BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64760.1
Length=1610
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925289 jgi|Araly1|925289|scaffold_200850.1 2198 0.0
Ahg931454 jgi|Araly1|931454|scaffold_303911.1 333 2e-90
> Ahg925289 jgi|Araly1|925289|scaffold_200850.1
Length=1478
Score = 2198 bits (1190), Expect = 0.0
Identities = 1365/1450 (94%), Gaps = 10/1450 (1%)
Strand=Plus/Plus
Query 106 AGGTGAAAATCGATGTCGAATCTGTTGGCTC-TCGTCGTCGGATTCGTAATCGTAATTGG 164
||||||| ||||||||| |||||||| || | |||||||||||||||||||| |||||||
Sbjct 9 AGGTGAAGATCGATGTCAAATCTGTTAGC-CATCGTCGTCGGATTCGTAATCTTAATTGG 67
Query 165 TCATTTGGGTATTTTGGTAAATGGGTTGGGTGTGAATTGGGGAACAATGGCTACACATAA 224
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 TTATTTGGGTATTTTGGTAAATGGGTTGGGTGTGAATTGGGGAACAATGGCTACACATAA 127
Query 225 GCTACCTCCAAAGACAGTGGTTCAGATGCTTAAAGACAATAACATCAACAAAGTTAAGCT 284
||| ||||||||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 128 GCTGCCTCCAAAGACAGTGGTTCAGATGCTTAAGGACAATAACATCAACAAGGTGAAGCT 187
Query 285 TTTTGATGCGGACGAGACAACCATGGGTGCACTCGCTGGATCGGGTCTTGAAGTGATGGT 344
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 188 TTTTGACGCAGACGAGACAACCATGGGTGCACTCGCTGGCTCGGGTCTTGAAGTGATGGT 247
Query 345 CGCTATTCCCAATGATCAGCTTAAGGTTATGACTAGTTACGACCGAGCCAAAGATTGGGT 404
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 248 CGCTATTCCAAATGATCAGCTTAAGGTTATGACCAGTTACGACCGAGCCAAAGATTGGGT 307
Query 405 TCGTAAGAATGTCACTCGTTATAACTTCGATGGTGGTGTCAATATCACGTTTGTAGCTGT 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 TCGTAAGAATGTCACTCGTTATAACTTCGATGGTGGTGTCAATATCACGTTTGTAGCTGT 367
Query 465 TGGGAATGAGCCATTCCTCAAATCATACAATGGATCGTTCATAAACCTCACATTCCCTGC 524
||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 368 TGGAAATGAGCCATTCCTCAAATCATACAATGGATCGTTCATTAACCTCACATTTCCTGC 427
Query 525 ACTTGCGAACATTCAAAACGCTTTAAATGAAGCCGGACTAGGAAACTCTGTCAAAGCAAC 584
|||| ||||||||||||||||| |||||||||| |||||||||||||| |||||||||||
Sbjct 428 ACTTACGAACATTCAAAACGCTCTAAATGAAGCTGGACTAGGAAACTCAGTCAAAGCAAC 487
Query 585 AGTCCCTTTAAACGCGGATGTATACGATTCACCAGCAAGCAATCCC-GTTCCATCTGCAG 643
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 488 CGTCCCTTTAAACGCGGATGTATACGATTCACCAGCAAGCAA-CCCTGTTCCATCTGCAG 546
Query 644 GAAGATTCCGTCCCGATATCATCGGTCAAATGACTCAGATTGTTGACTTTCTTGGCAAGA 703
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 547 GAAGATTCCGTCCCGATATCATTGGTCAAATGACTCAAATTGTTGACTTTCTTGGCAAGA 606
Query 704 ACAATGCTCCCATCACAATTAACATCTACCCTTTCTTAAGTCTCTATGGGAATGATGATT 763
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 607 ACAATGCTCCCATCACAATTAATATCTACCCTTTCTTAAGTCTCTATGGGAATGATGATT 666
Query 764 TCCCACTCAACTACGCCTTCTTCGATGGTGCTGAACCGATAAACGACAACGGTATTGATT 823
|||||||||| || |||||||||||||| ||| |||||||||| ||||||||||||||||
Sbjct 667 TCCCACTCAATTATGCCTTCTTCGATGGGGCTCAACCGATAAATGACAACGGTATTGATT 726
Query 824 ATACAAACGTTTTCGATGCCAATTTCGATACTTTGGTGTCGTCTTTGAAAGCTGTTGGTC 883
| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 727 ACACAAATGTTTTTGATGCCAATTTCGACACTTTGGTGTCGTCTTTGAAAGCTGTTGGTC 786
Query 884 ACGGAGATATGCCAATAATCGTTGGAGAAGTTGGTTGGCCAACAGAGGGTGACAAACACG 943
| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 787 ATGGCGATATGCCAATAATCGTTGGAGAAGTCGGTTGGCCAACAGAGGGTGACAAACACG 846
Query 944 CTAATGCAGGCAGTGCTTACAGATTCTACAACGGGCTTTTACCGAGGCTTGGAACAAACA 1003
| ||| | |||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 847 CGAATTCCGGCAATGCTTACAGATTCTACAACGGGCTTTTACCAAGGCTTGGAACAAACA 906
Query 1004 AAGGAACTCCATTGAGACCAACCTACATTGAGGTATACTTGTTCGGATTACTCGACGAGG 1063
