAGGATTGCATTTCTAGTGCAT 1618
|||||||||||||||||||||||||| ||||||| |||| ||||||||||| ||||||||
Sbjct 1554 CGGGTCTCTCCCCTTTTATTTCTCATGTGTGTTTGCTAATGGATTGCATTTATAGTGCAT 1613
Query 1619 CTCAATACATAGTTTGAAGGATT 1641
||||||||| |||||||||||||
Sbjct 1614 CTCAATACAAAGTTTGAAGGATT 1636
> Ahg488873 jgi|Araly1|488873|fgenesh2_kg.6__2007__AT5G19780.1
Length=1667
Score = 1013 bits (548), Expect = 0.0
Identities = 1104/1373 (80%), Gaps = 36/1373 (3%)
Strand=Plus/Plus
Query 105 GAACATGAGGGAGATCATTAGCATTCATATCGGACAAGCTGGTATTCAGGTCGGAAATTC 164
||| ||| | || ||||| ||||||||||||||||||||||| || |||||||| |||||
Sbjct 58 GAAGATGCGAGAAATCATAAGCATTCATATCGGACAAGCTGGGATCCAGGTCGGGAATTC 117
Query 165 TTGTTGGGAGCTTTATTGTCTCGAACATGGTATCCAACCCGATGGCACCATGCCCAGTGA 224
|| ||||||||||| |||||||||||||| ||||| ||||| || | ||||| |||||
Sbjct 118 GTGCTGGGAGCTTTACTGTCTCGAACATGGAATCCAGCCCGACGGAATGATGCCGAGTGA 177
Query 225 TAGTACTGTTGGTGCATG-TCATGATGCATTCAACACATTCTTTAGCGAGACAAGCT-CA 282
|| ||| ||||||| || || ||||| |||||||| |||||||||||||| | | |
Sbjct 178 TACTACAGTTGGTG-TTGCGCACGATGCGTTCAACACCTTCTTTAGCGAGAC-TGGTGCT 235
Query 283 GGCCAA-CATGTGCCTCGAGCTGTGTTTC-TTGATCTCGAACCAACCGTCATTGACGAAG 340
|| || ||||| ||| | ||||| ||| ||||||| || || || || || |||||||
Sbjct 236 GG-GAAGCATGTCCCTAGGGCTGT-CTTCGTTGATCTTGAGCCTACTGTTATCGACGAAG 293
Query 341 TAAGAACCGGCACTTACAGACAGCTTTTCCATCCCGAGCAACTTATCTCTGGCAAAGAAG 400
| | || || |||||| | |||||||||||||| ||||| || || || || |||||||
Sbjct 294 TTCGTACTGGTACTTACCGTCAGCTTTTCCATCCTGAGCAGCTCATTTCCGGGAAAGAAG 353
Query 401 ATGCAGCCAATAACTTTGCTAGAGGCCATTACACTGTTGGAAGGGAAATTGTTGACAC-C 459
|||| || || ||||| |||||||| |||||||||||||||| ||||||||| || |
Sbjct 354 ATGCTGCTAACAACTTCGCTAGAGGACATTACACTGTTGGAAAGGAAATTGTGGA-TCTA 412
Query 460 TGCCTTGAAAG-GCTGAGGAAA-TTGGCAGACAATTGCACAGGGTTACAAGGATTTTTGG 517
|||||||| | | |||||||| || || ||||| || || || |||||||| |||||||
Sbjct 413 TGCCTTGACCGTG-TGAGGAAACTT-GCCGACAACTGTACTGGCTTACAAGGGTTTTTGG 470
Query 518 TATTCAATGCTGTTGGGGGTGGAACAGGTTCTGGTTTGGGTTCTTTACTGTTGGAGCGCT 577
| |||||||||||||| |||||||| |||||||| ||||||||| | |||| || || |
Sbjct 471 TGTTCAATGCTGTTGGTGGTGGAACTGGTTCTGGATTGGGTTCTCTGTTGTTAGAACGTT 530
Query 578 TGTCCGTAGATTTTGGaaaaaaaTCAAAACTCGGTTTCACCATCTACCCTTCTCCTCAGG 637
|||| ||||||| ||||| || || || || ||||||||||| ||||||||||||||||
Sbjct 531 TGTCTGTAGATTACGGAAAGAAGTCTAAGCTTGGTTTCACCATTTACCCTTCTCCTCAGG 590
Query 638 TTTCTACAGCAGTTGTGGAGCCGTATAACAGTGTTCTCTCGACTCATTCTCTTCTCGAAC 697
