BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64770.3
Length=1746
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475479 jgi|Araly1|475479|fgenesh2_kg.2__609__AT1G64770.1 1454 0.0
> Ahg475479 jgi|Araly1|475479|fgenesh2_kg.2__609__AT1G64770.1
Length=1197
Score = 1454 bits (787), Expect = 0.0
Identities = 862/896 (96%), Gaps = 13/896 (1%)
Strand=Plus/Plus
Query 450 catttgtcttatc-ttttcctctccttactctccATCAATGGCTTCTCTTATCTCTTTTT 508
||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 39 CATTTGTCTTATCTTTTTCTTCTCCATACTCTCCATCAATGGCTTCTCTTATCTCTTTCT 98
Query 509 CTTTGCTCCCAAAACCAAAAGCCGTAAGAAGTTCAATTTCAGCTCCTCAGACACAGACAA 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 99 CTTTGCTCCCAAAACCAAAAGCCGTAAGAAGTTCAATTTCAGCTCCTCAGACACAGACAA 158
Query 569 TAAATACTGAAAAGCTTGAAGATAAATTCGGACGAAAAGGCATAAAATTCTCGGAATCAA 628
| ||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 T-AAT--TGAGAGGCTTGAAGATAAATTCGGACGAAAAGGCATAAAATTCTCGGAATCAA 215
Query 629 ACAACATTCCTATGGTAGAGCTTAAGGTCAGAAATGGAAGTTCATTAAAACTGAGTCTAT 688
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 216 ACAACATTCCTATGGTAGAGCTTAAGGTGAGAAATGGAAGTTCATTAAAACTGAGTCTAT 275
Query 689 CAGATGCTCATGTACTTTCATATAAGCCAAAGGTATACTGGAAAGACGAGGGATTCGAGG 748
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 276 CAGATGCTCATGTGGTTTCATATAAGCCAAAGGTATATTGGAAAGACGAGGGATTCGAGG 335
Query 749 AAGTCCTTTACACAGTTGATGGTGATGAGAGCAGAGGTGGGGTTGGTGTTGTTATCGTAA 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 AAGTCCTTTACACAGTTGATGGTGATGAGAGCAGAGGTGGGGTTGGTGTTGTTATCGTAA 395
Query 809 ACGGGGAAGAACC---T------AAAGGAGGGTCTTCAGTAATCTCAGGATGTGATTGGA 859
||||||||||||| | ||||||| |||||||||||||||||||| ||||||||
Sbjct 396 ACGGGGAAGAACCTAATGGACCAAAAGGAGTGTCTTCAGTAATCTCAGGATATGATTGGA 455
Query 860 GTGTCAAGGATACTGATTCAGACGCCATTGATGCTCTTCAGATCGAACTTAGCTGTACGG 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 GTGTCAAGGATACTGATTCAGACGCCATTGATGCTCTTCAGATCGAACTTAGCTGTACGG 515
Query 920 CCGGGGTTCTCGACATAACGTATATCGTCTCTCTCTACCCAGTAAGCATGGCTACAGCTC 979
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 516 CCGGGGTTCTCGACATAACGTATATCGTCTCTCTCTATCCAGTAAGCATGGCTACAGCTC 575
Query 980 TGGTGGTGAAGAACAATGGTCGCAAACCAGTTACCCTTAAACCGGGGATTATGAGTTACT 1039
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 TGGTGGTTAAGAACAATGGTCGCAAACCAGTTACCCTTAAACCGGGGATTATGAGTTACT 635
Query 1040 TGAGGTTCAAGAAACGGAGTGGGGCAGGAATTCAAGGACTAAAGGGATGCTCTTATTGTC 1099
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 636 TGAGGTTCAAGAAACGGAGTGGGGCAGGAATTCAAGGACTAAAGGGATGCTCTTATTGCC 695
Query 1100 CCAACCCGCCTTTGTCATCGCCTTTTGAGCTCTTGTCTCCTTCTGAGGCAATGAAGGCGG 1159
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 696 CCAACCCGCCTTTGTCATCGCCTTTTGAGCTCTTGTCTCCTTCCGAGGCAATGAAGGCGG 755
Query 1160 AATCTTCGGGGTGGTTCGGGTCGGAAGAAGGGGAAAAGCCGGGGATTTGGGCAGTAGAAG 1219
| ||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||
Sbjct 756 ACTCTTCCGGGTGGTTTGGGTCGGACGAAGGGGAAAAGCCGGGGATTTGGGCGGTAGAAG 815
Query 1220 ATTCTGTTATTACACTTCTTGAGAAAAAGATGAGTAGAATATATGGTGCTCCTCCGGCTG 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 ATTCTGTTATTACACTTCTTGAGAAAAAGATGAGTAGAATATATGGTGCTCCTCCGGCTG 875
Query 1280 AGAGATTAAAGGCAGTCTATAACACTCCACCTTCCAAATTTGAAACTATAGATCAG 1335
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 876 AGAGATTAAAGGCAGTCTATAACACTCCACCTTCAAAATTTGAAACTATAGATCAG 931
Score = 453 bits (245), Expect = 2e-126
Identities = 263/271 (97%), Gaps = 4/271 (1%)
Strand=Plus/Plus
Query 1402 AGGG-AGAGGATTGTTTTTCAGGATGATAAGGATTGGGTTCGAAGAGATGTATGTGGGAT 1460
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 930 AGGGAAGAGGATTGTTTTTCAGGATGATAAGGATAGGGTTCGAAGAGATGTATGTGGGAT 989
Query 1461 CCCCAGGATCGATGTGGGACAAGTATGGGAAGCAACATTACTTCGTGTGCACAGGTCCAA 1520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 CCCCAGGATCGATGTGGGACAAGTATGGGAAGCAACATTACTTCGTGTGCACAGGTCCAA 1049
Query 1521 CGTCAATGCTCGTTCCTGTCGATGTAGCCTCCGGAGAGACATGGAGAGGAGCAATGGTAA 1580
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1050 CGTCAATGCTCGTTCCTGTCGATGTGGCCTCCGGAGAGACATGGAGAGGAGCAATGGTAA 1109
Query 1581 TCGAGCATGATAATTTGTAAatttcatttactatagttctgtcttcttcattttttccct 1640
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
Sbjct 1110 TCGAGCATGATAATTTGTAAATTTCATTAACTATAGTTCTGTATTCTTCATTTTTT---T 1166
Query 1641 ctctatttttgttgccattttttcttctata 1671
|||||||||||||||||||||||||||||||
Sbjct 1167 CTCTATTTTTGTTGCCATTTTTTCTTCTATA 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65515221400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5