BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G64800.1 Length=348 Score E Sequences producing significant alignments: (Bits) Value Ahg475481 jgi|Araly1|475481|fgenesh2_kg.2__611__AT1G64800.1 560 2e-159 > Ahg475481 jgi|Araly1|475481|fgenesh2_kg.2__611__AT1G64800.1 Length=348 Score = 560 bits (303), Expect = 2e-159 Identities = 333/348 (96%), Gaps = 0/348 (0%) Strand=Plus/Plus Query 1 ATGGAGGGTTCGTCTACAAGCCACAAACGCAAGAAAAATGACGAGCATACTAAGAAGAGC 60 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 1 ATGGAGGGTTCGTCTACAAGCCATAAACGCAAGAAAAATGACGATCATACTAAGAAGAGC 60 Query 61 AAGAAAAGACAACATGTGAGAGCCAACAATGTAGAAAACAAGATGGAAGAGAAGAGAAGT 120 ||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 61 AAGAAGAGACAACATGTGAGAGCCAGCAATGTAGAAAACAAGATGGAGGAGAAGAGAAGT 120 Query 121 GGGAGTAATGAAGAGAGTTTGGGAGTTTTTGAGTTCCCGTGGATGAAGGAGAGTATGATC 180 ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 121 GGGAGTAATGAGGAGAGTTTCGGAGTGTTTGAGTTCCCGTGGATGAAGGAGAGTATGATC 180 Query 181 TCAACCTCACTTGATTGGAGTCTACCGGAATCTATGTTTCCGGTCTTAGATGATGGTAAT 240 || ||||| || ||||||||||||||||||||| | |||||||| ||||||||||||||| Sbjct 181 TCGACCTCCCTCGATTGGAGTCTACCGGAATCTCTTTTTCCGGTTTTAGATGATGGTAAT 240 Query 241 GAGATGTTTGAAGAGATTAGTGATGTGAGATGGCCAGTGAAAAGGGTTAGTAATTATAGG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GAGATGTTTGAAGAGATTAGTGATGTGAGATGGCCAGTGAAAAGGGTTAGTAATTATAGG 300 Query 301 TTGGAGTTTGAGGCTTTTGAATGCATTTGGACTTCTATTTTGGATTAG 348 |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 301 TTGGAGTTTGAGGCCTTTGAATGCATTTGGACTTCTATTTTGGATTAG 348 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12362410836 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5