||||||| || ||||| ||||| || |||||||||||||| || ||||| ||||| ||||
Sbjct 591 TTTCTACTGCTGTTGTAGAGCCTTACAACAGTGTTCTCTCAACGCATTCCCTTCTTGAAC 650
Query 698 ACACAGATGTTGTTGTTCTTTTGGACAATGAAGCCATATACGATATCTGCAGGAGATCTT 757
|||| ||||| | ||| || ||||| || |||||||| || || || ||| | |||||
Sbjct 651 ACACCGATGTAGCTGTCCTCTTGGATAACGAAGCCATCTATGACATTTGCCGCAGATCCC 710
Query 758 TAGACATTGAGAGGCCTACATACTCCAATTTGAACCGCTTGATCTCCCAAACCATCTCTT 817
|||| || |||||||| || ||| | || |||||| | ||||| || || | ||| || |
Sbjct 711 TAGATATCGAGAGGCCAACCTACACAAACTTGAACAGGTTGATATCACAGATCATTTCAT 770
Query 818 CGCTT-ACAACTTC-TCTAAGATTTGACGGTGCCATCAATGTGGACATCACCGAGTTCCA 875
| ||| ||||| || | | || ||||| || |||||||||||||| ||||| ||||||||
Sbjct 771 C-CTTGACAACATCGT-TGAGGTTTGATGGAGCCATCAATGTGGATATCACTGAGTTCCA 828
Query 876 GACCAACCTTGTACCTTA-CCCTCGGATCCACTTCATGCTCTCCTCTTATGCACCTGTGA 934
|||||| ||||| || || ||| || ||||| ||||||||||| ||||||||||| || |
Sbjct 829 GACCAATCTTGTCCCATATCCC-CGTATCCATTTCATGCTCTCATCTTATGCACCAGTCA 887
Query 935 TTTCATCTGCAAAGGCCTACCATGAGCAGTTTTCGGTCCCTGAGATCACGACTTCCGTCT 994
| ||| | || ||||| |||||||| ||||| || |||||||||||||| | | |||| |
Sbjct 888 TCTCAGCCGCCAAGGCTTACCATGAACAGTTATCAGTCCCTGAGATCACCAATGCCGTGT 947
Query 995 TTGAACCCTCCAATATGATGGCTAAA-TGTGACCCTAGGCATGGCAAGTACATGGCTTGC 1053
|||| || | | |||||||| ||| |||||||| ||||| || ||||||||||| ||
Sbjct 948 TTGAGCCAGCTAGCATGATGGC-AAAGTGTGACCCGAGGCACGGAAAGTACATGGCATGT 1006
Query 1054 TGTTTGATGTATCGTGGTGACGTTGTGCCCAAGGATGTCAATACAGCCGTT-GCTGCCAT 1112
||||||||||| ||||| || || || ||||| ||||| ||| | || ||| || ||||
Sbjct 1007 TGTTTGATGTACCGTGGAGATGTCGTTCCCAAAGATGTTAATGCTGCTGTTGGC-ACCAT 1065
Query 1113 CAAAGCCAAACGA--ACAATTCAGTTTGTTGACTGGTGCCCAACTGGATTCAAGTGCGGG 1170
| ||| |||| || || |||||||||||||||||||||||||||| ||||| || ||
Sbjct 1066 C-AAGACAAA-GAGGACTGTTCAGTTTGTTGACTGGTGCCCAACTGGGTTCAAATGTGGA 1123
Query 1171 ATAAACTACCAGCCGCCTTCCGTTGTTCCAGGTGGTGACCTGGCTAAGGTTCA-ACGAGC 1229
|| |||||||| || || | |||||||||||||||||||| ||||||||||| | ||||
Sbjct 1124 ATCAACTACCAACCTCCAACAGTTGTTCCAGGTGGTGACCTCGCTAAGGTTCAGA-GAGC 1182
Query 1230 GGTTTGCATGATCAGCAATAATACTGCAGTTGCTGAAGTGTTCTCACGTATAGACCATAA 1289
|| ||||||||||| || || || |||||||| || ||||||||||| || ||||| ||
Sbjct 1183 TGTGTGCATGATCAGTAACAACACAGCAGTTGCGGAGGTGTTCTCACGGATCGACCACAA 1242
Query 1290 GTTTGATCTCATGTACTCCAAA-AGAGCCTTTGTCCATTGGTATGTAGGAGAGGGTATGG 1348
||||||||| ||||| | |||| || || ||||| || ||||| || || ||||| ||||
Sbjct 1243 GTTTGATCTTATGTA-TGCAAAGAGGGCATTTGTGCACTGGTACGTTGGTGAGGGAATGG 1301