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 907 AAGGCACTCCATTGAGACCGACCTACATTGAGGTATACTTGTTCGGATTACTCGATGAGG 966
Query 1064 ATGCAAAAAGTATAGCACCGGGACCGTTCGAACGCCATTGGGGAATATTTAAATTCGACG 1123
|||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 967 ATGCGAAAAGTATAGCACCGGGACCGTTTGAACGGCATTGGGGAATATTTAAATTCGACG 1026
Query 1124 GGCAACCAAAGTTTCCTATAGATCTTTCAGGTCAAGGACAGAGTAAGTTCTTGATTGGTG 1183
||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||
Sbjct 1027 GGCAACCAAAGTTTCCTATAGATCTGTCAGGTCAAGGACAGAACAAGTTGTTGATTGGTG 1086
Query 1184 CACAAAACGTGCCGTATCTACCCAACAAGTGGTGTACGTTTAATCCAGAAGCCAAGGACT 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1087 CACAAAACGTGCCGTATCTACCCAACAAGTGGTGTACGTTTAATCCAGAAGCCAAAGATT 1146
Query 1244 TGACAAAACTCGCGGCTAATATAGATTACGCCTGCACTTTCTCTGATTGCACGGCGCTTG 1303
|||||||||| |||||||| ||||||| ||||||||||||||| |||||||| |||||||
Sbjct 1147 TGACAAAACTGGCGGCTAACATAGATTTCGCCTGCACTTTCTCGGATTGCACAGCGCTTG 1206
Query 1304 GATACGGATCTTCTTGCAATACTCTTGATGCAAATGGAAACGCGTCGTATGCGTTTAACA 1363
| || |||||||| |||||||| |||||||| ||||| || |||||||||||||||||||
Sbjct 1207 GTTATGGATCTTCGTGCAATACACTTGATGCCAATGGGAATGCGTCGTATGCGTTTAACA 1266
Query 1364 TGT-TCTTTCAAGTGAAGAATCAAGATGAGAGTGCTTGCTATT-TTC-AAGGTTTGGCCA 1420
||| | ||||||||||||||||||||||| |||||||| | || ||| ||||||||||||
Sbjct 1267 TGTAT-TTTCAAGTGAAGAATCAAGATGAAAGTGCTTG-T-TTCTTCCAAGGTTTGGCCA 1323
Query 1421 CCATTACAACGCAGAATATATCTCAAGGACAATGCAATTTCCCTATTCAGATTGTGGCTT 1480
|||| || || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 CCATCACCACACAGAATATATCTCAAGGACAATGCAATTTCCCTATTCAGATTGTGGCTT 1383
Query 1481 CCTCAGCCTCTTCTTTTTCTTGTTCGTCTTATTCTTTGGTTGTGTTGATCGTTTGGTTTC 1540
||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1384 CCTCAGCCTCTTCCTTTTCTTGTTCGTCTTATTCTTTGGTTTTGTTGATCCTTTGGTTTC 1443
Query 1541 TGTTATCAGG 1550
| || |||||
Sbjct 1444 TCTTGTCAGG 1453
Score = 52.8 bits (28), Expect = 8e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1563 AGGTTAGATTGAATTTGTTGAACTTAGT 1590
||||||||||||||||||||||||||||
Sbjct 1451 AGGTTAGATTGAATTTGTTGAACTTAGT 1478
> Ahg931454 jgi|Araly1|931454|scaffold_303911.1
Length=376
Score = 333 bits (180), Expect = 2e-90
Identities = 276/321 (86%), Gaps = 11/321 (3%)
Strand=Plus/Plus
Query 123 GAATCTGTTGGCTC-TCGTCGTCGGATTCGTAATCGTAATTGGTCATTTGGGTATTTTGG 181
|||||||||||| | ||||||| ||||| | |||| || ||| | || | || |||
Sbjct 26 GAATCTGTTGGC-CATCGTCGTTGGATTTGGAATC---ATGGGT-A-TT--G--TTGTGG 75
Query 182 TAAATGGGTTGGGTGTGAATTGGGGAACAATGGCTACACATAAGCTACCTCCAAAGACAG 241
| ||||| | |||||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 76 TTGATGGGCTAGGTGTGTACTGGGGAACAATGGCTACACATAAGCTACCACCAAAGACAG 135
Query 242 TGGTTCAGATGCTTAAAGACAATAACATCAACAAAGTTAAGCTTTTTGATGCGGACGAGA 301
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 136 TGGTTCAAATGCTTAAGGACAATAACATCAACAAAGTTAAGCTTTTTGATGCGGATGAGA 195
Query 302 CAACCATGGGTGCACTCGCTGGATCGGGTCTTGAAGTGATGGTCGCTATTCCCAATGATC 361
| || ||| ||||||| ||||| || ||||||||||| ||||| |||||||| |||||||
Sbjct 196 CCACAATGAGTGCACTTGCTGGCTCTGGTCTTGAAGTTATGGTTGCTATTCCTAATGATC 255
Query 362 AGCTTAAGGTTATGACTAGTTACGACCGAGCCAAAGATTGGGTTCGTAAGAATGTCACTC 421
|||||||||| ||| ||||| |||||||| || ||||||| || ||||||||||||||
Sbjct 256 AGCTTAAGGTCATGGGAAGTTATGACCGAGCTAAGGATTGGGCTCTTAAGAATGTCACTC 315
Query 422 GTTATAACTTCGATGGTGGTG 442
||||||||||| |||||||||
Sbjct 316 GTTATAACTTCAATGGTGGTG 336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60334948080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5