BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G64800.1

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg475481 jgi|Araly1|475481|fgenesh2_kg.2__611__AT1G64800.1          560    2e-159


> Ahg475481 jgi|Araly1|475481|fgenesh2_kg.2__611__AT1G64800.1
Length=348

 Score =  560 bits (303),  Expect = 2e-159
 Identities = 333/348 (96%), Gaps = 0/348 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGGGTTCGTCTACAAGCCACAAACGCAAGAAAAATGACGAGCATACTAAGAAGAGC  60
            ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct  1    ATGGAGGGTTCGTCTACAAGCCATAAACGCAAGAAAAATGACGATCATACTAAGAAGAGC  60

Query  61   AAGAAAAGACAACATGTGAGAGCCAACAATGTAGAAAACAAGATGGAAGAGAAGAGAAGT  120
            ||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct  61   AAGAAGAGACAACATGTGAGAGCCAGCAATGTAGAAAACAAGATGGAGGAGAAGAGAAGT  120

Query  121  GGGAGTAATGAAGAGAGTTTGGGAGTTTTTGAGTTCCCGTGGATGAAGGAGAGTATGATC  180
            ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct  121  GGGAGTAATGAGGAGAGTTTCGGAGTGTTTGAGTTCCCGTGGATGAAGGAGAGTATGATC  180

Query  181  TCAACCTCACTTGATTGGAGTCTACCGGAATCTATGTTTCCGGTCTTAGATGATGGTAAT  240
            || ||||| || ||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct  181  TCGACCTCCCTCGATTGGAGTCTACCGGAATCTCTTTTTCCGGTTTTAGATGATGGTAAT  240

Query  241  GAGATGTTTGAAGAGATTAGTGATGTGAGATGGCCAGTGAAAAGGGTTAGTAATTATAGG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GAGATGTTTGAAGAGATTAGTGATGTGAGATGGCCAGTGAAAAGGGTTAGTAATTATAGG  300

Query  301  TTGGAGTTTGAGGCTTTTGAATGCATTTGGACTTCTATTTTGGATTAG  348
            |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  301  TTGGAGTTTGAGGCCTTTGAATGCATTTGGACTTCTATTTTGGATTAG  348



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12362410836


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5