Query 1349 AAGAAGGAGAGTTCTCTGAGGCTCGTGAGGATCTTG-CTGCCCTCGAGAAAGATTATGAG 1407
| ||||| || ||||||||||| ||||| || |||| | || || ||||||||||| ||
Sbjct 1302 AGGAAGGTGAATTCTCTGAGGCACGTGAAGA-CTTGGCCGCACTGGAGAAAGATTACGAA 1360
Query 1408 GAAGTTGGTGGAGAAGGAGCG-GAGGACGACGACGAAGAAGGCGATGAGTATT 1459
||||| |||| ||||| | | || || || || || ||||| || || ||||
Sbjct 1361 GAAGTGGGTGCTGAAGGTG-GTGACGATGAAGAAGATGAAGGTGAAGACTATT 1412
> Ahg494557 jgi|Araly1|494557|fgenesh2_kg.8__373__AT1G50010.1
Length=1707
Score = 640 bits (346), Expect = 0.0
Identities = 1065/1403 (76%), Gaps = 85/1403 (6%)
Strand=Plus/Plus
Query 104 CGAACATGAGGGAGAT-CA-TTAGCATTCATATCGGACAAGCTGGTATTCAGGTCGGAAA 161
|||| ||||| ||| | || || | || || || || || || ||||| |||||||||||
Sbjct 99 CGAAAATGAGAGAG-TGCATTTCG-ATCCACATTGGTCAGGCCGGTATCCAGGTCGGAAA 156
Query 162 TTCTTGTTGGGAGCTTTATTGTCTCGAACATGGTATCCAACCCGATGG-CACCATGCCCA 220
|||| ||||||||||| ||||| |||||||| || || || ||||| || |||||||
Sbjct 157 CGCTTGCTGGGAGCTTTACTGTCTTGAACATGGCATTCAGCCTGATGGTCA-GATGCCCA 215
Query 221 GTGA-TAGTACTGTTGGTGCATGTCATGATGCATTCAACACATTCTTTAGCGAGACAAGC 279
|||| || |||||||| | | || | ||||| |||||||| ||||| || || || |
Sbjct 216 GTGACAAG-ACTGTTGGCGGAGGTGACGATGCTTTCAACACCTTCTTCAGTGAAAC-CGG 273
Query 280 T-CAGGCCAA-CATGTGCCTCGAGCTGTGTTTCTTGATCTCGAACCAACCGTCATTGACG 337
| |||| || || || || || ||||| ||| ||||||| || ||||| || || || |
Sbjct 274 TGCAGG-GAAGCACGTCCCACGTGCTGTCTTTGTTGATCTTGAGCCAACTGTGATCGATG 332
Query 338 AAGTAAGAACCGGCACTTACAGACAGCTTTTCCATCCC-GAGCAACTTATC-TCTGGCAA 395
| || || || || || ||| | ||||||||||| ||| |||||||| ||| | || ||
Sbjct 333 AGGTTAGGACTGGTACATACCGTCAGCTTTTCCA-CCCTGAGCAACTCATCAGC-GGTAA 390
Query 396 AGAAGATGCAGCCAATAACTTTGCTAGAGGCCATTACACTGTT-GGAAGGGAAATTGTTG 454
|||||||||||| || ||||| || | || |||||||| || |||| || |||||||
Sbjct 391 AGAAGATGCAGCTAACAACTTCGCCCGTGGACATTACACCATTGGGAA-AGAGATTGTTG 449
Query 455 ACACCTG-CCTT-GAAAGGCTGAGGAAA-TTGGCAGACAATTGCACAGGGT-TACAAGGA 510
| ||| ||| || | | | |||| | || || || || || ||| | ||||||
Sbjct 450 --ATCTGTGCTTGGACCGTATCA-GAAAGCTCGCTGATAACTGTAC-TGGTCTCCAAGGA 505
Query 511 TT-TTTGGTATTCAATGCTGTTGGGGGTGGAACAGGTTCTGGT-TTGGGTTCTTTACT-G 567
|| || || ||||| |||||||| || || || || |||||| || || ||| | ||
Sbjct 506 TTCCTT-GTCTTCAACGCTGTTGGTGGAGGCACTGGATCTGGTCTT-GGATCTCTCCTCC 563
Query 568 TTGGAGCG-CTTGTCCGTAGATTTTGGaaaaaaaTCAAAACTCGGTTTCACCATCTACCC 626
|| ||| | ||| || || || | ||| ||||| || || | |||||||| | |||||
Sbjct 564 TT-GAGAGACTT-TCTGTTGACTATGGCAAAAAGTCCAAGTTGGGTTTCACTGTTTACCC 621
