BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64780.1
Length=1861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925310 jgi|Araly1|925310|scaffold_200871.1 2449 0.0
> Ahg925310 jgi|Araly1|925310|scaffold_200871.1
Length=1589
Score = 2449 bits (1326), Expect = 0.0
Identities = 1490/1571 (95%), Gaps = 3/1571 (0%)
Strand=Plus/Plus
Query 43 ctctccctccctc-cctctccACCATGGACACCGCAACCACCACATGCTCTGCCGTAGAT 101
||||| ||||| | |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 CTCTCTCTCCCCCTCCTCTCCACCATGGACACCGCAACCACCACATGCTCCGCCGTAGAT 60
Query 102 CTATCTGCCCTCCTATCCTCTTCTTCTAACTCAACATCTTCCCTCGCCGCGGCAACCTTT 161
||| ||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 61 CTAGCTGCCCTCCTATCCTCTTCTTCTAACTCAACTTCTTCCCTGGCTGCGGCAACCTTT 120
Query 162 TTATGTTCCCAAATTTCAAACATCTCCAACAAACTCTCCGACACAACTTATGCCGTCGAC 221
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 TTATGCTCCCAAATTTCAAACATCTCCAACAAACTCTCCGACACAACTTTTGCCGTCGAC 180
Query 222 AACACGTATCTCCTCTTCTCCGCCTACCTTGTCTTTGCCATGCAGCTCGGTTTCGCTATG 281
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 181 AACACGTATCTCCTCTTCTCCGCCTACCTCGTCTTTGCTATGCAGCTCGGTTTCGCCATG 240
Query 282 CTTTGTGCTGGATCAGTCCGAGCCAAGAACACTATGAACATCATGCTTACCAATGTCCTT 341
|||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 CTTTGTGCCGGCTCAGTCCGAGCCAAGAACACTATGAACATCATGCTTACTAATGTCCTT 300
Query 342 GATGCTGCCGCTGGAGCCATCTCTTACTACCTCTTCGGATTCGCATTCGCCTTTGGTACA 401
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 GACGCTGCTGCTGGAGCCATCTCTTACTACCTCTTTGGATTCGCATTCGCCTTTGGTACA 360
Query 402 CCTTCCAACGGATTCATCGGTCGCCACCATAGCTTCTTCGCTTTAAGCTCTTACCCTGAA 461
||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCTTCCAACGGCTTCATTGGCCGCCACCATAGCTTCTTCGCTTTAAGCTCTTACCCTGAA 420
Query 462 CGCCCCGGCTCCGACTTCAGCTTTTTCCTCTACCAATGGGCTTTTGCCATAGCCGCGGCC 521
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CGCTCCGGCTCCGACTTCAGCTTTTTCCTCTACCAATGGGCTTTTGCCATAGCCGCGGCA 480
Query 522 GGAATCACTAGCGGTTCCATCGCCGAGCGAACGCAATTCGTTGCTTACCTTATCTACTCT 581
|||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 GGAATCACCAGCGGCTCCATCGCCGAGCGAACCCAATTCGTTGCTTACCTTATCTACTCT 540
Query 582 ACTTTCTTGACCGGTTTTGTTTACCCGACAGTCTCGCACTGGTTCTGGTCAAGTGATGGA 641
||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 541 ACTTTCTTGACTGGTTTTGTTTACCCGACCGTCTCGCACTGGTTCTGGTCGAGTGATGGT 600
Query 642 TGGGCTAGCGCGTCCCGGTCTGACAACAATCTCTTGTTTGGCTCAGGTGCTATTGATTTC 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGGGCTAGCGCGTCCCGGTCTGACAACAATCTCTTGTTTGGCTCAGGTGCTATTGATTTC 660
Query 702 GCAGGTTCAGGAGTTGTTCACATGGTAGGTGGAATTGCCGGTTTATGTGGAGCGTTAGTT 761
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 661 GCAGGTTCAGGAGTTGTTCACATGGTAGGTGGAATTGCCGGTTTATGGGGAGCGTTAGTA 720
Query 762 GAAGGACCAAGAATAGGTAGATTTGACCGGTCAGGCCGGTCCGTGGCTTTACGTGGTCAC 821
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAAGGACCACGAATAGGTAGATTTGACCGGTCAGGCCGGTCCGTGGCTTTACGTGGTCAC 780
