BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G64810.2
Length=1716
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475482 jgi|Araly1|475482|fgenesh2_kg.2__612__AT1G64810.1 2314 0.0
> Ahg475482 jgi|Araly1|475482|fgenesh2_kg.2__612__AT1G64810.1
Length=1616
Score = 2314 bits (1253), Expect = 0.0
Identities = 1497/1613 (93%), Gaps = 24/1613 (1%)
Strand=Plus/Plus
Query 48 TCAAATCCTCATC-TATTTTCTTAAATGTTGCAGGAATCTGGGAAAGTAATCGTTTTTGG 106
||| ||||||| | | ||||||||||||||||||||||| |||||||||| | |||||||
Sbjct 16 TCATATCCTCA-CTTGTTTTCTTAAATGTTGCAGGAATCAGGGAAAGTAAGCATTTTTGG 74
Query 107 CTTAATTCTGATTTGGG---TTCTTACTTATATAGTCAACATGCTTCTGGTTTCTCCTGC 163
|||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 75 CTTACTTCTGATTTGGGTTCTTCTTACTTATATAGTCAACATGCTTCTGGTTTCGCCTGC 134
Query 164 TTGTAGAGGTGTTTATCTTCAGACCATAGATCCAAAGCCAATTGATTTCTCAGCTAGAGC 223
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 135 TTGTAGAGGTGTTTATCTTCAGACCATAGATCCAAATCCAATTGATTTTTCAGCCAGAGG 194
Query 224 CTCTTATGCACTTTGCTTTCAGATTCCTAC-TTCAATCCCTAAAAGAGAGTGTTTGATGA 282
|||||||||| |||||||||||||||| | ||||||||||||||| ||||| | |||||
Sbjct 195 CTCTTATGCAAGTTGCTTTCAGATTCCT-CGTTCAATCCCTAAAAGGGAGTGCTCGATGA 253
Query 283 GGTTAGGAACGGTCTTTTGTTTTAATCAGAAGCATAGAGAGCAGACAAGTTTTAAGAAAC 342
||||| |||| | ||||||| |||||||| | || |||||| |||||||| |||||||
Sbjct 254 GGTTAAGAACCATAGTTTGTTTCAATCAGAATCTTACAGAGCACACAAGTTTCAAGAAAC 313
Query 343 GGTATGTATCTACGCAGAATGTGGATCTTCCTCCTATTTTACCAAAGAACAAGAAGAAAC 402
|| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 GGCATGTATCCACCCAGAATGTGGATCTTCCTCCTATTTTACCAAAGAACAAGAAGAAAC 373
Query 403 CTTATCCTATTCCTTTTAAGCAAATCCAAGAAGAGGCTAGGAAAGATAAGAAACTTGCTC 462
|||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 374 CTTATCCTGTTCCTTTTAAGCAAATTCAAGAAGAGGCTAGGAAAGATAAGAAGCTTGCTC 433
Query 463 AGATGGGTATAGAGAAACAGTTGGATCCTCCTAAAAATGGATTGCTAGTTCCCAATCTTG 522
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 434 AGATGGGTATAGAGAAACAGTTGGAACCTCCTAAAAATGGATTGCTAGTTCCCAATCTTG 493
Query 523 TTCCTGTGGCTG-ATCAAGTGATAGATAACTGGAAGTTGTTGATCAAGGGTTTAGCACAG 581
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 TTCCTGTGGC-GTATCAAGTGATAGATAACTGGAAGTTGTTGATCAAGGGTTTAGCACAG 552
Query 582 CTTCTTCATGTTGTTCCCGTCTTTGCTTGTAGTGAATGTGGAGCGGTTCATGTGGCTAAT 641
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 553 CTTCTTCATGTTGTTCCCGTGTTTGCTTGTAGTGAATGTGGAGCGGTTCATGTTGCCAAT 612
Query 642 GTTGGTCATAACATTAGGGATTGTAATGGTCCAACGAATTCACAGCGACGTGGTTCTCAT 701
| |||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 613 GCTGGTCACAACATTAGGGATTGCAATGGTCCAACAAATTCACAGCGACGTGGTTCTCAT 672
Query 702 TCTTGGGTTAAGGGTACCATTAACGATGTTCTTATTCCTGTTGAGTCGTACCACATGTAT 761
|| ||||||||||||||||| || |||||||| |||||||||||||||||||||||| ||
Sbjct 673 TCATGGGTTAAGGGTACCATCAATGATGTTCTCATTCCTGTTGAGTCGTACCACATGCAT 732
Query 762 GACCCTTTCGGGCGGCGGATTAAGCATGAAACACGGTTTGAGTATGAAAGAATCCCAGCA 821
|||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 733 GACCCTTTTGGGCGGCGGATTAAGCACGAAACACGGTTTGACTATGAAAGAATCCCAGCA 792