Query 627 TTCTCCTCAGGTTTCTACAGCAGTTGTGGAGCCGTATAACAGTGTTCTCTCGACTCATTC 686
||||| ||||| ||||| | ||||| ||||| || |||||||| ||||| ||||| ||
Sbjct 622 ATCTCCACAGGTCTCTACCTCCGTTGTTGAGCCATACAACAGTGTCCTCTCCACTCACTC 681
Query 687 TCTTC-TCGAACACACAGATGTTGT-TGTTCTTTTGGACAATGAAGCCATATACGATATC 744
|| || | |||||||| |||| | | | || | || || ||||| || || || |||
Sbjct 682 TC-TCTTGGAACACACTGATG-TCTCCATCCTCCTCGATAACGAAGCTATCTATGACATC 739
Query 745 TGCAGGA-GAT-CTTTAGACATTGAGAGGCCTACATACTCCAATTTGAACCG-CTTGATC 801
|||| || | | | | || ||||||| | || || ||| |||| | ||||| |||| ||
Sbjct 740 TGCA-GACGCTCCCTAAG-CATTGAGCGACCAACCTACACCAACCTCAACCGTCTTG-TC 796
Query 802 TCCCAAACCATCTCTTCGCTT-ACAACTTCTCTAAGATTTGACGGTGCCATCAATGTGGA 860
|| || ||||| || ||| || ||||||| || ||||| |||||| | || |||||
Sbjct 797 TCTCAGGTGATCTCATC-CTTGACTGCTTCTCTTAGGTTTGATGGTGCCTTGAACGTGGA 855
Query 861 CATCACCGAGTTCCAGACCAACCTT-GTACCTTACCCTCGGATCCACTTCATGCTCTCCT 919
|||| |||||||| ||||| ||| || || ||||| | |||||||||||||| || |
Sbjct 856 TGTCACTGAGTTCCAAACCAA-CTTGGTCCCATACCCAAGAATCCACTTCATGCTTTCGT 914
Query 920 CTTATGCACCTGTGATTTCATCTGC--A-AAGGCCTACCATGAGCAGTTTTCGGTCCCTG 976
| || ||||| || | || ||||| | ||||||| ||||||||| | || || |||
Sbjct 915 CCTACGCACCAGTCA--TC-TCTGCAGAGAAGGCCTTCCATGAGCAACTCTCAGTTGCTG 971
Query 977 AGATCACGACTTCCGT-C-TTTGAACC--C-TCCAATATGATGGCTAAATGTGACCCTA- 1030
||||||| | | || | ||||| || | ||| ||||||||||| |||||||| |
Sbjct 972 AGATCAC-A-AACAGTGCTTTTGAGCCAGCTTCC---ATGATGGCTAAGTGTGACCC-AC 1025
Query 1031 GGCATGGCAAGTACATGGCTTGCTGTTTGATGTATCGTGGTGACGTTGTGCCCAAGGATG 1090
| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 1026 GTCATGGCAAGTACATGGCTTGCTGTTTGATGTACCGTGGTGATGTTGTCCCCAAGGATG 1085
Query 1091 TCAATACAGCCGTTGCTGC-CA-TCAA-AGCCAAACGAACAATTCAGTTTGTTGACTGGT 1147
| || |||| |||| || || |||| | |||| || || |||||||||||||||||||
Sbjct 1086 TGAACGCAGCTGTTG--GCACAATCAAGA-CCAAGCGCACTATTCAGTTTGTTGACTGGT 1142
Query 1148 G-CCCAACTGGATTCAAGTGCGGGATAAACTACCAGCCGCCTTCCGTTGTTCCAGGTGGT 1206
| |||| |||| |||||||| || || ||||| ||||| || | ||||||||||| |||
Sbjct 1143 GTCCCA-CTGGGTTCAAGTGTGGTATCAACTATCAGCCACCAACTGTTGTTCCAGGAGGT 1201
Query 1207 GACCTGGCTAAGGTTCA-ACGAGCGGTTTGCATGATCAGCAATAATACTGCAGT-T-GCT 1263
|| || ||||| || || | |||| ||||| |||||| ||| | | | |||| | |||
Sbjct 1202 GATCTTGCTAAAGTCCAGA-GAGCTGTTTGTATGATCT-CAA-ATTCCACCAGTGTTGCT 1258
Query 1264 GAAGTGTTCTCACGTATAGACCATAAGTTTGATCTCATGTACTCCAAAAGAGCCTTT-GT 1322