Query 822 AGTGCATCCCTTGTCGTGCTTGGTACCTTCTTGTTGTGGTTTGGATGGTATGGGTTTAAC 881
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 AGTGCTTCCCTTGTCGTCCTTGGTACCTTCTTGTTGTGGTTTGGATGGTACGGGTTTAAC 840
Query 882 CCTGGTTCCTTTTTAACCATTCTTAAAGGCTACGACAAGTCTCGGCCATATTATGGTCAA 941
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 841 CCTGGTTCCTTTTTAACTATTCTAAAAGGCTACGACAAGTCTCGGCCATATTATGGTCAA 900
Query 942 TGGAGCGCTGTAGGTCGCACCGCGGTCACCACAACGCTTTCTGGCTGCACCGCTGCGTTG 1001
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 901 TGGAGCGCTGTAGGTCGCACGGCCGTCACAACAACGCTTTCTGGCTGCACCGCTGCGTTG 960
Query 1002 ACTACTCTATTCAGTAAACGGCTTTTAGCAGGTCATTGGAACGTTATTGACGTATGCAAC 1061
|| |||||||| |||||||| || |||||||| || |||||||| |||||||| ||||||
Sbjct 961 ACCACTCTATTTAGTAAACGACTCTTAGCAGGCCACTGGAACGTCATTGACGTGTGCAAC 1020
Query 1062 GGACTT-CTAGGCGGCTTTGCAGCTATAACCTCCGGATGTGCCGTGGTGGAGCCGTGGGC 1120
||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GGA-TTACTAGGCGGCTTCGCAGCTATAACCTCCGGATGTGCCGTGGTGGAGCCGTGGGC 1079
Query 1121 TGCTATAGTATGTGGCTTTGTGGCATCATGGGTTTTAATCGGATTTAACTTGCTTGCCAA 1180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TGCTATAGTATGTGGCTTCGTGGCATCATGGGTTTTAATCGGATTTAACTTGCTTGCCAA 1139
Query 1181 GAAACTTAAATATGATGACCCACTCGAGGCTGCTCAGCTCCACGGTGGATGTGGAGCATG 1240
|||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1140 GAAACTTAAATACGACGACCCACTTGAGGCTGCTCAGCTCCACGGTGGATGTGGAGCATG 1199
Query 1241 GGGATTAATCTTTACCGGGCTGTTCGCAAGGAAAGAATACGTTAACGAGATTTACTCCGG 1300
||| || ||||||||||||||||| ||||| ||| ||||||| |||||| ||||||||||
Sbjct 1200 GGGGTTGATCTTTACCGGGCTGTTTGCAAGCAAACAATACGTCAACGAGGTTTACTCCGG 1259
Query 1301 TGATAGGCCTTACGGACTGTTCATGGGCGGGGGAGGAAAACTGCTCGCCGCGCAGATCGT 1360
||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 1260 CGATAGGCCTTATGGACTGTTGATGGGCGGGGGAGGAAAACTGCTAGCCGCGCAAATCGT 1319
Query 1361 TCAGATTATTGTGATCGTTGGGTGGGTGACGGTAACTATGGGACCGTTGTTTTATGGGTT 1420
|||||| |||||||||||||||||||| ||||| || |||||||| ||||||||||||||
Sbjct 1320 TCAGATCATTGTGATCGTTGGGTGGGTAACGGTGACGATGGGACCTTTGTTTTATGGGTT 1379
Query 1421 ACATAAGATGAATCTTTTGAGGATATCAGCAGAAGATGAGATGGCAGGAATGGACATGAC 1480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1380 ACATAAGATGAATCTTTTGAGGATATCAGCAGAAGATGAGATGGCTGGAATGGACATGAC 1439
Query 1481 ACGTCATGGAGGATTTGCTTACGCATACAATGACGAAGACGACGTGTCGACTAAACCATG 1540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1440 CCGTCATGGAGGATTTGCTTACGCATACAATGACGAAGACGACGTGTCGACTAAACCTTG 1499
Query 1541 GGGTCATTTCGCTGGAAGAGTGGAGCCTACAAGCCGGAGCTCGACTCCTACACCGACCTT 1600
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1500 GGGTCATATGGCTGGAAGAGTGGAGCCTACAAGCCGGAGCTCGACTCCTACACCGACCCT 1559
Query 1601 GACTGTTTGAT 1611
||||||||||
Sbjct 1560 CACTGTTTGAT 1570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69895599575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5