Query 822 CTTGTTGAGCTATGTATTCAAGCTGGAGTTGAGATCCCTGAGTATCCTTGTCGCAGAAGG 881
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 793 CTTGTTGAGCTATGTATTCAGGCTGGAGTTGAGATCCCTGAGTATCCTTGTCGCAGAAGG 852
Query 882 ACACAGCCAATCAGAATGATGGGGAAGAGAGTGATCGATCGAGGTGGATATCATAAAGAG 941
|||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 853 ACACAGCCAATCCGAATGATGGGGAAGAGAGTGATCGATCGAGGTGGATATCTTAGAGAG 912
Query 942 CCTGAAAAGCCTCAGACATCATCATCATTATCATCTCCA-TTAGCCGAGCTTGATACTCT 1000
||||| ||||||||| | |||||||||||||||||||| || ||||||||||| || ||
Sbjct 913 CCTGATAAGCCTCAG--A-CATCATCATTATCATCTCCACTT-GCCGAGCTTGACACGCT 968
Query 1001 TGGTGTTTTTGAAAGGTATCCACCTCCCACTCCAGAGGATATACCTAAGATAGCACAGGA 1060
||| | || ||||||| |||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 969 TGGAGCTTGTGAAAGGCATCCGCCTCCCACACCAGAGGACATACCTAAGATAGCACAGGA 1028
Query 1061 AACAATGGATGCTTATGAGAAAGTGAGATTGGGGGTGACGAAATTAATGAGGAAATTCAC 1120
|||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1029 AACAATGGATGCTTATGAAAAAGTGAGATTGGGGGTGACCAAATTGATGAGGAAATTCAC 1088
Query 1121 AGTGAAAGCATGCGGATATTGTTCTGAAGTGCATGTAGGACCATGGGGACATAGTGTAAA 1180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1089 GGTGAAAGCATGCGGATATTGTTCTGAAGTGCATGTAGGACCATGGGGACATAGTGTGAA 1148
Query 1181 GCTGTGCGGAGAGTTCAAGCACCAATGGAGAGATGGGAAGCACGGATGGCAAGATGCTCT 1240
||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1149 GCTGTGCGGGGAGTTCAAACACCAATGGAGAGACGGGAAGCACGGATGGCAAGATGCTCT 1208
Query 1241 TGTGGACGAAGTCTTTCCTCCAAACTATGTATGGCATGTGAGAGACCTTAAGGGAAATCC 1300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1209 TGTGGACGAAGTCTTTCCTCCAAATTATGTATGGCATGTGAGAGACCTTAAGGGAAATCC 1268
Query 1301 GCTTACCGGAAACCTCAGAAGGTTTTATGGTAAAGCCCCTGCTTTGGTTGAGATTTGTAT 1360
|||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 GCTTACCGGAAATCTGAGGAGGTTTTATGGTAAAGCCCCTGCTTTGGTTGAGATTTGTAT 1328
Query 1361 GCACAGTGGAGCTCGGGTTCCTCAACGCTATAAGGCCATGATGAGGCTTGACATCATTGT 1420
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1329 GCACAGTGAAGCTCGGGTTCCTCAACGCTACAAGGCCATGATGAGGCTTGACATCATTGT 1388
Query 1421 TCCTGATTCACAGGAAGCCGACATGGTCGCATAAGTCCTTGGAAATGTTCAAAGTAGAAC 1480
|||||||||||||||||| |||||||||||||| ||||||||| ||||||| |||||||
Sbjct 1389 TCCTGATTCACAGGAAGCTGACATGGTCGCATAGGTCCTTGGACATGTTCATAGTAGAAA 1448
Query 1481 TCCTTTGTTAGGATAAAGAAGCTGAAAATAAAATGAGCTGGCTAGCTAGGATCTTTCCTC 1540
||| ||| ||||||||| ||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1449 TCCATTGGTAGGATAAAAAAGTTGATAATAAAATGAGCTGGCTAGCTAGGATCTTTCCTC 1508
Query 1541 GTAGGAGACATTAGAAATCTTGTCATATAGTGTATTTTGCAATTTGGGTGTAAAATATTT 1600
||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1509 ATAGGATACGTTAGAAATCTTGTCATATAGTGTATTTTACAATTTGGGTGTAAAATATTT 1568
Query 1601 TAGAAATC-T-TGTCATA--T-AGAAATATTTTAGATATTTGTTTGATTCTCT 1648
||||| || | ||| ||| | |||| |||| | ||||||||||||||||||
Sbjct 1569 TAGAA-TCCTGTGT-ATAAATTAGAA-TATTA-A-ATATTTGTTTGATTCTCT 1616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64372514050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5