|| |||||||| ||||| || || ||||||||||| |||||| ||||| | || ||| ||
Sbjct 1259 GAGGTGTTCTCCCGTATTGATCACAAGTTTGATCTTATGTACGCCAAACGTGC-TTTCGT 1317
Query 1323 CCATTGGTATGTAGGAGAGGGTATGGAAGAAGGAGAGTTCTCTGAGGCTCGTGAGGATCT 1382
|| |||||||| || |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1318 TCACTGGTATGTGGGTGAGGGTATGGAAGAAGGAGAATTCTCAGAGGCTCGTGAGGATCT 1377
Query 1383 TGCTGCCCTCGAGAAAGATTATGAGGAAGTTGGTGGAGAAGGAGCG-GAGGACGACGACG 1441
||| || | ||||| |||||||| || ||||||| ||||| | | || || || || |
Sbjct 1378 TGCAGCATTGGAGAAGGATTATGAAGAGGTTGGTGCTGAAGGTG-GTGACGATGAGGATG 1436
Query 1442 AAGAAGGCGATGAGTATTA-GAA 1463
| ||||| || ||||| || |||
Sbjct 1437 ATGAAGGAGAGGAGTACTAAGAA 1459
> Ahg948572 jgi|Araly1|948572|scaffold_800459.1
Length=348
Score = 302 bits (163), Expect = 7e-81
Identities = 235/266 (88%), Gaps = 19/266 (7%)
Strand=Plus/Plus
Query 1204 GGTGACCTGGCTAAGGTTCAACGAGCGGTTTGCATGATCAGCAATAATACTGCAGTTGCT 1263
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 95 GGTGACCTGGCAAAGGTTCAACGAGCGGTTTGCATGATCAGCAACAATACTGCAGTGGCT 154
Query 1264 GAAGTGTTCTCACGTATAGACCATAAGTTTGATCTCATGTACTCCAAAAGAGCCTTTGTC 1323
|||||||||| |||||||||||||||||||||| | |||||||||| |||||||||||||
Sbjct 155 GAAGTGTTCTTACGTATAGACCATAAGTTTGATTTGATGTACTCCACAAGAGCCTTTGTC 214
Query 1324 CATTGGTATGTAGGAGAGGGTATGGAAGAAGGAGAGTTCTCTGAGGC-TCGTGAGGATCT 1382
|||||||||||||||||||| |||||||||||||||||||||| | | | |||||||| |
Sbjct 215 CATTGGTATGTAGGAGAGGGCATGGAAGAAGGAGAGTTCTCTG-GCCCT-GTGAGGAT-T 271
Query 1383 TGCTGCCCTCGAGAAAGATTATGAGGAAGTTGGTGGAGAAGGAGCGGAGGACGACGACGA 1442
|||||||| || || | | |||||| ||||||||| |||||||| |||||
Sbjct 272 --CTGCCCTC-AG---GA--A-G------TTGGTGCAGAAGGAGCAGAGGACGAAGACGA 316
Query 1443 AGAAGGCGATGAGTATTAGAAAGACA 1468
||||||||||||||||||||||||||
Sbjct 317 AGAAGGCGATGAGTATTAGAAAGACA 342
> Ahg356572 jgi|Araly1|356572|fgenesh1_pg.C_scaffold_8000359
Length=618
Score = 185 bits (100), Expect = 7e-46
Identities = 111/116 (96%), Gaps = 1/116 (1%)
Strand=Plus/Plus
Query 897 TCGGATCCACTTCATGCTCTCCTCTTATGCACCTGTGATTTCATCTGCAAAGGCCTACCA 956
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 504 TCGGATCCACTTCATGCTCTCCTCTTATGCACCTGTGATTTCATCTGCAAGGGCCTACCA 563
Query 957 TGAGCAGTTTTCGGTCCCTGAGATCACGACTTCCGTCTTTGAACCCTCCAATATGA 1012
| ||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 564 TAAGCAGTTCTCGGTTCCTGAGATCACGACTTCCGTCTTTGAACC-TCCAATATGA 618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61934738370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5